Mutagenetix > Incidental Mutation

Incidental Mutation 'R0030:Ptchd4'

15256

Institutional Source

Beutler Lab

Gene Symbol

Ptchd4

Ensembl Gene

ENSMUSG00000042256

Gene Name

patched domain containing 4

Synonyms

3110082D06Rik

MMRRC Submission

038324-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.111) question?

Stock #

R0030 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

42626838-42815968 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 42627999 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Stop codon at position 153 (C153*)

Ref Sequence

ENSEMBL: ENSMUSP00000047640 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048691]

AlphaFold

B9EKX1

Predicted Effect

probably null
Transcript: ENSMUST00000048691
AA Change: C153*

SMART Domains

Protein: ENSMUSP00000047640
Gene: ENSMUSG00000042256
AA Change: C153*

Domain	Start	End	E-Value	Type
Pfam:Patched	58	867	6.1e-102	PFAM
Pfam:Sterol-sensing	312	464	2.9e-26	PFAM
low complexity region	869	891	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 78.5%
3x: 68.6%
10x: 42.5%
20x: 22.6%

Validation Efficiency

97% (72/74)

Allele List at MGI

All alleles(2) : Targeted(2)

Other mutations in this stock

Total: 30 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aebp2	A	C	6: 140,583,473 (GRCm39)	S316R	probably damaging	Het
Brwd1	A	G	16: 95,822,456 (GRCm39)	S1250P	probably damaging	Het
Cacna1s	T	C	1: 136,022,727 (GRCm39)		probably null	Het
Cass4	G	T	2: 172,269,762 (GRCm39)	E617*	probably null	Het
Cct4	T	C	11: 22,951,357 (GRCm39)		probably benign	Het
Cdh20	C	T	1: 110,065,798 (GRCm39)	Q691*	probably null	Het
Crip1	G	A	12: 113,116,996 (GRCm39)		probably null	Het
Dnah5	A	T	15: 28,451,663 (GRCm39)	D4367V	probably benign	Het
Dock3	A	G	9: 106,789,512 (GRCm39)	V1514A	possibly damaging	Het
Eps15l1	A	G	8: 73,126,894 (GRCm39)	S646P	probably benign	Het
Faap24	A	T	7: 35,092,285 (GRCm39)	F211I	probably damaging	Het
Flrt3	A	T	2: 140,502,237 (GRCm39)	Y464N	probably damaging	Het
Foxi2	A	G	7: 135,013,345 (GRCm39)	T192A	probably damaging	Het
Gm7298	T	A	6: 121,751,009 (GRCm39)	F695L	probably benign	Het
Ifnk	T	G	4: 35,152,489 (GRCm39)	V139G	probably benign	Het
Kif18a	A	T	2: 109,163,663 (GRCm39)	I671L	probably benign	Het
Lcn10	T	C	2: 25,575,093 (GRCm39)	F154L	probably damaging	Het
Med12l	T	G	3: 59,156,076 (GRCm39)	L1198R	probably damaging	Het
Mmp23	G	A	4: 155,735,768 (GRCm39)	R268*	probably null	Het
Mrps30	T	C	13: 118,519,531 (GRCm39)	D298G	possibly damaging	Het
Myh7	T	A	14: 55,229,427 (GRCm39)	T124S	probably benign	Het
Odf4	T	A	11: 68,817,767 (GRCm39)	E9D	probably benign	Het
Scp2	T	A	4: 107,964,887 (GRCm39)		probably null	Het
Slc16a10	A	G	10: 39,952,819 (GRCm39)	V225A	probably benign	Het
Slc66a1	A	G	4: 139,033,764 (GRCm39)	S52P	probably damaging	Het
Tbk1	A	G	10: 121,397,529 (GRCm39)	V381A	probably benign	Het
Tdrd6	T	C	17: 43,937,482 (GRCm39)	K1189E	possibly damaging	Het
Ttc39a	C	A	4: 109,280,170 (GRCm39)	H151N	probably benign	Het
Ush2a	C	T	1: 188,554,854 (GRCm39)	T3544M	possibly damaging	Het
Vnn1	A	G	10: 23,776,744 (GRCm39)	H365R	probably benign	Het

