Incidental Mutation 'IGL01783:St6gal1'
ID |
154197 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
St6gal1
|
Ensembl Gene |
ENSMUSG00000022885 |
Gene Name |
beta galactoside alpha 2,6 sialyltransferase 1 |
Synonyms |
Siat1, ST6Gal I, St6Gal-I |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.084)
|
Stock # |
IGL01783
|
Quality Score |
|
Status
|
|
Chromosome |
16 |
Chromosomal Location |
23043490-23179100 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 23140305 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Alanine
at position 159
(T159A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000136206
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000023601]
[ENSMUST00000115335]
[ENSMUST00000128050]
[ENSMUST00000178797]
|
AlphaFold |
Q64685 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000023601
AA Change: T159A
PolyPhen 2
Score 0.293 (Sensitivity: 0.91; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000023601 Gene: ENSMUSG00000022885 AA Change: T159A
Domain | Start | End | E-Value | Type |
transmembrane domain
|
9 |
26 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_29
|
127 |
389 |
2.3e-63 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000115335
AA Change: T159A
PolyPhen 2
Score 0.293 (Sensitivity: 0.91; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000110992 Gene: ENSMUSG00000022885 AA Change: T159A
Domain | Start | End | E-Value | Type |
transmembrane domain
|
9 |
26 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_29
|
140 |
383 |
8.3e-36 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000128050
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152449
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000178797
AA Change: T159A
PolyPhen 2
Score 0.293 (Sensitivity: 0.91; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000136206 Gene: ENSMUSG00000022885 AA Change: T159A
Domain | Start | End | E-Value | Type |
transmembrane domain
|
9 |
26 |
N/A |
INTRINSIC |
Pfam:Glyco_transf_29
|
127 |
389 |
2.3e-63 |
PFAM |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: This gene encodes a member of glycosyltransferase family 29. The encoded protein is a type II membrane protein that catalyzes the transfer of sialic acid from CMP-sialic acid to galactose-containing substrates. The protein, which is normally found in the Golgi but can be proteolytically processed to a soluble form, is involved in the generation of the cell-surface carbohydrate determinants and differentiation antigens HB-6, CD75, and CD76. This gene has been incorrectly referred to as CD75. Alternatively spliced transcript variants have been observed for this gene, and a pseudogene of this gene is located on chromosome 15. [provided by RefSeq, Nov 2011] PHENOTYPE: Homozygous mutation of this gene results in altered terminal glycosylation. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 46 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abhd13 |
T |
C |
8: 10,037,900 (GRCm39) |
Y166H |
possibly damaging |
Het |
Abi3bp |
G |
A |
16: 56,353,332 (GRCm39) |
|
probably null |
Het |
Actrt3 |
T |
C |
3: 30,652,624 (GRCm39) |
T157A |
probably benign |
Het |
Adam26b |
T |
C |
8: 43,974,798 (GRCm39) |
K68R |
probably benign |
Het |
Adgrg7 |
A |
G |
16: 56,568,282 (GRCm39) |
|
probably null |
Het |
Ano6 |
T |
C |
15: 95,860,143 (GRCm39) |
I755T |
possibly damaging |
Het |
Basp1 |
T |
C |
15: 25,364,953 (GRCm39) |
N15D |
unknown |
Het |
Bod1l |
T |
C |
5: 41,966,055 (GRCm39) |
N2670S |
probably benign |
Het |
Btbd3 |
T |
A |
2: 138,125,656 (GRCm39) |
I280N |
probably damaging |
Het |
Cdh16 |
T |
A |
8: 105,344,488 (GRCm39) |
Y17F |
probably damaging |
Het |
Clmp |
G |
T |
9: 40,693,703 (GRCm39) |
G307W |
possibly damaging |
Het |
Clrn2 |
C |
A |
5: 45,617,503 (GRCm39) |
Q125K |
probably benign |
Het |
Ctnna3 |
C |
T |
10: 63,656,248 (GRCm39) |
A276V |
possibly damaging |
Het |
Dram2 |
A |
T |
3: 106,480,972 (GRCm39) |
T172S |
possibly damaging |
Het |
Dync2h1 |
G |
A |
9: 7,118,822 (GRCm39) |
|
probably benign |
Het |
Ezr |
T |
C |
17: 7,009,888 (GRCm39) |
|
probably benign |
Het |
Gbe1 |
T |
A |
16: 70,275,257 (GRCm39) |
D352E |
probably damaging |
Het |
Gbe1 |
T |
C |
16: 70,198,743 (GRCm39) |
|
probably null |
Het |
Gpr18 |
T |
A |
14: 122,149,789 (GRCm39) |
M79L |
probably benign |
Het |
Gss |
T |
C |
2: 155,413,479 (GRCm39) |
