Incidental Mutation 'IGL00777:Rufy2'
ID |
13885 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Rufy2
|
Ensembl Gene |
ENSMUSG00000020070 |
Gene Name |
RUN and FYVE domain-containing 2 |
Synonyms |
ZFYVE13, 2610111M19Rik, LZ-FYVE, Denn |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL00777
|
Quality Score |
|
Status
|
|
Chromosome |
10 |
Chromosomal Location |
62816002-62852989 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
G to A
at 62826833 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Cysteine to Tyrosine
at position 124
(C124Y)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000113429
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000062600]
[ENSMUST00000119567]
[ENSMUST00000122231]
[ENSMUST00000131718]
[ENSMUST00000143594]
[ENSMUST00000156302]
|
AlphaFold |
Q8R4C2 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000062600
AA Change: C124Y
PolyPhen 2
Score 0.112 (Sensitivity: 0.93; Specificity: 0.86)
|
SMART Domains |
Protein: ENSMUSP00000059982 Gene: ENSMUSG00000020070 AA Change: C124Y
Domain | Start | End | E-Value | Type |
RUN
|
105 |
167 |
3.02e-22 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000119567
AA Change: C124Y
PolyPhen 2
Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)
|
SMART Domains |
Protein: ENSMUSP00000113429 Gene: ENSMUSG00000020070 AA Change: C124Y
Domain | Start | End | E-Value | Type |
RUN
|
105 |
167 |
3.02e-22 |
SMART |
coiled coil region
|
210 |
268 |
N/A |
INTRINSIC |
coiled coil region
|
326 |
515 |
N/A |
INTRINSIC |
FYVE
|
532 |
599 |
6.99e-24 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000122231
|
SMART Domains |
Protein: ENSMUSP00000113754 Gene: ENSMUSG00000020070
Domain | Start | End | E-Value | Type |
Pfam:RUN
|
45 |
100 |
6.2e-9 |
PFAM |
low complexity region
|
110 |
123 |
N/A |
INTRINSIC |
coiled coil region
|
176 |
234 |
N/A |
INTRINSIC |
coiled coil region
|
292 |
372 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000131718
AA Change: C124Y
PolyPhen 2
Score 0.352 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000121419 Gene: ENSMUSG00000020070 AA Change: C124Y
Domain | Start | End | E-Value | Type |
RUN
|
105 |
167 |
3.02e-22 |
SMART |
coiled coil region
|
210 |
268 |
N/A |
INTRINSIC |
coiled coil region
|
326 |
406 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000143594
AA Change: C124Y
PolyPhen 2
Score 0.352 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000115339 Gene: ENSMUSG00000020070 AA Change: C124Y
Domain | Start | End | E-Value | Type |
RUN
|
105 |
167 |
3.02e-22 |
SMART |
coiled coil region
|
210 |
268 |
N/A |
INTRINSIC |
coiled coil region
|
326 |
406 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000148259
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000156302
|
SMART Domains |
Protein: ENSMUSP00000116938 Gene: ENSMUSG00000020070
Domain | Start | End | E-Value | Type |
PDB:2DWK|A
|
1 |
59 |
2e-31 |
PDB |
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 23 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adgra3 |
A |
G |
5: 50,183,100 (GRCm39) |
I82T |
probably damaging |
Het |
Cd72 |
T |
C |
4: 43,448,365 (GRCm39) |
Y305C |
possibly damaging |
Het |
Cldn34c1 |
T |
C |
X: 122,052,570 (GRCm39) |
L103P |
probably damaging |
Het |
Dhtkd1 |
A |
T |
2: 5,934,468 (GRCm39) |
L234H |
probably damaging |
Het |
H1f4 |
T |
A |
13: 23,806,005 (GRCm39) |
|
probably benign |
Het |
Hgd |
A |
G |
16: 37,433,611 (GRCm39) |
T77A |
probably damaging |
Het |
Itgad |
A |
T |
7: 127,803,022 (GRCm39) |
T1059S |
probably damaging |
Het |
Klhl20 |
T |
C |
1: 160,937,325 (GRCm39) |
T17A |
probably benign |
Het |
