Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01674:Cadps2'

103591

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Cadps2

Ensembl Gene

ENSMUSG00000017978

Gene Name

Ca2+-dependent activator protein for secretion 2

Synonyms

Caps2, A230044C21Rik, cpd2

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01674

Quality Score

Status

Chromosome

Chromosomal Location

23262772-23839420 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 23355851 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 859 (L859P)

Ref Sequence

ENSEMBL: ENSMUSP00000128905 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000018122] [ENSMUST00000069074] [ENSMUST00000115358] [ENSMUST00000115361] [ENSMUST00000125350] [ENSMUST00000142913] [ENSMUST00000163871] [ENSMUST00000166458]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000018122
AA Change: L859P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000018122
Gene: ENSMUSG00000017978
AA Change: L859P

Domain	Start	End	E-Value	Type
low complexity region	5	21	N/A	INTRINSIC
low complexity region	31	65	N/A	INTRINSIC
low complexity region	114	126	N/A	INTRINSIC
coiled coil region	265	285	N/A	INTRINSIC
C2	369	467	1.51e-1	SMART
PH	492	596	2.94e-11	SMART
DUF1041	801	902	1.14e-52	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000069074
AA Change: L855P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000064876
Gene: ENSMUSG00000017978
AA Change: L855P

Domain	Start	End	E-Value	Type
low complexity region	5	21	N/A	INTRINSIC
low complexity region	31	65	N/A	INTRINSIC
low complexity region	114	126	N/A	INTRINSIC
coiled coil region	265	285	N/A	INTRINSIC
C2	369	467	1.51e-1	SMART
PH	492	596	2.94e-11	SMART
DUF1041	801	895	5.54e-51	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000115358
AA Change: L859P

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000111015
Gene: ENSMUSG00000017978
AA Change: L859P

Domain	Start	End	E-Value	Type
low complexity region	5	21	N/A	INTRINSIC
low complexity region	31	65	N/A	INTRINSIC
low complexity region	114	126	N/A	INTRINSIC
coiled coil region	265	285	N/A	INTRINSIC
C2	369	467	1.51e-1	SMART
PH	492	596	2.94e-11	SMART
DUF1041	801	902	1.14e-52	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000115361
AA Change: L852P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000111018
Gene: ENSMUSG00000017978
AA Change: L852P

Domain	Start	End	E-Value	Type
low complexity region	5	21	N/A	INTRINSIC
low complexity region	31	65	N/A	INTRINSIC
low complexity region	114	126	N/A	INTRINSIC
coiled coil region	265	285	N/A	INTRINSIC
C2	369	467	1.51e-1	SMART
PH	492	596	2.94e-11	SMART
DUF1041	801	892	1.9e-49	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000125350
AA Change: L497P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000115866
Gene: ENSMUSG00000017978
AA Change: L497P

Domain	Start	End	E-Value	Type
C2	14	112	1.51e-1	SMART
PH	137	241	2.94e-11	SMART
DUF1041	446	537	1.9e-49	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000142913
AA Change: L830P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000138167
Gene: ENSMUSG00000017978
AA Change: L830P

Domain	Start	End	E-Value	Type
low complexity region	5	21	N/A	INTRINSIC
low complexity region	22	39	N/A	INTRINSIC
low complexity region	85	97	N/A	INTRINSIC
coiled coil region	236	256	N/A	INTRINSIC
C2	340	438	1.51e-1	SMART
PH	463	567	2.94e-11	SMART
DUF1041	772	873	1.14e-52	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156986

Predicted Effect

probably damaging
Transcript: ENSMUST00000163871
AA Change: L859P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000128905
Gene: ENSMUSG00000017978
AA Change: L859P

Domain	Start	End	E-Value	Type
low complexity region	5	21	N/A	INTRINSIC
low complexity region	31	65	N/A	INTRINSIC
low complexity region	114	126	N/A	INTRINSIC
coiled coil region	265	285	N/A	INTRINSIC
C2	369	467	1.51e-1	SMART
PH	492	596	2.94e-11	SMART
DUF1041	801	902	7.2e-50	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000166458
AA Change: L830P

