Incidental Mutation 'R1210:Or4c100'
| ID |
100635 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4c100
|
| Ensembl Gene |
ENSMUSG00000082882 |
| Gene Name |
olfactory receptor family 4 subfamily C member 100 |
| Synonyms |
GA_x6K02T2Q125-50012960-50013871, Olfr1186, MOR230-5 |
| MMRRC Submission |
039279-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.058)
|
| Stock # |
R1210 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
88355845-88356934 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to C
at 88356620 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Proline
at position 231
(R231P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151114
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000075025]
[ENSMUST00000121619]
[ENSMUST00000215912]
[ENSMUST00000216978]
|
| AlphaFold |
Q7TR16 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000075025
AA Change: R231P
PolyPhen 2
Score 0.891 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000074542
Gene: ENSMUSG00000057735
AA Change: R231P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
28 |
302 |
2.5e-51 |
PFAM |
|
Pfam:7tm_1
|
38 |
284 |
4.8e-19 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000121619
AA Change: R231P
PolyPhen 2
Score 0.891 (Sensitivity: 0.82; Specificity: 0.94)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000215912
AA Change: R231P
PolyPhen 2
Score 0.891 (Sensitivity: 0.82; Specificity: 0.94)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000216978
AA Change: R231P
PolyPhen 2
Score 0.891 (Sensitivity: 0.82; Specificity: 0.94)
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 97.8%
- 10x: 93.9%
- 20x: 83.8%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 21 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Cdh15 |
G |
C |
8: 123,584,234 (GRCm39) |
E112Q |
probably damaging |
Het |
| Clec7a |
T |
C |
6: 129,442,488 (GRCm39) |
I180V |
probably damaging |
Het |
| Csf3 |
A |
G |
11: 98,593,303 (GRCm39) |
D140G |
probably damaging |
Het |
| Cwf19l2 |
T |
C |
9: 3,430,810 (GRCm39) |
S381P |
probably benign |
Het |
| Eef1b2 |
A |
G |
1: 63,216,432 (GRCm39) |
D21G |
probably damaging |
Het |
| Fam83a |
A |
T |
15: 57,858,644 (GRCm39) |
Y228F |
possibly damaging |
Het |
| Gm5422 |
A |
G |
10: 31,126,719 (GRCm39) |
|
noncoding transcript |
Het |
| Itga5 |
A |
G |
15: 103,265,900 (GRCm39) |
V149A |
possibly damaging |
Het |
| Lrrfip1 |
A |
G |
1: 91,042,915 (GRCm39) |
H440R |
probably benign |
Het |
| Mfsd13a |
C |
T |
19: 46,354,943 (GRCm39) |
T40I |
probably benign |
Het |
| Mindy4 |
T |
A |
6: 55,261,798 (GRCm39) |
L569H |
possibly damaging |
Het |
| Mme |
A |
G |
3: 63,251,027 (GRCm39) |
K356R |
probably benign |
Het |
| Nfkb1 |
A |
G |
3: 135,300,688 (GRCm39) |
I626T |
probably benign |
Het |
| Or2f1b |
T |
C |
6: 42,739,601 (GRCm39) |
V205A |
possibly damaging |
Het |
| Or2t6 |
T |
C |
14: 14,176,029 (GRCm38) |
T18A |
probably benign |
Het |
| Or5k1b |
T |
C |
16: 58,581,413 (GRCm39) |
N42S |
probably damaging |
Het |
| Rock2 |
T |
A |
12: 17,015,470 (GRCm39) |
V789D |
probably damaging |
Het |
| Sav1 |
A |
G |
12: 70,015,953 (GRCm39) |
Y282H |
probably damaging |
Het |
| Ugcg |
C |
T |
4: 59,207,798 (GRCm39) |
P46S |
probably benign |
Het |
| Vmn2r89 |
T |
C |
14: 51,692,427 (GRCm39) |
F77L |
probably benign |
Het |
| Vps50 |
G |
A |
6: 3,594,884 (GRCm39) |
V816I |
probably damaging |
Het |