Lct |
T |
C |
1: 128,215,293 (GRCm39) |
D1761G |
probably benign |
Het |
Mmp23 |
T |
G |
4: 155,735,464 (GRCm39) |
Y334S |
possibly damaging |
Het |
Ncapg |
A |
G |
5: 45,853,107 (GRCm39) |
S858G |
possibly damaging |
Het |
Nsd1 |
G |
A |
13: 55,386,548 (GRCm39) |
G101E |
probably damaging |
Het |
Pdia3 |
T |
A |
2: 121,260,037 (GRCm39) |
L192Q |
probably damaging |
Het |
Phex |
A |
G |
X: 155,960,528 (GRCm39) |
L672P |
probably damaging |
Het |
Reln |
A |
G |
5: 22,223,848 (GRCm39) |
|
probably null |
Het |
Rfk |
T |
A |
19: 17,372,700 (GRCm39) |
V74E |
probably benign |
Het |
Rubcn |
A |
G |
16: 32,656,933 (GRCm39) |
C467R |
probably damaging |
Het |
Slc8a1 |
A |
G |
17: 81,956,009 (GRCm39) |
I343T |
probably damaging |
Het |
Smyd4 |
T |
A |
11: 75,281,634 (GRCm39) |
M369K |
probably benign |
Het |
Spata31e2 |
C |
A |
1: 26,721,173 (GRCm39) |
D1336Y |
probably damaging |
Het |
Tmem131l |
G |
T |
3: 83,806,597 (GRCm39) |
P1408T |
probably damaging |
Het |
Tmprss11f |
A |
G |
5: 86,671,924 (GRCm39) |
Y423H |
probably damaging |
Het |
Wdr70 |
A |
T |
15: 8,049,088 (GRCm39) |
M303K |
probably benign |
Het |
|
Other mutations in Rufy2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01516:Rufy2
|
APN |
10 |
62,847,212 (GRCm39) |
missense |
possibly damaging |
0.82 |
IGL02811:Rufy2
|
APN |
10 |
62,836,106 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03244:Rufy2
|
APN |
10 |
62,840,483 (GRCm39) |
missense |
probably benign |
0.08 |
PIT4434001:Rufy2
|
UTSW |
10 |
62,826,845 (GRCm39) |
missense |
possibly damaging |
0.60 |
R0071:Rufy2
|
UTSW |
10 |
62,824,946 (GRCm39) |
missense |
possibly damaging |
0.95 |
R0448:Rufy2
|
UTSW |
10 |
62,840,515 (GRCm39) |
missense |
probably benign |
|
R0496:Rufy2
|
UTSW |
10 |
62,828,949 (GRCm39) |
missense |
probably damaging |
1.00 |
R0723:Rufy2
|
UTSW |
10 |
62,833,873 (GRCm39) |
missense |
probably benign |
0.43 |
R0731:Rufy2
|
UTSW |
10 |
62,847,623 (GRCm39) |
critical splice donor site |
probably benign |
|
R1236:Rufy2
|
UTSW |
10 |
62,830,549 (GRCm39) |
missense |
probably benign |
0.36 |
R1414:Rufy2
|
UTSW |
10 |
62,837,978 (GRCm39) |
nonsense |
probably null |
|
R1600:Rufy2
|
UTSW |
10 |
62,842,450 (GRCm39) |
missense |
probably benign |
0.00 |
R1626:Rufy2
|
UTSW |
10 |
62,831,151 (GRCm39) |
missense |
probably benign |
0.43 |
R2035:Rufy2
|
UTSW |
10 |
62,842,526 (GRCm39) |
missense |
probably damaging |
0.99 |
R2141:Rufy2
|
UTSW |
10 |
62,826,773 (GRCm39) |
missense |
probably damaging |
1.00 |
R2962:Rufy2
|
UTSW |
10 |
62,836,039 (GRCm39) |
missense |
probably damaging |
0.96 |
R3874:Rufy2
|
UTSW |
10 |
62,833,916 (GRCm39) |
missense |
probably damaging |
1.00 |
R4206:Rufy2
|
UTSW |
10 |
62,840,551 (GRCm39) |
nonsense |
probably null |
|
R4321:Rufy2
|
UTSW |
10 |
62,818,459 (GRCm39) |
missense |
probably damaging |
1.00 |
R4878:Rufy2
|
UTSW |
10 |
62,837,990 (GRCm39) |
missense |
probably damaging |
1.00 |
R5636:Rufy2
|
UTSW |
10 |
62,833,733 (GRCm39) |
missense |
probably damaging |
1.00 |
R7382:Rufy2
|
UTSW |
10 |
62,833,748 (GRCm39) |
missense |
probably benign |
0.04 |
R7714:Rufy2
|
UTSW |
10 |
62,838,772 (GRCm39) |
missense |
probably benign |
0.01 |
R8278:Rufy2
|
UTSW |
10 |
62,843,472 (GRCm39) |
missense |
probably benign |
0.27 |
R8777:Rufy2
|
UTSW |
10 |
62,833,660 (GRCm39) |
missense |
possibly damaging |
0.86 |
R8777-TAIL:Rufy2
|
UTSW |
10 |
62,833,660 (GRCm39) |
missense |
possibly damaging |
0.86 |
R9181:Rufy2
|
UTSW |
10 |
62,836,166 (GRCm39) |
missense |
possibly damaging |
0.94 |
R9756:Rufy2
|
UTSW |
10 |
62,818,519 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2012-12-06 |