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000125972
Gene: ENSMUSG00000017978
AA Change: L830P

Domain	Start	End	E-Value	Type
low complexity region	5	21	N/A	INTRINSIC
low complexity region	85	97	N/A	INTRINSIC
coiled coil region	236	256	N/A	INTRINSIC
C2	340	438	1.51e-1	SMART
PH	463	567	2.94e-11	SMART
DUF1041	772	873	1.05e-51	SMART

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the calcium-dependent activator of secretion (CAPS) protein family, which are calcium binding proteins that regulate the exocytosis of synaptic and dense-core vesicles in neurons and neuroendocrine cells. Mutations in this gene may contribute to autism susceptibility. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2009]
PHENOTYPE: Mice homozygous for a null allele exhibit defects in cerebellum, Purkinje cell and interneuron morphology, paired-pulse facilitation, and behaviors including emotional behavior, vestibuoocular reflex, circadium and sleep patterns, social investigation and nurturing behavior. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 36 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Arhgef39	A	G	4: 43,497,590 (GRCm39)	L222P	probably damaging	Het
Art3	T	A	5: 92,551,473 (GRCm39)	Y17*	probably null	Het
Celsr2	A	G	3: 108,322,159 (GRCm39)	Y218H	probably damaging	Het
Ces5a	A	G	8: 94,228,847 (GRCm39)	V461A	probably damaging	Het
Clic4	C	A	4: 134,966,204 (GRCm39)	V51L	probably benign	Het
Col6a3	A	G	1: 90,730,236 (GRCm39)	L1083P	probably damaging	Het
Cul5	T	C	9: 53,546,307 (GRCm39)	E328G	probably damaging	Het
Erap1	T	C	13: 74,812,350 (GRCm39)		probably benign	Het
Fn1	G	A	1: 71,645,900 (GRCm39)	P1527L	probably damaging	Het
Gm20547	T	A	17: 35,100,631 (GRCm39)	Q63L	probably benign	Het
Gm5089	T	C	14: 122,673,575 (GRCm39)	T49A	unknown	Het
Ippk	T	C	13: 49,602,740 (GRCm39)	L362S	probably damaging	Het
Krt23	T	C	11: 99,377,593 (GRCm39)	M138V	probably benign	Het
Magi3	A	G	3: 104,013,037 (GRCm39)		probably benign	Het
Mcc	T	A	18: 44,624,223 (GRCm39)	I266F	probably benign	Het
Mcph1	A	G	8: 18,681,535 (GRCm39)	E224G	probably damaging	Het
Neurod4	A	T	10: 130,106,887 (GRCm39)	L129H	probably damaging	Het
Or14j5	T	A	17: 37,920,853 (GRCm39)	D263V	probably damaging	Het
Or4c123	T	A	2: 89,127,014 (GRCm39)	N200I	probably damaging	Het
Or5b24	T	C	19: 12,912,926 (GRCm39)	S275P	probably damaging	Het
Or8h7	T	C	2: 86,721,093 (GRCm39)	Y142C	probably benign	Het
Piezo2	A	T	18: 63,160,630 (GRCm39)	I2342N	probably damaging	Het
Pnpt1	A	G	11: 29,105,787 (GRCm39)	Q632R	probably benign	Het
Ppp2r2c	T	C	5: 37,097,570 (GRCm39)	M252T	possibly damaging	Het
Ppp4r2	A	G	6: 100,841,644 (GRCm39)	N142D	possibly damaging	Het
Prex2	G	T	1: 11,240,965 (GRCm39)	K1024N	probably damaging	Het
Rimklb	T	A	6: 122,436,129 (GRCm39)	I150F	probably damaging	Het
Slco4c1	T	C	1: 96,770,218 (GRCm39)	Q282R	probably damaging	Het
Tmem92	T	C	11: 94,669,519 (GRCm39)	E148G	probably damaging	Het
Traf7	T	C	17: 24,729,349 (GRCm39)		probably benign	Het
Ubr5	G	A	15: 37,998,623 (GRCm39)	T1622M	probably damaging	Het
Vmn1r5	T	A	6: 56,962,911 (GRCm39)	S195R	probably damaging	Het
Vmn2r67	C	T	7: 84,785,651 (GRCm39)	V785I	probably damaging	Het
Ythdc2	G	A	18: 44,993,471 (GRCm39)	D839N	probably benign	Het
Zfp184	T	C	13: 22,134,395 (GRCm39)		probably benign	Het
Zfp654	T	C	16: 64,605,004 (GRCm39)	N525S	probably benign	Het

