Incidental Mutation 'R1250:Slc9b1'
| ID |
151715 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Slc9b1
|
| Ensembl Gene |
ENSMUSG00000050150 |
| Gene Name |
solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 |
| Synonyms |
1700094G20Rik, 4933425K02Rik, 4933424B12Rik, Nhedc1 |
| MMRRC Submission |
039317-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.069)
|
| Stock # |
R1250 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
3 |
| Chromosomal Location |
135053790-135103588 bp(+) (GRCm39) |
| Type of Mutation |
start codon destroyed |
| DNA Base Change (assembly) |
T to C
at 135054531 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Threonine
at position 1
(M1T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000077644
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000051849]
[ENSMUST00000078568]
[ENSMUST00000159658]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000051849
|
| SMART Domains |
Protein: ENSMUSP00000060640
Gene: ENSMUSG00000037994
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
83 |
102 |
N/A |
INTRINSIC |
|
Pfam:Na_H_Exchanger
|
116 |
515 |
4.4e-32 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000078568
AA Change: M1T
|
| SMART Domains |
Protein: ENSMUSP00000077644
Gene: ENSMUSG00000050150
AA Change: M1T
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
32 |
105 |
N/A |
INTRINSIC |
|
low complexity region
|
123 |
136 |
N/A |
INTRINSIC |
|
Pfam:Na_H_Exchanger
|
148 |
542 |
4.7e-31 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000159658
|
| SMART Domains |
Protein: ENSMUSP00000124452
Gene: ENSMUSG00000050150
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
10 |
83 |
N/A |
INTRINSIC |
|
low complexity region
|
101 |
114 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160047
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160460
|
| SMART Domains |
Protein: ENSMUSP00000124902
Gene: ENSMUSG00000050150
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
32 |
105 |
N/A |
INTRINSIC |
|
low complexity region
|
123 |
136 |
N/A |
INTRINSIC |
|
Pfam:Na_H_Exchanger
|
149 |
363 |
1.8e-19 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160941
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000162767
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 96.5%
- 20x: 93.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a sodium/hydrogen exchanger and transmembrane protein. Highly conserved orthologs of this gene have been found in other mammalian species. The expression of this gene may be limited to testis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 19 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Aptx |
T |
A |
4: 40,693,447 (GRCm39) |
E162D |
probably benign |
Het |
| Cdhr4 |
A |
T |
9: 107,874,715 (GRCm39) |
Q20L |
probably damaging |
Het |
| Dlk1 |
A |
T |
12: 109,425,744 (GRCm39) |
T206S |
probably damaging |
Het |
| Gabrr2 |
T |
C |
4: 33,063,273 (GRCm39) |
L32P |
probably benign |
Het |
| Gjb3 |
G |
A |
4: 127,220,224 (GRCm39) |
R103W |
probably damaging |
Het |
| Kntc1 |
T |
A |
5: 123,922,262 (GRCm39) |
S954T |
possibly damaging |
Het |
| Krt28 |
A |
G |
11: 99,257,648 (GRCm39) |
|
probably null |
Het |
| Lingo3 |
T |
C |
10: 80,670,605 (GRCm39) |
T442A |
probably benign |
Het |
| Map3k5 |
G |
A |
10: 19,986,521 (GRCm39) |
A912T |
possibly damaging |
Het |
| Msantd3 |
C |
A |
4: 48,552,789 (GRCm39) |
P126Q |
probably damaging |
Het |
| Nek10 |
T |
C |
14: 14,853,887 (GRCm38) |
S358P |
probably damaging |
Het |
| Prl2c2 |
G |
C |
13: 13,176,786 (GRCm39) |
T47R |
probably damaging |
Het |
| Prss59 |
A |
T |
6: 40,902,909 (GRCm39) |
|
probably null |
Het |
| Qtrt1 |
C |
T |
9: 21,330,844 (GRCm39) |
T324M |
probably benign |
Het |
