Incidental Mutation 'IGL01657:Slc22a18'
ID |
103036 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Slc22a18
|
Ensembl Gene |
ENSMUSG00000000154 |
Gene Name |
solute carrier family 22 (organic cation transporter), member 18 |
Synonyms |
Orctl2, TSSC5, IMPT1, BWSCR1A, Impt1, Slc22a1l, BWR1A, p45-BWR1A |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.063)
|
Stock # |
IGL01657
|
Quality Score |
|
Status
|
|
Chromosome |
7 |
Chromosomal Location |
143027502-143053071 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to G
at 143052837 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Arginine
at position 354
(L354R)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000101537
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000010904]
[ENSMUST00000052348]
[ENSMUST00000105917]
[ENSMUST00000141988]
[ENSMUST00000145943]
[ENSMUST00000150791]
[ENSMUST00000207425]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably benign
Transcript: ENSMUST00000010904
|
SMART Domains |
Protein: ENSMUSP00000010904 Gene: ENSMUSG00000010760
Domain | Start | End | E-Value | Type |
PH
|
18 |
111 |
1.54e-5 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000052348
AA Change: L354R
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000056082 Gene: ENSMUSG00000000154 AA Change: L354R
Domain | Start | End | E-Value | Type |
Pfam:MFS_1
|
14 |
339 |
1.1e-31 |
PFAM |
Pfam:MFS_1
|
229 |
410 |
5.2e-11 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000105917
AA Change: L354R
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000101537 Gene: ENSMUSG00000000154 AA Change: L354R
Domain | Start | End | E-Value | Type |
Pfam:MFS_1
|
14 |
337 |
7.8e-32 |
PFAM |
Pfam:MFS_3
|
66 |
346 |
6.5e-9 |
PFAM |
Pfam:MFS_1
|
229 |
410 |
3.2e-11 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000141988
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000145943
|
SMART Domains |
Protein: ENSMUSP00000115345 Gene: ENSMUSG00000000154
Domain | Start | End | E-Value | Type |
transmembrane domain
|
13 |
35 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000150791
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000207425
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000207561
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is one of several tumor-suppressing subtransferable fragments located in the imprinted gene domain of 11p15.5, an important tumor-suppressor gene region. Alterations in this region have been associated with the Beckwith-Wiedemann syndrome, Wilms tumor, rhabdomyosarcoma, adrenocortical carcinoma, and lung, ovarian, and breast cancer. This gene is imprinted, with preferential expression from the maternal allele. Mutations in this gene have been found in Wilms' tumor and lung cancer. This protein may act as a transporter of organic cations, and have a role in the transport of chloroquine and quinidine-related compounds in kidney. Several alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Oct 2015]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 40 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adgrb3 |
A |
G |
1: 25,865,574 (GRCm39) |
F90L |
probably benign |
Het |
Anapc4 |
T |
A |
5: 53,021,968 (GRCm39) |
Y683* |
probably null |
Het |
Astn2 |
T |
G |
4: 65,570,186 (GRCm39) |
D773A |
probably damaging |
Het |
Atp2b3 |
T |
C |
X: 72,588,966 (GRCm39) |
|
probably benign |
Het |
Atp8b5 |
T |
C |
4: 43,291,693 (GRCm39) |
M22T |
probably benign |
Het |
Birc6 |
T |
A |
17: 74,967,606 (GRCm39) |
L4169H |
probably damaging |
Het |
Cdc42bpa |
T |
C |
1: 179,939,431 (GRCm39) |
V81A |
probably benign |
Het |
Clcn2 |
A |
T |
16: 20,532,369 (GRCm39) |
C80S |
probably damaging |
Het |
Clu |
C |
T |
14: 66,217,121 (GRCm39) |
A318V |
possibly damaging |
Het |
Csnk1g2 |
A |
G |
10: 80,475,463 (GRCm39) |
H378R |
probably benign |
Het |
Decr2 |
T |
A |
17: 26,301,926 (GRCm39) |
D268V |
probably damaging |
Het |
Dpp3 |
T |
C |
19: 4,968,332 (GRCm39) |
T247A |
possibly damaging |
