Incidental Mutation 'IGL00846:Fancc'
| ID |
10678 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Fancc
|
| Ensembl Gene |
ENSMUSG00000021461 |
| Gene Name |
Fanconi anemia, complementation group C |
| Synonyms |
Facc |
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.901)
|
| Stock # |
IGL00846
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
13 |
| Chromosomal Location |
63452519-63645126 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 63488270 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Serine
at position 237
(T237S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000124406
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000073029]
[ENSMUST00000099444]
[ENSMUST00000163091]
[ENSMUST00000161977]
[ENSMUST00000220684]
|
| AlphaFold |
P50652 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000073029
AA Change: T237S
PolyPhen 2
Score 0.707 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000072788
Gene: ENSMUSG00000021461
AA Change: T237S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
558 |
1.8e-305 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000099444
AA Change: T140S
PolyPhen 2
Score 0.860 (Sensitivity: 0.83; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000097043
Gene: ENSMUSG00000021461
AA Change: T140S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
461 |
5.8e-243 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160065
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160151
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160278
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160333
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000160735
AA Change: T95S
|
| SMART Domains |
Protein: ENSMUSP00000125710
Gene: ENSMUSG00000021461
AA Change: T95S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
91 |
5.1e-37 |
PFAM |
|
Pfam:Fanconi_C
|
86 |
117 |
5.6e-13 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000163091
AA Change: T237S
PolyPhen 2
Score 0.886 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000124406
Gene: ENSMUSG00000021461
AA Change: T237S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
517 |
4.8e-238 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000161977
AA Change: T237S
PolyPhen 2
Score 0.707 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000123817
Gene: ENSMUSG00000021461
AA Change: T237S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
558 |
1.8e-305 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000161656
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000220684
AA Change: T237S
PolyPhen 2
Score 0.686 (Sensitivity: 0.86; Specificity: 0.92)
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group C. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants are grossly normal, but chromosome aberrations and sensitivity to DNA crosslinkers are seen. Both sexes have fewer germ cell numbers and impaired fertility. Marrow progenitors show decrease in colony forming ability. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 35 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Atxn2l |
T |
C |
7: 126,098,350 (GRCm39) |
T181A |
probably damaging |
Het |
| Caskin1 |
T |
C |
17: 24,718,323 (GRCm39) |
|
probably null |
Het |
| Cass4 |
A |
C |
2: 172,271,643 (GRCm39) |
|
probably benign |
Het |
| Cdh26 |
A |
T |
2: 178,123,417 (GRCm39) |
Y672F |
possibly damaging |
Het |
| Cep290 |
T |
A |
10: 100,376,195 (GRCm39) |
|
probably benign |
Het |
| Cntnap2 |
T |
C |
6: 47,169,972 (GRCm39) |
L1146P |
probably benign |
Het |
| Cntnap5b |
T |
G |
1: 100,091,948 (GRCm39) |
C230G |
probably damaging |
Het |
| Ctnnd1 |
C |
T |
2: 84,452,354 (GRCm39) |
|
probably null |
Het |
| Cux1 |
A |
G |
5: 136,355,650 (GRCm39) |
I324T |
probably damaging |
Het |
| Dnajb4 |
T |
C |
3: 151,899,118 (GRCm39) |
N36S |
probably damaging |
Het |
| Fip1l1 |
A |
G |
5: 74,747,726 (GRCm39) |
|
probably benign |
Het |
| Hemgn |
G |
T |
4: 46,396,171 (GRCm39) |
T355K |
possibly damaging |
Het |
| Hivep1 |
T |
A |
13: 42,321,092 (GRCm39) |
L42* |
probably null |
Het |
| Hps3 |
A |
G |
3: 20,079,956 (GRCm39) |
W234R |
probably benign |
Het |
| Kit |
A |
T |
5: 75,801,471 (GRCm39) |
N586I |
probably damaging |
Het |
| Mettl14 |
T |
A |
3: 123,165,012 (GRCm39) |
K109N |
probably damaging |
Het |
| Mmab |
A |
T |