Other mutations in Cadps2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01014:Cadps2	APN	6	23,496,873 (GRCm39)	missense	possibly damaging	0.84
IGL01105:Cadps2	APN	6	23,321,699 (GRCm39)	splice site	probably benign
IGL01317:Cadps2	APN	6	23,314,172 (GRCm39)	missense	possibly damaging	0.76
IGL01409:Cadps2	APN	6	23,587,440 (GRCm39)	missense	probably damaging	1.00
IGL01477:Cadps2	APN	6	23,263,672 (GRCm39)	missense	probably damaging	1.00
IGL01620:Cadps2	APN	6	23,587,461 (GRCm39)	missense	probably benign	0.19
IGL01675:Cadps2	APN	6	23,382,904 (GRCm39)	missense	probably damaging	1.00
IGL01895:Cadps2	APN	6	23,427,274 (GRCm39)	missense	probably damaging	0.98
IGL02095:Cadps2	APN	6	23,427,309 (GRCm39)	missense	probably benign	0.01
IGL02200:Cadps2	APN	6	23,385,527 (GRCm39)	missense	probably damaging	1.00
IGL02380:Cadps2	APN	6	23,287,731 (GRCm39)	missense	probably benign	0.11
IGL02680:Cadps2	APN	6	23,838,895 (GRCm39)	missense	probably damaging	0.99
IGL02814:Cadps2	APN	6	23,321,706 (GRCm39)	missense	probably damaging	1.00
IGL02940:Cadps2	APN	6	23,496,808 (GRCm39)	missense	probably benign	0.08
IGL03061:Cadps2	APN	6	23,287,659 (GRCm39)	splice site	probably null
IGL03233:Cadps2	APN	6	23,263,600 (GRCm39)	missense	probably benign	0.10
R0193:Cadps2	UTSW	6	23,599,439 (GRCm39)	missense	probably benign	0.00
R0389:Cadps2	UTSW	6	23,321,781 (GRCm39)	missense	possibly damaging	0.88
R0571:Cadps2	UTSW	6	23,583,411 (GRCm39)	missense	probably damaging	1.00
R0595:Cadps2	UTSW	6	23,321,703 (GRCm39)	critical splice donor site	probably null
R0620:Cadps2	UTSW	6	23,583,395 (GRCm39)	missense	probably damaging	1.00
R0723:Cadps2	UTSW	6	23,287,697 (GRCm39)	missense	probably damaging	0.99
R0831:Cadps2	UTSW	6	23,321,739 (GRCm39)	missense	possibly damaging	0.88
R0836:Cadps2	UTSW	6	23,328,775 (GRCm39)	splice site	probably benign
R0942:Cadps2	UTSW	6	23,263,561 (GRCm39)	missense	probably damaging	1.00
R1099:Cadps2	UTSW	6	23,599,478 (GRCm39)	missense	probably damaging	1.00
R1120:Cadps2	UTSW	6	23,838,793 (GRCm39)	missense	probably damaging	1.00
R1216:Cadps2	UTSW	6	23,583,472 (GRCm39)	splice site	probably benign
R1575:Cadps2	UTSW	6	23,429,217 (GRCm39)	missense	probably damaging	1.00
R1780:Cadps2	UTSW	6	23,320,931 (GRCm39)	critical splice donor site	probably null
R1924:Cadps2	UTSW	6	23,688,857 (GRCm39)	missense	probably damaging	0.99
R1944:Cadps2	UTSW	6	23,599,479 (GRCm39)	missense	probably damaging	0.99