Y196C |
probably damaging |
Het |
Gtpbp1 |
T |
C |
15: 79,600,398 (GRCm39) |
S444P |
probably damaging |
Het |
Hecw1 |
C |
T |
13: 14,452,878 (GRCm39) |
R712K |
probably damaging |
Het |
Helz2 |
T |
G |
2: 180,874,674 (GRCm39) |
D1940A |
probably damaging |
Het |
Hmcn1 |
A |
T |
1: 150,491,051 (GRCm39) |
V4166E |
possibly damaging |
Het |
Klkb1 |
T |
C |
8: 45,729,428 (GRCm39) |
Y297C |
probably damaging |
Het |
Krt75 |
T |
A |
15: 101,473,364 (GRCm39) |
I537F |
probably benign |
Het |
Lrp1b |
T |
A |
2: 41,202,584 (GRCm39) |
T1176S |
probably damaging |
Het |
Nid2 |
T |
C |
14: 19,818,745 (GRCm39) |
L413P |
probably benign |
Het |
Or10ag57 |
T |
A |
2: 87,218,187 (GRCm39) |
M46K |
possibly damaging |
Het |
Or10ag57 |
G |
T |
2: 87,218,182 (GRCm39) |
L44F |
probably benign |
Het |
Or4c11 |
T |
C |
2: 88,695,186 (GRCm39) |
L79P |
probably damaging |
Het |
Or5t7 |
A |
G |
2: 86,507,425 (GRCm39) |
V84A |
probably benign |
Het |
Piwil1 |
A |
G |
5: 128,820,890 (GRCm39) |
N272D |
probably benign |
Het |
Ppfia3 |
T |
C |
7: 45,009,481 (GRCm39) |
|
probably null |
Het |
Prkg1 |
A |
G |
19: 30,602,089 (GRCm39) |
V389A |
probably damaging |
Het |
Sema3a |
C |
A |
5: 13,611,767 (GRCm39) |
S344R |
probably damaging |
Het |
Serpina3j |
T |
C |
12: 104,284,750 (GRCm39) |
L309P |
probably damaging |
Het |
Slc15a1 |
A |
G |
14: 121,708,688 (GRCm39) |
|
probably null |
Het |
Sp8 |
G |
T |
12: 118,812,759 (GRCm39) |
A205S |
probably benign |
Het |
Speer4a1 |
T |
A |
5: 26,240,045 (GRCm39) |
Q235L |
possibly damaging |
Het |
Tbrg1 |
G |
T |
9: 37,565,596 (GRCm39) |
P119T |
possibly damaging |
Het |
Tmem59l |
T |
C |
8: 70,939,874 (GRCm39) |
T32A |
probably damaging |
Het |
Trmt13 |
G |
A |
3: 116,376,561 (GRCm39) |
R277* |
probably null |
Het |
Zfp316 |
A |
G |
5: 143,248,631 (GRCm39) |
F205S |
unknown |
Het |
Zfp418 |
G |
T |
7: 7,184,448 (GRCm39) |
W137L |
possibly damaging |
Het |
Zp3r |
A |
T |
1: 130,526,603 (GRCm39) |
V200D |
possibly damaging |
Het |
|
Other mutations in St6gal1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00426:St6gal1
|
APN |
16 |
23,175,142 (GRCm39) |
splice site |
probably benign |
|
IGL01667:St6gal1
|
APN |
16 |
23,140,174 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02996:St6gal1
|
APN |
16 |
23,139,904 (GRCm39) |
missense |
probably damaging |
0.98 |
R0049:St6gal1
|
UTSW |
16 |
23,139,891 (GRCm39) |
missense |
probably damaging |
1.00 |
R0049:St6gal1
|
UTSW |
16 |
23,139,891 (GRCm39) |
missense |
probably damaging |
1.00 |
R0295:St6gal1
|
UTSW |
16 |
23,174,953 (GRCm39) |
splice site |
probably benign |
|
R1290:St6gal1
|
UTSW |
16 |
23,140,411 (GRCm39) |
missense |
probably benign |
0.03 |
R1352:St6gal1
|
UTSW |
16 |
23,140,401 (GRCm39) |
missense |
probably damaging |
1.00 |
R1817:St6gal1
|
UTSW |
16 |
23,140,083 (GRCm39) |
nonsense |
probably null |
|
R1911:St6gal1
|
UTSW |
16 |
23,140,383 (GRCm39) |
missense |
probably damaging |
0.99 |
R2113:St6gal1
|
UTSW |
16 |
23,147,167 (GRCm39) |
missense |
probably damaging |
0.98 |
R4591:St6gal1
|
UTSW |
16 |
23,140,044 (GRCm39) |
missense |
probably benign |
0.00 |
R5761:St6gal1
|
UTSW |
16 |
23,139,805 (GRCm39) |
utr 5 prime |
probably benign |
|
R6554:St6gal1
|
UTSW |
16 |
23,140,405 (GRCm39) |
missense |
probably benign |
0.00 |
R6925:St6gal1
|
UTSW |
16 |
23,174,963 (GRCm39) |
missense |
probably damaging |
1.00 |
R7658:St6gal1
|
UTSW |
16 |
23,174,978 (GRCm39) |
missense |
probably damaging |
1.00 |
R7740:St6gal1
|
UTSW |
16 |
23,139,785 (GRCm39) |
splice site |
probably benign |
|
R7967:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R7970:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R7973:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R8017:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R8017:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R8018:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R8019:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R8044:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R8122:St6gal1
|
UTSW |
16 |
23,173,644 (GRCm39) |
missense |
probably benign |
0.00 |
R8123:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R8124:St6gal1
|
UTSW |
16 |
23,176,585 (GRCm39) |
missense |
probably benign |
0.01 |
R9265:St6gal1
|
UTSW |
16 |
23,140,168 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2014-02-04 |