Incidental Mutation 'R1195:Elmod1'
| ID |
101057 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Elmod1
|
| Ensembl Gene |
ENSMUSG00000041986 |
| Gene Name |
ELMO/CED-12 domain containing 1 |
| Synonyms |
|
| MMRRC Submission |
039267-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R1195 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
9 |
| Chromosomal Location |
53818741-53882585 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 53843052 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Cysteine
at position 42
(Y42C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000129082
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000048409]
[ENSMUST00000166580]
|
| AlphaFold |
Q3V1U8 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000048409
AA Change: Y42C
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000046191
Gene: ENSMUSG00000041986
AA Change: Y42C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ELMO_CED12
|
117 |
295 |
3.8e-49 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000166580
AA Change: Y42C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000129082
Gene: ENSMUSG00000041986
AA Change: Y42C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ELMO_CED12
|
114 |
296 |
9.6e-53 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000215313
|
| Meta Mutation Damage Score |
0.2960 |
| Coding Region Coverage |
- 1x: 98.7%
- 3x: 97.5%
- 10x: 93.1%
- 20x: 81.3%
|
| Validation Efficiency |
|
| MGI Phenotype |
PHENOTYPE: Mice homozygous for a spontaneous allele exhibit circling, absent startle reflex, deafness, organ of Corti degeneration and abnormal cochlear hair stereociliary bundle. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Agtr1a |
C |
A |
13: 30,565,901 (GRCm39) |
P322Q |
probably damaging |
Het |
| Amh |
AGCGCCTTGG |
AG |
10: 80,641,419 (GRCm39) |
|
probably null |
Het |
| Brd1 |
T |
C |
15: 88,585,014 (GRCm39) |
E940G |
probably benign |
Het |
| Cd28 |
C |
T |
1: 60,802,303 (GRCm39) |
T74I |
possibly damaging |
Het |
| Cntnap2 |
T |
A |
6: 46,460,902 (GRCm39) |
M646K |
probably benign |
Het |
| Cyb5d1 |
C |
T |
11: 69,285,797 (GRCm39) |
|
probably null |
Het |
| D6Ertd527e |
C |
G |
6: 87,088,506 (GRCm39) |
T223S |
unknown |
Het |
| Dst |
A |
G |
1: 34,250,235 (GRCm39) |
D4063G |
probably damaging |
Het |
| Hdac5 |
T |
C |
11: 102,096,332 (GRCm39) |
I310V |
probably damaging |
Het |
| Ighv10-1 |
A |
T |
12: 114,443,015 (GRCm39) |
|
probably benign |
Het |
| Igsf3 |
A |
G |
3: 101,365,419 (GRCm39) |
D1130G |
probably benign |
Het |
| Katnip |
A |
G |
7: 125,465,654 (GRCm39) |
R1343G |
probably damaging |
Het |
| Kdm4d |
A |
G |
9: 14,374,395 (GRCm39) |
S488P |
probably benign |
Het |
| Lingo2 |
A |
G |
4: 35,708,538 (GRCm39) |
Y481H |
probably damaging |
Het |
| Ltbp1 |
A |
G |
17: 75,532,280 (GRCm39) |
Q118R |
possibly damaging |
Het |
| Map3k20 |
C |
T |
2: 72,268,562 (GRCm39) |
P523L |
probably damaging |
Het |
| Msx1 |
A |
G |
5: 37,978,625 (GRCm39) |
Y297H |
probably damaging |
Het |
| Myo9a |
A |
G |
9: 59,802,483 (GRCm39) |
D1990G |
probably damaging |
Het |
| Niban2 |
T |
C |
2: 32,809,815 (GRCm39) |
V304A |
probably benign |
Het |
| Perp |
C |
A |
10: 18,731,483 (GRCm39) |
Y147* |
probably null |
Het |
| Prr16 |
A |
T |
18: 51,435,755 (GRCm39) |
D78V |
probably damaging |
Het |
| Rfx7 |
C |
T |
9: 72,525,228 (GRCm39) |
T806M |
probably damaging |
Het |
| Robo2 |
T |
C |
16: 73,713,016 (GRCm39) |
|
probably null |
Het |
| Sema5b |
A |
T |
16: 35,472,030 (GRCm39) |
E496V |
probably null |
Het |
| Shf |
G |
A |
2: 122,199,163 (GRCm39) |
P51S |
probably damaging |
Het |
| Spdl1 |
T |
C |
11: 34,710,644 (GRCm39) |
Y368C |
probably damaging |
Het |
| Sptbn2 |
G |
C |
19: 4,795,921 (GRCm39) |
R1700P |
possibly damaging |