R1956:Cadps2	UTSW	6	23,287,685 (GRCm39)	missense	probably damaging	1.00
R1986:Cadps2	UTSW	6	23,323,379 (GRCm39)	missense	probably damaging	1.00
R2045:Cadps2	UTSW	6	23,839,121 (GRCm39)	missense	possibly damaging	0.73
R2146:Cadps2	UTSW	6	23,838,998 (GRCm39)	intron	probably benign
R2147:Cadps2	UTSW	6	23,838,998 (GRCm39)	intron	probably benign
R2148:Cadps2	UTSW	6	23,838,998 (GRCm39)	intron	probably benign
R2150:Cadps2	UTSW	6	23,838,998 (GRCm39)	intron	probably benign
R2219:Cadps2	UTSW	6	23,410,831 (GRCm39)	missense	probably damaging	1.00
R2264:Cadps2	UTSW	6	23,323,339 (GRCm39)	missense	probably benign	0.15
R2338:Cadps2	UTSW	6	23,838,977 (GRCm39)	splice site	probably benign
R3861:Cadps2	UTSW	6	23,355,860 (GRCm39)	missense	probably damaging	1.00
R3898:Cadps2	UTSW	6	23,528,125 (GRCm39)	missense	probably damaging	1.00
R3982:Cadps2	UTSW	6	23,263,530 (GRCm39)	utr 3 prime	probably benign
R4213:Cadps2	UTSW	6	23,599,462 (GRCm39)	missense	probably damaging	1.00
R4384:Cadps2	UTSW	6	23,412,987 (GRCm39)	missense	probably benign	0.18
R4432:Cadps2	UTSW	6	23,626,737 (GRCm39)	missense	probably damaging	0.99
R4609:Cadps2	UTSW	6	23,587,578 (GRCm39)	missense	probably damaging	1.00
R4806:Cadps2	UTSW	6	23,688,859 (GRCm39)	missense	probably damaging	0.96
R4977:Cadps2	UTSW	6	23,599,478 (GRCm39)	missense	probably damaging	1.00
R5174:Cadps2	UTSW	6	23,287,742 (GRCm39)	missense	probably damaging	1.00
R5267:Cadps2	UTSW	6	23,626,667 (GRCm39)	missense	possibly damaging	0.79
R5389:Cadps2	UTSW	6	23,329,103 (GRCm39)	missense	probably damaging	1.00
R5737:Cadps2	UTSW	6	23,328,804 (GRCm39)	missense	probably benign	0.28
R6074:Cadps2	UTSW	6	23,626,670 (GRCm39)	missense	probably damaging	1.00
R6254:Cadps2	UTSW	6	23,329,162 (GRCm39)	critical splice acceptor site	probably null
R6323:Cadps2	UTSW	6	23,263,577 (GRCm39)	missense	probably benign	0.04
R6463:Cadps2	UTSW	6	23,323,333 (GRCm39)	nonsense	probably null
R6907:Cadps2	UTSW	6	23,599,505 (GRCm39)	missense	probably damaging	1.00
R6940:Cadps2	UTSW	6	23,302,491 (GRCm39)	missense	probably damaging	1.00
R6964:Cadps2	UTSW	6	23,583,458 (GRCm39)	missense	probably damaging	1.00
R7079:Cadps2	UTSW	6	23,323,408 (GRCm39)	missense	probably damaging	1.00
R7139:Cadps2	UTSW	6	23,410,888 (GRCm39)	missense	probably damaging	1.00
R7156:Cadps2	UTSW	6	23,688,955 (GRCm39)	missense	probably benign	0.02