5: 114,571,378 (GRCm39) |
M166K |
probably benign |
Het |
| Naprt |
T |
A |
15: 75,763,637 (GRCm39) |
Y395F |
probably benign |
Het |
| Nostrin |
C |
T |
2: 69,015,899 (GRCm39) |
|
probably benign |
Het |
| Pgap1 |
G |
T |
1: 54,531,180 (GRCm39) |
|
probably benign |
Het |
| Plpp5 |
A |
T |
8: 26,210,585 (GRCm39) |
I59F |
probably damaging |
Het |
| Prrc2b |
T |
C |
2: 32,089,109 (GRCm39) |
|
probably benign |
Het |
| Scn4a |
A |
T |
11: 106,218,944 (GRCm39) |
V958D |
probably benign |
Het |
| Serpinb3b |
T |
A |
1: 107,083,579 (GRCm39) |
N200I |
probably damaging |
Het |
| Slc22a15 |
T |
A |
3: 101,768,136 (GRCm39) |
Q512L |
probably benign |
Het |
| Tmf1 |
A |
T |
6: 97,150,277 (GRCm39) |
Y477N |
possibly damaging |
Het |
| Trim10 |
T |
A |
17: 37,182,584 (GRCm39) |
L150H |
probably damaging |
Het |
| Ttc41 |
A |
G |
10: 86,572,797 (GRCm39) |
E723G |
possibly damaging |
Het |
| Usp25 |
A |
G |
16: 76,859,293 (GRCm39) |
S264G |
probably damaging |
Het |
| Vopp1 |
A |
G |
6: 57,731,465 (GRCm39) |
|
probably benign |
Het |
| Wapl |
G |
T |
14: 34,414,701 (GRCm39) |
|
probably benign |
Het |
| Wbp1 |
A |
G |
6: 83,097,022 (GRCm39) |
F93S |
probably damaging |
Het |
| Wt1 |
G |
T |
2: 104,997,302 (GRCm39) |
R413L |
probably damaging |
Het |
| Zfp345 |
C |
T |
2: 150,314,538 (GRCm39) |
G333D |
possibly damaging |
Het |
| Zmynd11 |
C |
A |
13: 9,770,808 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in Fancc |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00481:Fancc
|
APN |
13 |
63,548,059 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01404:Fancc
|
APN |
13 |
63,509,452 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02592:Fancc
|
APN |
13 |
63,508,011 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02625:Fancc
|
APN |
13 |
63,545,965 (GRCm39) |
missense |
probably damaging |
0.99 |
|
canneloni
|
UTSW |
13 |
63,479,637 (GRCm39) |
intron |
probably benign |
|
|
macaroni
|
UTSW |
13 |
63,469,679 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0362:Fancc
|
UTSW |
13 |
63,545,970 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R0554:Fancc
|
UTSW |
13 |
63,465,283 (GRCm39) |
missense |
probably benign |
0.32 |
|
R0626:Fancc
|
UTSW |
13 |
63,465,205 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0627:Fancc
|
UTSW |
13 |
63,465,292 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0726:Fancc
|
UTSW |
13 |
63,471,225 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0734:Fancc
|
UTSW |
13 |
63,479,656 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1363:Fancc
|
UTSW |
13 |
63,509,412 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1587:Fancc
|
UTSW |
13 |
63,488,246 (GRCm39) |
missense |
probably benign |
0.32 |
|
R1922:Fancc
|
UTSW |
13 |
63,478,381 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R4585:Fancc
|
UTSW |
13 |
63,495,378 (GRCm39) |
missense |
probably benign |
0.14 |
|
R4586:Fancc
|
UTSW |
13 |
63,495,378 (GRCm39) |
missense |
probably benign |
0.14 |
|
R4608:Fancc
|
UTSW |
13 |
63,479,637 (GRCm39) |
intron |
probably benign |
|
|
R5159:Fancc
|
UTSW |
13 |
63,469,679 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5401:Fancc
|
UTSW |
13 |
63,550,767 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5561:Fancc
|
UTSW |
13 |
63,465,201 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R5699:Fancc
|
UTSW |
13 |
63,478,446 (GRCm39) |
splice site |
probably null |
|
|
R6200:Fancc
|
UTSW |
13 |
63,508,062 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6448:Fancc
|
UTSW |
13 |
63,488,242 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7562:Fancc
|
UTSW |
13 |
63,550,867 (GRCm39) |
splice site |
probably null |
|
|
R7615:Fancc
|
UTSW |
13 |
63,465,372 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7805:Fancc
|
UTSW |
13 |
63,508,056 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R7864:Fancc
|
UTSW |
13 |
63,548,073 (GRCm39) |
nonsense |
probably null |
|
|
R8080:Fancc
|
UTSW |
13 |
63,550,837 (GRCm39) |
missense |
|
|
|
R8966:Fancc
|
UTSW |
13 |
63,495,285 (GRCm39) |
missense |
probably benign |
0.32 |
|
R8989:Fancc
|
UTSW |
13 |
63,548,090 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R9464:Fancc
|
UTSW |
13 |
63,550,769 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
| Posted On |
2012-12-06 |
Incidental Mutation