Incidental Mutation 'R1167:Nek4'
ID101181
Institutional Source Beutler Lab
Gene Symbol Nek4
Ensembl Gene ENSMUSG00000021918
Gene NameNIMA (never in mitosis gene a)-related expressed kinase 4
Synonyms
MMRRC Submission 039240-MU
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.351) question?
Stock #R1167 (G1)
Quality Score225
Status Not validated
Chromosome14
Chromosomal Location30951377-30988821 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 30974345 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Histidine at position 499 (R499H)
Ref Sequence ENSEMBL: ENSMUSP00000154090 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000050171] [ENSMUST00000226551] [ENSMUST00000228328]
Predicted Effect probably benign
Transcript: ENSMUST00000050171
SMART Domains Protein: ENSMUSP00000057915
Gene: ENSMUSG00000021918

DomainStartEndE-ValueType
S_TKc 6 261 6.93e-91 SMART
low complexity region 429 439 N/A INTRINSIC
low complexity region 627 647 N/A INTRINSIC
low complexity region 751 767 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000226146
AA Change: R336H
Predicted Effect probably benign
Transcript: ENSMUST00000226551
Predicted Effect possibly damaging
Transcript: ENSMUST00000228328
AA Change: R499H

PolyPhen 2 Score 0.684 (Sensitivity: 0.86; Specificity: 0.92)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000228392
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.4%
  • 10x: 96.6%
  • 20x: 93.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a serine/threonine protein kinase required for normal entry into replicative senescence. The encoded protein also is involved in cell cycle arrest in response to double-stranded DNA damage. Finally, this protein plays a role in maintaining cilium integrity, and defects in this gene have been associated with ciliopathies. [provided by RefSeq, Jan 2017]
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930433I11Rik A T 7: 40,993,579 D315V probably damaging Het
4931440F15Rik C T 11: 29,823,567 R630H probably damaging Het
Acr T C 15: 89,573,974 I286T probably damaging Het
Adnp A G 2: 168,184,500 S292P probably benign Het
Apol6 T A 15: 77,047,108 Y17* probably null Het
Arhgap22 A G 14: 33,343,307 probably null Het
Bfar A G 16: 13,698,894 K202E possibly damaging Het
Bmpr2 A T 1: 59,859,304 S470C probably damaging Het
Cep135 A G 5: 76,624,637 E623G probably damaging Het
Clcn3 A G 8: 60,922,788 probably null Het
Clptm1 A T 7: 19,634,211 M523K probably damaging Het
Cyp26b1 A G 6: 84,584,330 W117R probably damaging Het
Dnmt3c T G 2: 153,711,781 probably null Het
Dst A G 1: 34,223,858 E2212G probably damaging Het
Edrf1 A G 7: 133,644,066 T238A probably benign Het
Elmo1 T C 13: 20,185,455 V10A probably damaging Het
Ermp1 A G 19: 29,628,679 S225P possibly damaging Het
Fes A T 7: 80,383,109 L296Q probably damaging Het
Foxn1 A T 11: 78,359,066 N544K probably damaging Het
Gga1 C G 15: 78,888,170 N223K probably damaging Het
Gm10608 CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 9: 119,160,716 probably null Het
Gm4884 A T 7: 41,043,912 Q435L possibly damaging Het
Gm8444 T C 15: 81,843,380 probably benign Het
Gm8882 G A 6: 132,361,590 P222S unknown Het
Ift140 T G 17: 25,035,745 S131A probably benign Het
Ipo4 A G 14: 55,635,020 L88P probably damaging Het
Itgal G A 7: 127,300,939 S123N probably damaging Het
Kcnn3 C T 3: 89,564,952 Q344* probably null Het
Lrrc8e A T 8: 4,235,337 M521L probably benign Het
Myocd G T 11: 65,196,377 D113E possibly damaging Het
Notch3 T C 17: 32,122,745 D2011G possibly damaging Het
Ola1 A G 2: 73,097,194 V347A probably damaging Het
Olfr1037 A G 2: 86,085,291 V162A probably benign Het
Olfr1339 C A 4: 118,734,632 F34L possibly damaging Het
Olfr790 G A 10: 129,501,150 V89I probably benign Het