Het |
| Tenm2 |
C |
T |
11: 35,954,004 (GRCm39) |
G1236R |
possibly damaging |
Het |
| Tln2 |
T |
G |
9: 67,165,848 (GRCm39) |
K1000Q |
probably damaging |
Het |
| Tmbim7 |
A |
G |
5: 3,711,943 (GRCm39) |
T63A |
probably benign |
Het |
| Tmed11 |
T |
C |
5: 108,926,885 (GRCm39) |
D129G |
possibly damaging |
Het |
| Ttc28 |
G |
A |
5: 111,373,543 (GRCm39) |
S962N |
probably damaging |
Het |
| Ttll6 |
T |
C |
11: 96,026,555 (GRCm39) |
I113T |
probably damaging |
Het |
| Uso1 |
T |
A |
5: 92,318,606 (GRCm39) |
F210L |
probably damaging |
Het |
| Uspl1 |
T |
A |
5: 149,131,131 (GRCm39) |
V224E |
probably benign |
Het |
| Zfp639 |
G |
A |
3: 32,573,345 (GRCm39) |
V86I |
possibly damaging |
Het |
|
| Other mutations in Elmod1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00391:Elmod1
|
APN |
9 |
53,831,682 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL01803:Elmod1
|
APN |
9 |
53,838,764 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01966:Elmod1
|
APN |
9 |
53,828,611 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02354:Elmod1
|
APN |
9 |
53,838,842 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02361:Elmod1
|
APN |
9 |
53,838,842 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03107:Elmod1
|
APN |
9 |
53,841,507 (GRCm39) |
splice site |
probably benign |
|
|
IGL03277:Elmod1
|
APN |
9 |
53,833,272 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0013:Elmod1
|
UTSW |
9 |
53,820,185 (GRCm39) |
splice site |
probably benign |
|
|
R0013:Elmod1
|
UTSW |
9 |
53,820,185 (GRCm39) |
splice site |
probably benign |
|
|
R0243:Elmod1
|
UTSW |
9 |
53,842,831 (GRCm39) |
splice site |
probably benign |
|
|
R0530:Elmod1
|
UTSW |
9 |
53,833,260 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0555:Elmod1
|
UTSW |
9 |
53,838,876 (GRCm39) |
splice site |
probably benign |
|
|
R0592:Elmod1
|
UTSW |
9 |
53,833,390 (GRCm39) |
splice site |
probably benign |
|
|
R0670:Elmod1
|
UTSW |
9 |
53,820,106 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1054:Elmod1
|
UTSW |
9 |
53,820,058 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1195:Elmod1
|
UTSW |
9 |
53,843,052 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1195:Elmod1
|
UTSW |
9 |
53,843,052 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1875:Elmod1
|
UTSW |
9 |
53,843,151 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4445:Elmod1
|
UTSW |
9 |
53,841,413 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4573:Elmod1
|
UTSW |
9 |
53,833,256 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5895:Elmod1
|
UTSW |
9 |
53,843,091 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6826:Elmod1
|
UTSW |
9 |
53,826,883 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7181:Elmod1
|
UTSW |
9 |
53,841,382 (GRCm39) |
splice site |
probably null |
|
|
R7334:Elmod1
|
UTSW |
9 |
53,841,508 (GRCm39) |
splice site |
probably null |
|
|
R7422:Elmod1
|
UTSW |
9 |
53,820,127 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7964:Elmod1
|
UTSW |
9 |
53,838,860 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8511:Elmod1
|
UTSW |
9 |
53,820,095 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9335:Elmod1
|
UTSW |
9 |
53,843,116 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9362:Elmod1
|
UTSW |
9 |
53,833,304 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
Z1088:Elmod1
|
UTSW |
9 |
53,826,898 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1176:Elmod1
|
UTSW |
9 |
53,854,144 (GRCm39) |
missense |
probably benign |
0.22 |
|
| Predicted Primers |
PCR Primer
(F):5'- CTCTCAGTGACGTTTCTGTTAAGGCAA -3'
(R):5'- CCGGAGTGGAGTAATGAACACCCA -3'
Sequencing Primer
(F):5'- CGTTTCTGTTAAGGCAATAACATAC -3'
(R):5'- CATGGACGCTGAAATCTAATGGC -3'
|
| Posted On |
2014-01-15 |
Incidental Mutation