Het |
Eif4g1 |
A |
G |
16: 20,500,966 (GRCm39) |
N774D |
possibly damaging |
Het |
Epha4 |
A |
T |
1: 77,403,475 (GRCm39) |
V344E |
probably damaging |
Het |
Epha6 |
A |
C |
16: 59,659,666 (GRCm39) |
N817K |
probably benign |
Het |
Ggcx |
T |
A |
6: 72,406,941 (GRCm39) |
|
probably null |
Het |
Gm1965 |
C |
T |
6: 89,123,648 (GRCm39) |
|
noncoding transcript |
Het |
Gmnn |
T |
C |
13: 24,937,687 (GRCm39) |
E101G |
probably damaging |
Het |
Grik2 |
C |
T |
10: 49,404,082 (GRCm39) |
|
probably null |
Het |
H2-M11 |
T |
A |
17: 36,858,465 (GRCm39) |
D86E |
probably benign |
Het |
Il6st |
T |
A |
13: 112,618,077 (GRCm39) |
W164R |
probably damaging |
Het |
Ilvbl |
G |
T |
10: 78,412,602 (GRCm39) |
V108L |
possibly damaging |
Het |
Klk10 |
A |
G |
7: 43,431,013 (GRCm39) |
K19E |
possibly damaging |
Het |
Mbd4 |
G |
T |
6: 115,826,598 (GRCm39) |
T131N |
probably damaging |
Het |
Ncapd3 |
T |
C |
9: 26,983,120 (GRCm39) |
V956A |
possibly damaging |
Het |
Nif3l1 |
A |
C |
1: 58,494,771 (GRCm39) |
T247P |
probably damaging |
Het |
Nrcam |
T |
C |
12: 44,606,583 (GRCm39) |
V443A |
probably damaging |
Het |
Or4c35 |
A |
G |
2: 89,808,221 (GRCm39) |
Y33C |
probably damaging |
Het |
Pigk |
T |
A |
3: 152,428,157 (GRCm39) |
H61Q |
probably damaging |
Het |
Pla2g4d |
C |
A |
2: 120,105,768 (GRCm39) |
V431F |
possibly damaging |
Het |
Pxt1 |
A |
T |
17: 29,153,778 (GRCm39) |
H18Q |
possibly damaging |
Het |
Rpusd4 |
T |
C |
9: 35,184,757 (GRCm39) |
|
probably benign |
Het |
Slc26a10 |
A |
G |
10: 127,010,903 (GRCm39) |
V443A |
probably damaging |
Het |
Smpx |
A |
G |
X: 156,497,676 (GRCm39) |
|
probably benign |
Het |
Sptan1 |
A |
G |
2: 29,908,491 (GRCm39) |
S1751G |
probably benign |
Het |
Ush2a |
C |
T |
1: 188,558,658 (GRCm39) |
T3629I |
probably benign |
Het |
Vcan |
C |
T |
13: 89,838,705 (GRCm39) |
V2280M |
probably damaging |
Het |
Vmn1r30 |
T |
C |
6: 58,412,619 (GRCm39) |
E71G |
probably benign |
Het |
Vmn2r100 |
A |
T |
17: 19,746,178 (GRCm39) |
I446F |
possibly damaging |
Het |
Vmn2r75 |
A |
T |
7: 85,813,455 (GRCm39) |
V449D |
probably damaging |
Het |
|
Other mutations in Slc22a18 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01888:Slc22a18
|
APN |
7 |
143,033,053 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02458:Slc22a18
|
APN |
7 |
143,046,574 (GRCm39) |
splice site |
probably benign |
|
IGL02626:Slc22a18
|
APN |
7 |
143,052,837 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4810001:Slc22a18
|
UTSW |
7 |
143,046,668 (GRCm39) |
missense |
probably benign |
0.00 |
R0294:Slc22a18
|
UTSW |
7 |
143,046,578 (GRCm39) |
critical splice acceptor site |
probably null |
|
R0571:Slc22a18
|
UTSW |
7 |
143,045,598 (GRCm39) |
splice site |
probably benign |
|
R1951:Slc22a18
|
UTSW |
7 |
143,029,984 (GRCm39) |
missense |
probably damaging |
1.00 |
R1953:Slc22a18
|
UTSW |
7 |
143,029,984 (GRCm39) |
missense |
probably damaging |
1.00 |
R2352:Slc22a18
|
UTSW |
7 |
143,051,152 (GRCm39) |
missense |
probably benign |
0.02 |
R3900:Slc22a18
|
UTSW |
7 |
143,033,507 (GRCm39) |
missense |
probably damaging |
1.00 |
R5317:Slc22a18
|
UTSW |
7 |
143,052,896 (GRCm39) |
missense |
probably damaging |
1.00 |
R5428:Slc22a18
|
UTSW |
7 |
143,033,082 (GRCm39) |
missense |
probably damaging |
1.00 |
R7672:Slc22a18
|
UTSW |
7 |
143,044,557 (GRCm39) |
missense |
probably damaging |
1.00 |
R7684:Slc22a18
|
UTSW |
7 |
143,044,577 (GRCm39) |
missense |
probably benign |
0.00 |
R7688:Slc22a18
|
UTSW |
7 |
143,033,560 (GRCm39) |
missense |
probably damaging |
1.00 |
R8130:Slc22a18
|
UTSW |
7 |
143,052,911 (GRCm39) |
missense |
probably damaging |
1.00 |
R8443:Slc22a18
|
UTSW |
7 |
143,051,123 (GRCm39) |
missense |
probably damaging |
0.96 |
R9308:Slc22a18
|
UTSW |
7 |
143,044,617 (GRCm39) |
missense |
probably benign |
0.13 |
R9784:Slc22a18
|
UTSW |
7 |
143,046,678 (GRCm39) |
missense |
probably benign |
0.02 |
Z1177:Slc22a18
|
UTSW |
7 |
143,050,779 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2014-01-21 |