R7184:Cadps2	UTSW	6	23,583,428 (GRCm39)	missense	probably benign	0.18
R7325:Cadps2	UTSW	6	23,409,934 (GRCm39)	missense	unknown
R7526:Cadps2	UTSW	6	23,496,850 (GRCm39)	missense	probably damaging	1.00
R7546:Cadps2	UTSW	6	23,626,607 (GRCm39)	missense	probably benign	0.15
R7772:Cadps2	UTSW	6	23,390,445 (GRCm39)	missense	probably benign	0.00
R7870:Cadps2	UTSW	6	23,263,641 (GRCm39)	missense	probably benign	0.14
R8040:Cadps2	UTSW	6	23,412,942 (GRCm39)	splice site	probably benign
R8048:Cadps2	UTSW	6	23,838,862 (GRCm39)	missense	probably benign	0.14
R8082:Cadps2	UTSW	6	23,323,313 (GRCm39)	missense	probably damaging	1.00
R8100:Cadps2	UTSW	6	23,838,808 (GRCm39)	missense	probably damaging	1.00
R8115:Cadps2	UTSW	6	23,328,897 (GRCm39)	missense	probably benign	0.00
R8497:Cadps2	UTSW	6	23,355,918 (GRCm39)	missense	probably benign	0.27
R8768:Cadps2	UTSW	6	23,382,938 (GRCm39)	missense	probably damaging	1.00
R8783:Cadps2	UTSW	6	23,302,303 (GRCm39)	missense	possibly damaging	0.57
R8804:Cadps2	UTSW	6	23,496,805 (GRCm39)	missense	probably damaging	1.00
R8832:Cadps2	UTSW	6	23,587,536 (GRCm39)	missense	possibly damaging	0.52
R8848:Cadps2	UTSW	6	23,344,256 (GRCm39)	missense	probably damaging	1.00
R8854:Cadps2	UTSW	6	23,385,507 (GRCm39)	missense	probably damaging	1.00
R8896:Cadps2	UTSW	6	23,410,876 (GRCm39)	missense	probably damaging	1.00
R8910:Cadps2	UTSW	6	23,344,223 (GRCm39)	missense	probably benign	0.11
R8921:Cadps2	UTSW	6	23,302,300 (GRCm39)	missense	probably benign	0.00
R9228:Cadps2	UTSW	6	23,688,927 (GRCm39)	missense	probably benign	0.00
R9297:Cadps2	UTSW	6	23,496,887 (GRCm39)	missense	probably benign
R9318:Cadps2	UTSW	6	23,496,887 (GRCm39)	missense	probably benign
R9348:Cadps2	UTSW	6	23,344,262 (GRCm39)	missense	probably benign	0.20
R9447:Cadps2	UTSW	6	23,323,297 (GRCm39)	missense	probably damaging	0.96
R9484:Cadps2	UTSW	6	23,626,646 (GRCm39)	missense	probably benign	0.02
R9492:Cadps2	UTSW	6	23,427,238 (GRCm39)	missense	probably benign
R9630:Cadps2	UTSW	6	23,587,571 (GRCm39)	missense	probably benign	0.08
R9729:Cadps2	UTSW	6	23,382,982 (GRCm39)	missense	probably benign	0.28
Z1176:Cadps2	UTSW	6	23,321,800 (GRCm39)	missense	probably benign	0.24
Z1177:Cadps2	UTSW	6	23,838,817 (GRCm39)	missense	probably damaging	1.00
Z1177:Cadps2	UTSW	6	23,626,694 (GRCm39)	missense	probably damaging	1.00
Z1177:Cadps2	UTSW	6	23,385,477 (GRCm39)	missense	possibly damaging	0.88

Posted On

2014-01-21