Oxct2b A G 4: 123,117,585 T433A probably damaging Het
P2ry14 T C 3: 59,115,131 R312G probably damaging Het
Pbrm1 A G 14: 31,050,142 N398D probably damaging Het
Pdc T C 1: 150,333,245 Y160H probably damaging Het
Pdlim2 C T 14: 70,164,779 R296H probably damaging Het
Pop4 A T 7: 38,263,269 D190E probably benign Het
R3hdm4 A G 10: 79,912,073 probably null Het
Rab1a C A 11: 20,223,172 T91K possibly damaging Het
Rad9a A G 19: 4,197,502 V215A possibly damaging Het
Rassf3 A G 10: 121,416,254 V84A probably damaging Het
Rftn2 G A 1: 55,204,299 T270M probably damaging Het
Rho A G 6: 115,935,423 T100A probably damaging Het
Rnft2 T C 5: 118,228,882 I264V possibly damaging Het
Robo3 A T 9: 37,423,907 Y567* probably null Het
Rpp14 T A 14: 8,083,705 probably null Het
Rtkn2 T C 10: 67,997,620 S98P probably damaging Het
Ryr2 A G 13: 11,660,113 V3376A possibly damaging Het
Sbf2 A T 7: 110,364,549 W1030R probably damaging Het
Setbp1 G A 18: 78,857,236 A1072V possibly damaging Het
Slc4a10 A G 2: 62,228,574 K142E probably damaging Het
Slc52a2 A G 15: 76,539,591 E40G probably benign Het
Slc8a2 A G 7: 16,157,387 N784S possibly damaging Het
Spats2l A T 1: 57,943,111 Q384L probably damaging Het
Steap4 A C 5: 7,976,520 K161T probably benign Het
Taf10 T C 7: 105,743,231 S188G probably benign Het
Tbc1d4 C T 14: 101,608,019 D148N probably damaging Het
Tenm2 T G 11: 36,864,684 K162N probably benign Het
Tmem147 A G 7: 30,727,796 V146A probably benign Het
Tnfsf8 A G 4: 63,837,086 S100P possibly damaging Het
Trim56 T C 5: 137,112,520 Y714C probably damaging Het
Ubxn8 A G 8: 33,641,901 S13P probably damaging Het
Usp49 A G 17: 47,672,226 D52G possibly damaging Het
Vegfc A C 8: 54,186,043 Y408S probably benign Het
Vmn2r77 A G 7: 86,801,746 N280S probably benign Het
Vmn2r8 T A 5: 108,803,176 L134F probably benign Het
Wdfy3 T A 5: 101,875,931 I2437F probably benign Het
Wwc2 A T 8: 47,858,779 L783* probably null Het
Zer1 C T 2: 30,108,246 R351H probably benign Het
Zfp715 A T 7: 43,298,437 F700I possibly damaging Het
Zfp995 G A 17: 21,879,979 H425Y probably damaging Het
Other mutations in Nek4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01124:Nek4 APN 14 30970262 missense probably benign 0.00
IGL01746:Nek4 APN 14 30977584 splice site probably null
IGL02403:Nek4 APN 14 30964051 nonsense probably null
IGL02606:Nek4 APN 14 30963959 missense probably benign 0.01
IGL03261:Nek4 APN 14 30975290 missense probably benign 0.05
R0266:Nek4 UTSW 14 30957296 missense probably damaging 1.00
R0436:Nek4 UTSW 14 30970472 missense probably damaging 0.96
R0520:Nek4 UTSW 14 30959306 splice site probably benign
R0523:Nek4 UTSW 14 30980038 missense probably benign 0.18
R0849:Nek4 UTSW 14 30957296 missense probably damaging 1.00
R1465:Nek4 UTSW 14 30956887 missense probably damaging 1.00
R1465:Nek4 UTSW 14 30956887 missense probably damaging 1.00
R1484:Nek4 UTSW 14 30982333 missense possibly damaging 0.56
R1563:Nek4 UTSW 14 30982451 missense probably damaging 1.00
R1616:Nek4 UTSW 14 30987137 missense probably damaging 0.98
R1670:Nek4 UTSW 14 30982427 missense probably damaging 1.00
R1991:Nek4 UTSW 14 30956953 missense probably damaging 0.98
R2045:Nek4 UTSW 14 30953923 missense probably damaging 1.00
R2157:Nek4 UTSW 14 30979968 intron probably null
R2925:Nek4 UTSW 14 30951710 missense probably benign 0.29
R4342:Nek4 UTSW 14 30953906 missense probably damaging 1.00
R5964:Nek4 UTSW 14 30957079 critical splice donor site probably null
R6030:Nek4 UTSW 14 30956933 missense probably damaging 1.00
R6030:Nek4 UTSW 14 30956933 missense probably damaging 1.00
R6171:Nek4 UTSW 14 30970347 missense probably benign 0.01
R7145:Nek4 UTSW 14 30982348 missense probably damaging 0.96
Predicted Primers
Posted On2014-01-15