Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01712:Mcoln3'

104849

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Mcoln3

Ensembl Gene

ENSMUSG00000036853

Gene Name

mucolipin 3

Synonyms

Va, varitint-waddler, TRPML3, 6720490O21Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.183) question?

Stock #

IGL01712

Quality Score

Status

Chromosome

Chromosomal Location

145823205-145847561 bp(+) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

T to C at 145834019 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000115655 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039450] [ENSMUST00000140214]

AlphaFold

Q8R4F0

Predicted Effect

probably benign
Transcript: ENSMUST00000039450

SMART Domains

Protein: ENSMUSP00000038801
Gene: ENSMUSG00000036853

Domain	Start	End	E-Value	Type
low complexity region	24	29	N/A	INTRINSIC
transmembrane domain	286	308	N/A	INTRINSIC
transmembrane domain	335	357	N/A	INTRINSIC
Pfam:PKD_channel	360	508	3.5e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000140214

SMART Domains

Protein: ENSMUSP00000115655
Gene: ENSMUSG00000036853

Domain	Start	End	E-Value	Type
low complexity region	24	29	N/A	INTRINSIC
transmembrane domain	63	82	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes one of members of the mucolipin cation channel proteins. Mutation studies of the highly similar protein in mice have shown that the protein is found in cochlea hair cells, and mutant mice show early-onset hearing loss and balance problems. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]
PHENOTYPE: Heterozygotes show normal/diluted/white hair patches, circling, hyperactivity, deafness, and reduced fertility. Homozygotes are white with small patches of color and show severe behavioral abnormalities, poor postnatal viability and are nearly infertile. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl2fm3	T	A	3: 59,776,321 (GRCm39)	I164N	possibly damaging	Het
Adgrb3	A	G	1: 25,865,360 (GRCm39)	V161A	probably benign	Het
Arhgdib	G	A	6: 136,901,195 (GRCm39)	T178M	probably damaging	Het
Atp11a	T	A	8: 12,901,138 (GRCm39)	I989K	probably benign	Het
Bcam	T	C	7: 19,492,692 (GRCm39)	S498G	probably damaging	Het
Bcas3	A	G	11: 85,471,874 (GRCm39)	I728V	probably damaging	Het
Cep57	G	T	9: 13,724,713 (GRCm39)	P119Q	possibly damaging	Het
Cimip2a	T	C	2: 25,108,804 (GRCm39)		probably benign	Het
Clip4	T	A	17: 72,106,036 (GRCm39)	I73N	probably damaging	Het
Cpa4	A	G	6: 30,590,815 (GRCm39)	D371G	possibly damaging	Het
Dnah7a	A	G	1: 53,462,429 (GRCm39)	S3721P	probably benign	Het
Fcrla	T	C	1: 170,749,192 (GRCm39)		probably null	Het
Foxg1	T	C	12: 49,432,403 (GRCm39)	S379P	possibly damaging	Het
Gatm	T	A	2: 122,431,306 (GRCm39)	Y227F	possibly damaging	Het
Grid2	A	T	6: 64,642,899 (GRCm39)	D887V	possibly damaging	Het
Gtpbp6	A	T	5: 110,252,245 (GRCm39)	I429N	probably benign	Het
Ighmbp2	A	G	19: 3,323,038 (GRCm39)		probably benign	Het
Irs4	T	C	X: 140,505,395 (GRCm39)	N934D	unknown	Het
Kif16b	T	A	2: 142,490,391 (GRCm39)	N1257I	probably damaging	Het
L1cam	T	C	X: 72,908,044 (GRCm39)	Y169C	probably damaging	Het
L3mbtl3	A	T	10: 26,152,133 (GRCm39)	M821K	probably damaging	Het
Lig3	A	G	11: 82,680,367 (GRCm39)		probably benign	Het
Lpin2	T	A	17: 71,522,063 (GRCm39)	D32E	probably damaging	Het
Mgst2	T	C	3: 51,571,992 (GRCm39)	V40A	probably damaging	Het
Mov10l1	T	C	15: 88,908,969 (GRCm39)	S997P	probably damaging	Het
Mycbpap	G	T	11: 94,403,481 (GRCm39)	H187Q	possibly damaging	Het
Onecut2	T	A	18: 64,519,673 (GRCm39)	S478T	probably damaging	Het
Or2n1d	A	T	17: 38,646,848 (GRCm39)	T267S	probably benign	Het
Or52h7	T	C	7: 104,214,226 (GRCm39)	V266A	probably benign	Het
Pcdhb5	A	T	18: 37,454,306 (GRCm39)	I229F	probably damaging	Het
Pfas	A	G	11: 68,881,886 (GRCm39)	V933A	probably benign	Het
Phldb2	A	T	16: 45,571,792 (GRCm39)	I1200N	probably damaging	Het
Pla2g4e	C	A	2: 120,019,884 (GRCm39)		probably null	Het
Prr36	G	A	8: 4,265,243 (GRCm39)	P169L	probably damaging	Het
Rhot2	A	G	17: 26,060,334 (GRCm39)		probably null	Het
Serpina3f	C	T	12: 104,184,657 (GRCm39)	P267L	probably damaging	Het
Sppl2a	C	T	2: 126,746,823 (GRCm39)		probably benign	Het
Tas2r122	A	T	6: 132,688,725 (GRCm39)	M56K	possibly damaging	Het
Tbxas1	A	G	6: 39,057,994 (GRCm39)	T450A	probably benign	Het
Tex16	T	C	X: 111,003,451 (GRCm39)	S87P	probably damaging	Het
Them7	T	A	2: 105,209,230 (GRCm39)	F183L	possibly damaging	Het
Tmbim7	A	G	5: 3,720,074 (GRCm39)	T116A	probably damaging	Het
Tomm40	G	T	7: 19,437,288 (GRCm39)	S224R	probably benign	Het
Top3a	A	T	11: 60,652,562 (GRCm39)	I84N	probably damaging	Het
Vmn1r28	A	G	6: 58,242,393 (GRCm39)	T79A	probably benign	Het
Vmn2r61	A	T	7: 41,909,661 (GRCm39)	Y62F	probably damaging	Het
Zbtb42	T	C	12: 112,646,718 (GRCm39)	C298R	probably benign	Het
Zfp395	G	A	14: 65,623,836 (GRCm39)	E102K	probably damaging	Het