Other mutations in Ptchd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00539:Ptchd4	APN	17	42,627,817 (GRCm39)	nonsense	probably null
IGL01360:Ptchd4	APN	17	42,627,936 (GRCm39)	missense	probably benign	0.09
IGL01814:Ptchd4	APN	17	42,814,177 (GRCm39)	missense	possibly damaging	0.84
IGL01885:Ptchd4	APN	17	42,814,493 (GRCm39)	missense	probably damaging	1.00
IGL01929:Ptchd4	APN	17	42,814,213 (GRCm39)	missense	probably benign	0.02
IGL02371:Ptchd4	APN	17	42,627,865 (GRCm39)	missense	possibly damaging	0.83
IGL02480:Ptchd4	APN	17	42,813,431 (GRCm39)	missense	probably benign	0.38
IGL02507:Ptchd4	APN	17	42,627,764 (GRCm39)	missense	possibly damaging	0.72
IGL02593:Ptchd4	APN	17	42,628,037 (GRCm39)	missense	probably benign	0.24
IGL02861:Ptchd4	APN	17	42,688,208 (GRCm39)	missense	probably damaging	1.00
IGL02884:Ptchd4	APN	17	42,813,340 (GRCm39)	missense	possibly damaging	0.86
IGL03384:Ptchd4	APN	17	42,813,481 (GRCm39)	missense	probably damaging	1.00
PIT4418001:Ptchd4	UTSW	17	42,813,980 (GRCm39)	missense	probably damaging	1.00
R0243:Ptchd4	UTSW	17	42,814,307 (GRCm39)	missense	probably damaging	1.00
R0398:Ptchd4	UTSW	17	42,688,150 (GRCm39)	missense	possibly damaging	0.95
R0513:Ptchd4	UTSW	17	42,814,637 (GRCm39)	missense	probably benign	0.14
R0630:Ptchd4	UTSW	17	42,688,076 (GRCm39)	missense	probably benign	0.17
R0662:Ptchd4	UTSW	17	42,813,467 (GRCm39)	missense	probably damaging	1.00
R1004:Ptchd4	UTSW	17	42,688,493 (GRCm39)	missense	probably benign	0.00
R1433:Ptchd4	UTSW	17	42,814,606 (GRCm39)	missense	possibly damaging	0.75
R1451:Ptchd4	UTSW	17	42,813,809 (GRCm39)	missense	probably damaging	0.99
R1522:Ptchd4	UTSW	17	42,814,433 (GRCm39)	missense	probably damaging	1.00
R1901:Ptchd4	UTSW	17	42,814,507 (GRCm39)	missense	probably benign	0.10
R1902:Ptchd4	UTSW	17	42,814,507 (GRCm39)	missense	probably benign	0.10
R2135:Ptchd4	UTSW	17	42,627,965 (GRCm39)	missense	probably benign	0.01
R3935:Ptchd4	UTSW	17	42,814,380 (GRCm39)	missense	possibly damaging	0.80
R4184:Ptchd4	UTSW	17	42,813,650 (GRCm39)	missense	probably damaging	0.99
R4552:Ptchd4	UTSW	17	42,813,346 (GRCm39)	missense	probably benign	0.00
R4573:Ptchd4	UTSW	17	42,813,668 (GRCm39)	missense	probably benign	0.26
R5100:Ptchd4	UTSW	17	42,814,567 (GRCm39)	missense	possibly damaging	0.59
R5640:Ptchd4	UTSW	17	42,814,026 (GRCm39)	missense	possibly damaging	0.73
R6213:Ptchd4	UTSW	17	42,688,251 (GRCm39)	missense	probably benign	0.00
R6704:Ptchd4	UTSW	17	42,627,931 (GRCm39)	missense	probably benign	0.00
R7011:Ptchd4	UTSW	17	42,814,759 (GRCm39)	missense	probably benign	0.19
R7017:Ptchd4	UTSW	17	42,813,626 (GRCm39)	missense	probably damaging	1.00
R7185:Ptchd4	UTSW	17	42,814,079 (GRCm39)	missense	probably damaging	1.00
R8112:Ptchd4	UTSW	17	42,814,066 (GRCm39)	missense	probably benign	0.25
R8153:Ptchd4	UTSW	17	42,814,787 (GRCm39)	missense	probably benign	0.31
R8220:Ptchd4	UTSW	17	42,813,554 (GRCm39)	missense	probably benign	0.00
R8547:Ptchd4	UTSW	17	42,813,512 (GRCm39)	missense	probably benign	0.01
R9072:Ptchd4	UTSW	17	42,813,650 (GRCm39)	missense	probably damaging	0.99
R9073:Ptchd4	UTSW	17	42,813,650 (GRCm39)	missense	probably damaging	0.99
R9205:Ptchd4	UTSW	17	42,814,276 (GRCm39)	missense	probably benign	0.00
R9242:Ptchd4	UTSW	17	42,627,604 (GRCm39)	nonsense	probably null
R9687:Ptchd4	UTSW	17	42,813,467 (GRCm39)	missense	probably damaging	1.00
R9706:Ptchd4	UTSW	17	42,814,806 (GRCm39)	makesense	probably null
R9718:Ptchd4	UTSW	17	42,813,641 (GRCm39)	missense	probably damaging	0.99
X0062:Ptchd4	UTSW	17	42,688,355 (GRCm39)	missense	probably damaging	0.98

Posted On

2012-12-17