|
| Other mutations in Or4c100 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01311:Or4c100
|
APN |
2 |
88,356,104 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
IGL01727:Or4c100
|
APN |
2 |
88,356,271 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL01790:Or4c100
|
APN |
2 |
88,356,767 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01868:Or4c100
|
APN |
2 |
88,356,059 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
IGL03146:Or4c100
|
APN |
2 |
88,356,488 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
IGL03378:Or4c100
|
APN |
2 |
88,356,498 (GRCm39) |
nonsense |
probably null |
|
|
R0053:Or4c100
|
UTSW |
2 |
88,356,507 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0829:Or4c100
|
UTSW |
2 |
88,356,572 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1754:Or4c100
|
UTSW |
2 |
88,356,159 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2260:Or4c100
|
UTSW |
2 |
88,356,730 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R3426:Or4c100
|
UTSW |
2 |
88,356,208 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3781:Or4c100
|
UTSW |
2 |
88,356,709 (GRCm39) |
missense |
probably benign |
0.23 |
|
R4737:Or4c100
|
UTSW |
2 |
88,356,569 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4908:Or4c100
|
UTSW |
2 |
88,356,254 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4932:Or4c100
|
UTSW |
2 |
88,356,079 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5071:Or4c100
|
UTSW |
2 |
88,356,385 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5831:Or4c100
|
UTSW |
2 |
88,356,824 (GRCm39) |
nonsense |
probably null |
|
|
R6222:Or4c100
|
UTSW |
2 |
88,329,614 (GRCm39) |
missense |
probably benign |
0.34 |
|
R6370:Or4c100
|
UTSW |
2 |
88,329,712 (GRCm39) |
nonsense |
probably null |
|
|
R6802:Or4c100
|
UTSW |
2 |
88,355,941 (GRCm39) |
missense |
probably benign |
0.02 |
|
R6931:Or4c100
|
UTSW |
2 |
88,356,538 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
R7044:Or4c100
|
UTSW |
2 |
88,356,830 (GRCm39) |
missense |
probably benign |
|
|
R7121:Or4c100
|
UTSW |
2 |
88,356,170 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7166:Or4c100
|
UTSW |
2 |
88,355,990 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R7387:Or4c100
|
UTSW |
2 |
88,356,744 (GRCm39) |
nonsense |
probably null |
|
|
R7891:Or4c100
|
UTSW |
2 |
88,356,289 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7951:Or4c100
|
UTSW |
2 |
88,356,148 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7978:Or4c100
|
UTSW |
2 |
88,356,014 (GRCm39) |
nonsense |
probably null |
|
|
R8016:Or4c100
|
UTSW |
2 |
88,356,517 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8039:Or4c100
|
UTSW |
2 |
88,356,215 (GRCm39) |
missense |
probably benign |
0.07 |
|
R8389:Or4c100
|
UTSW |
2 |
88,355,931 (GRCm39) |
start codon destroyed |
probably null |
|
|
R9211:Or4c100
|
UTSW |
2 |
88,356,170 (GRCm39) |
missense |
probably benign |
0.08 |
|
R9279:Or4c100
|
UTSW |
2 |
88,356,211 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9691:Or4c100
|
UTSW |
2 |
88,356,421 (GRCm39) |
missense |
probably benign |
0.39 |
|
R9782:Or4c100
|
UTSW |
2 |
88,356,835 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGCCTGGATAGGGTCGTGTATTCAC -3'
(R):5'- AAGAGGGTTGAGCACAGGTGTTCC -3'
Sequencing Primer
(F):5'- CATTCTGTGGCCCAAATGTG -3'
(R):5'- GCACAGGTGTTCCAATTGTATAAAAC -3'
|
| Posted On |
2014-01-15 |
Incidental Mutation