Other mutations in Mcoln3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00508:Mcoln3	APN	3	145,839,683 (GRCm39)	missense	probably damaging	1.00
IGL01106:Mcoln3	APN	3	145,843,019 (GRCm39)	missense	probably benign	0.01
IGL02115:Mcoln3	APN	3	145,843,056 (GRCm39)	missense	probably damaging	0.99
IGL02116:Mcoln3	APN	3	145,839,664 (GRCm39)	missense	probably benign	0.29
P4717OSA:Mcoln3	UTSW	3	145,830,504 (GRCm39)	missense	probably damaging	0.99
R0463:Mcoln3	UTSW	3	145,846,331 (GRCm39)	nonsense	probably null
R1981:Mcoln3	UTSW	3	145,846,345 (GRCm39)	nonsense	probably null
R2056:Mcoln3	UTSW	3	145,833,979 (GRCm39)	missense	probably benign	0.01
R3000:Mcoln3	UTSW	3	145,839,662 (GRCm39)	missense	possibly damaging	0.62
R4366:Mcoln3	UTSW	3	145,846,247 (GRCm39)	missense	possibly damaging	0.76
R4667:Mcoln3	UTSW	3	145,836,959 (GRCm39)	missense	probably benign	0.01
R4950:Mcoln3	UTSW	3	145,845,274 (GRCm39)	missense	probably damaging	0.96
R5457:Mcoln3	UTSW	3	145,833,877 (GRCm39)	missense	probably benign	0.00
R6302:Mcoln3	UTSW	3	145,830,527 (GRCm39)	missense	probably benign	0.00
R6353:Mcoln3	UTSW	3	145,836,909 (GRCm39)	missense	probably damaging	0.99
R6632:Mcoln3	UTSW	3	145,833,942 (GRCm39)	missense	probably benign
R6915:Mcoln3	UTSW	3	145,843,011 (GRCm39)	critical splice acceptor site	probably null
R7790:Mcoln3	UTSW	3	145,845,247 (GRCm39)	missense	probably damaging	1.00
R7838:Mcoln3	UTSW	3	145,845,230 (GRCm39)	missense	probably damaging	1.00
R7861:Mcoln3	UTSW	3	145,830,546 (GRCm39)	missense	possibly damaging	0.95
R8348:Mcoln3	UTSW	3	145,836,974 (GRCm39)	missense	probably damaging	1.00
R8509:Mcoln3	UTSW	3	145,830,647 (GRCm39)	missense	probably benign	0.00
R8708:Mcoln3	UTSW	3	145,846,276 (GRCm39)	nonsense	probably null
R8838:Mcoln3	UTSW	3	145,845,126 (GRCm39)	missense	probably damaging	1.00
R8861:Mcoln3	UTSW	3	145,845,159 (GRCm39)	missense	probably damaging	1.00
R8981:Mcoln3	UTSW	3	145,827,554 (GRCm39)	missense	probably benign
Z1176:Mcoln3	UTSW	3	145,846,221 (GRCm39)	missense	probably benign	0.00

Posted On

2014-01-21