Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00753:Gdpd3'

12631

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Gdpd3

Ensembl Gene

ENSMUSG00000030703

Gene Name

glycerophosphodiester phosphodiesterase domain containing 3

Synonyms

1110015E22Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

IGL00753

Quality Score

Status

Chromosome

Chromosomal Location

126365586-126374817 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to A at 126366598 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 118 (Y118*)

Ref Sequence

ENSEMBL: ENSMUSP00000032944 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032944] [ENSMUST00000050201] [ENSMUST00000057669] [ENSMUST00000091328]

AlphaFold

Q99LY2

Predicted Effect

probably null
Transcript: ENSMUST00000032944
AA Change: Y118*

SMART Domains

Protein: ENSMUSP00000032944
Gene: ENSMUSG00000030703
AA Change: Y118*

Domain	Start	End	E-Value	Type
transmembrane domain	4	23	N/A	INTRINSIC
Pfam:GDPD	44	202	1.1e-23	PFAM
low complexity region	208	216	N/A	INTRINSIC
low complexity region	311	321	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000050201

SMART Domains

Protein: ENSMUSP00000101969
Gene: ENSMUSG00000063065

Domain	Start	End	E-Value	Type
low complexity region	2	32	N/A	INTRINSIC
S_TKc	43	331	3.3e-97	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000057669

SMART Domains

Protein: ENSMUSP00000051619
Gene: ENSMUSG00000063065

Domain	Start	End	E-Value	Type
low complexity region	2	32	N/A	INTRINSIC
S_TKc	43	331	3.3e-97	SMART
Blast:S_TKc	335	372	1e-15	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000091328

SMART Domains

Protein: ENSMUSP00000088880
Gene: ENSMUSG00000063065

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	1	213	2.5e-24	PFAM
Pfam:Pkinase	1	216	2.2e-58	PFAM
Pfam:APH	17	108	7.6e-7	PFAM
Blast:S_TKc	220	257	4e-16	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135649

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145965

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205468

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205660

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207004

Predicted Effect

probably benign
Transcript: ENSMUST00000205657

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205910

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206350

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206858

Predicted Effect

probably benign
Transcript: ENSMUST00000206272

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for an ENU-induced allele exhibit normal blood lymphocyte populations. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 20 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Atad5	C	A	11: 80,023,684 (GRCm39)	Q1596K	probably benign	Het
Bcl9l	C	A	9: 44,416,924 (GRCm39)	T254K	possibly damaging	Het
Cgas	G	A	9: 78,342,770 (GRCm39)	P344L	probably damaging	Het
Csmd3	A	G	15: 47,507,631 (GRCm39)	Y2961H	probably damaging	Het
Dop1b	A	G	16: 93,566,512 (GRCm39)	T980A	probably benign	Het
Ift140	T	A	17: 25,274,618 (GRCm39)	F763L	probably damaging	Het
Igfn1	G	T	1: 135,894,464 (GRCm39)	P2034H	probably damaging	Het
Msantd2	T	C	9: 37,434,845 (GRCm39)		probably benign	Het
Myo18a	T	C	11: 77,715,977 (GRCm39)	S864P	probably damaging	Het
Plbd1	A	C	6: 136,611,468 (GRCm39)	Y270D	probably benign	Het
Plcl1	T	C	1: 55,735,897 (GRCm39)	S413P	probably damaging	Het
Scn2a	A	G	2: 65,514,207 (GRCm39)	N297S	possibly damaging	Het
Tbc1d17	T	C	7: 44,492,509 (GRCm39)	T385A	probably benign	Het
Thsd7a	C	T	6: 12,327,528 (GRCm39)	C1448Y	probably damaging	Het
Tnpo3	T	A	6: 29,565,786 (GRCm39)	I523F	probably benign	Het
Vps13b	C	T	15: 35,372,177 (GRCm39)	S24L	probably damaging	Het
Wdr37	G	A	13: 8,911,210 (GRCm39)	R18C	probably damaging	Het
Zfyve16	T	A	13: 92,657,626 (GRCm39)	K762*	probably null	Het
Zmym2	T	A	14: 57,194,517 (GRCm39)	C1258*	probably null	Het
Zswim5	T	C	4: 116,842,933 (GRCm39)	W893R	possibly damaging	Het

Other mutations in Gdpd3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01113:Gdpd3	APN	7	126,366,997 (GRCm39)	missense	probably benign	0.01
IGL01433:Gdpd3	APN	7	126,370,356 (GRCm39)	missense	possibly damaging	0.82
IGL01465:Gdpd3	APN	7	126,367,829 (GRCm39)	missense	possibly damaging	0.63
IGL01736:Gdpd3	APN	7	126,365,695 (GRCm39)	missense	probably damaging	0.99
PIT4431001:Gdpd3	UTSW	7	126,365,647 (GRCm39)	missense	probably benign	0.05
R0118:Gdpd3	UTSW	7	126,370,165 (GRCm39)	missense	probably damaging	1.00
R0311:Gdpd3	UTSW	7	126,366,361 (GRCm39)	missense	possibly damaging	0.79
R2049:Gdpd3	UTSW	7	126,367,766 (GRCm39)	missense	probably damaging	0.99
R4976:Gdpd3	UTSW	7	126,366,454 (GRCm39)	missense	probably damaging	1.00
R6151:Gdpd3	UTSW	7	126,374,674 (GRCm39)	missense	probably benign	0.00
R6170:Gdpd3	UTSW	7	126,370,336 (GRCm39)	missense	probably benign	0.04
R6898:Gdpd3	UTSW	7	126,370,201 (GRCm39)	nonsense	probably null
R8236:Gdpd3	UTSW	7	126,367,838 (GRCm39)	missense	probably benign	0.26

Posted On

2012-12-06