| Rag2 |
A |
G |
2: 101,460,784 (GRCm39) |
S365G |
probably damaging |
Het |
| Slc6a2 |
C |
A |
8: 93,719,491 (GRCm39) |
T402K |
probably benign |
Het |
| Ttn |
A |
G |
2: 76,720,904 (GRCm39) |
|
probably benign |
Het |
| Vmn1r31 |
A |
G |
6: 58,449,643 (GRCm39) |
V74A |
probably benign |
Het |
| Zkscan3 |
A |
G |
13: 21,572,694 (GRCm39) |
F313L |
probably benign |
Het |
|
| Other mutations in Slc9b1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01979:Slc9b1
|
APN |
3 |
135,077,743 (GRCm39) |
splice site |
probably null |
|
|
IGL02793:Slc9b1
|
APN |
3 |
135,080,167 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02875:Slc9b1
|
APN |
3 |
135,080,167 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02977:Slc9b1
|
APN |
3 |
135,103,484 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02990:Slc9b1
|
APN |
3 |
135,100,744 (GRCm39) |
splice site |
probably null |
|
|
IGL03112:Slc9b1
|
APN |
3 |
135,103,433 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03277:Slc9b1
|
APN |
3 |
135,096,269 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
IGL03409:Slc9b1
|
APN |
3 |
135,100,670 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0190:Slc9b1
|
UTSW |
3 |
135,063,434 (GRCm39) |
missense |
unknown |
|
|
R0329:Slc9b1
|
UTSW |
3 |
135,078,996 (GRCm39) |
nonsense |
probably null |
|
|
R0591:Slc9b1
|
UTSW |
3 |
135,088,593 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R0592:Slc9b1
|
UTSW |
3 |
135,099,835 (GRCm39) |
splice site |
probably benign |
|
|
R0602:Slc9b1
|
UTSW |
3 |
135,103,516 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0893:Slc9b1
|
UTSW |
3 |
135,100,651 (GRCm39) |
missense |
probably benign |
0.15 |
|
R1619:Slc9b1
|
UTSW |
3 |
135,060,765 (GRCm39) |
splice site |
probably null |
|
|
R1840:Slc9b1
|
UTSW |
3 |
135,063,229 (GRCm39) |
missense |
unknown |
|
|
R3157:Slc9b1
|
UTSW |
3 |
135,077,606 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3159:Slc9b1
|
UTSW |
3 |
135,077,606 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4565:Slc9b1
|
UTSW |
3 |
135,088,478 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5138:Slc9b1
|
UTSW |
3 |
135,063,534 (GRCm39) |
intron |
probably benign |
|
|
R5154:Slc9b1
|
UTSW |
3 |
135,078,940 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5429:Slc9b1
|
UTSW |
3 |
135,079,024 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5677:Slc9b1
|
UTSW |
3 |
135,063,320 (GRCm39) |
missense |
unknown |
|
|
R5903:Slc9b1
|
UTSW |
3 |
135,098,655 (GRCm39) |
intron |
probably benign |
|
|
R5933:Slc9b1
|
UTSW |
3 |
135,099,756 (GRCm39) |
missense |
probably benign |
0.30 |
|
R6593:Slc9b1
|
UTSW |
3 |
135,063,219 (GRCm39) |
start codon destroyed |
probably null |
|
|
R6667:Slc9b1
|
UTSW |
3 |
135,077,726 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6788:Slc9b1
|
UTSW |
3 |
135,063,518 (GRCm39) |
splice site |
probably null |
|
|
R7974:Slc9b1
|
UTSW |
3 |
135,099,791 (GRCm39) |
missense |
possibly damaging |
0.57 |
|
R8210:Slc9b1
|
UTSW |
3 |
135,097,948 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8276:Slc9b1
|
UTSW |
3 |
135,077,658 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R8988:Slc9b1
|
UTSW |
3 |
135,078,900 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R9102:Slc9b1
|
UTSW |
3 |
135,100,725 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9266:Slc9b1
|
UTSW |
3 |
135,054,468 (GRCm39) |
intron |
probably benign |
|
|
RF006:Slc9b1
|
UTSW |
3 |
135,063,303 (GRCm39) |
small deletion |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- TTATCGCAGCGGACAAGCACTC -3'
(R):5'- TGCACAATGACAGGTGGCCTTC -3'
Sequencing Primer
(F):5'- GGACAAGCACTCAACACCAATG -3'
(R):5'- TCATGTCACCAGGCTCTGTT -3'
|
| Posted On |
2014-01-29 |
Incidental Mutation