Incidental Mutation 'IGL01814:Slc9a3'
ID154335
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Slc9a3
Ensembl Gene ENSMUSG00000036123
Gene Namesolute carrier family 9 (sodium/hydrogen exchanger), member 3
Synonyms9030624O13Rik, NHE-3, NHE3
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #IGL01814
Quality Score
Status
Chromosome13
Chromosomal Location74121457-74169442 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) C to A at 74165972 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Serine at position 800 (R800S)
Ref Sequence ENSEMBL: ENSMUSP00000152682 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000035934] [ENSMUST00000036208] [ENSMUST00000221703] [ENSMUST00000225423]
Predicted Effect probably benign
Transcript: ENSMUST00000035934
SMART Domains Protein: ENSMUSP00000039416
Gene: ENSMUSG00000034152

DomainStartEndE-ValueType
Pfam:Sec6 187 743 1.7e-162 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000036208
AA Change: R800S

PolyPhen 2 Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000038142
Gene: ENSMUSG00000036123
AA Change: R800S

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
Pfam:Na_H_Exchanger 53 457 3.6e-87 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000221703
AA Change: R800S

PolyPhen 2 Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)
Predicted Effect probably benign
Transcript: ENSMUST00000225423
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an epithelial brush border Na/H exchanger that uses an inward sodium ion gradient to expel acids from the cell. Defects in this gene are a cause of congenital secretory sodium diarrhea. Pseudogenes of this gene exist on chromosomes 10 and 22. [provided by RefSeq, Mar 2016]
PHENOTYPE: Homozygous mutant mice have diarrhea associated with defects of renal and intestinal absorption. Males are infertile. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Afg3l2 T A 18: 67,405,474 N738I probably benign Het
B3galnt2 A G 13: 13,987,353 S1G probably damaging Het
Btbd9 T C 17: 30,299,535 I484V probably benign Het
Chd6 T C 2: 161,059,929 K8R probably benign Het
Csmd1 A C 8: 16,501,375 L279R probably damaging Het
Dmxl1 G T 18: 49,864,868 V708F probably damaging Het
Dnajc24 C T 2: 105,981,084 G49R probably benign Het
Dnhd1 T C 7: 105,652,030 M198T probably benign Het
Dtx3l T A 16: 35,931,502 D683V probably benign Het
Duox1 A G 2: 122,346,272 T1425A probably damaging Het
Enpp3 G A 10: 24,792,025 P510S possibly damaging Het
Iars2 G T 1: 185,302,775 Y590* probably null Het
Itgb7 T C 15: 102,223,417 R244G possibly damaging Het
Itpr2 T A 6: 146,232,546 R1820S probably benign Het
Matn3 T C 12: 8,952,091 V101A probably damaging Het
Neurod1 C T 2: 79,454,659 V127M probably damaging Het
Olfr1505 T A 19: 13,919,528 C169* probably null Het
Olfr683 T C 7: 105,143,604 I236V possibly damaging Het
Pde10a A G 17: 8,929,107 M1V probably null Het
Pdk4 A G 6: 5,491,828 probably null Het
Ptchd4 A T 17: 42,503,286 I693F possibly damaging Het
Scml4 C T 10: 42,935,045 R194C probably damaging Het
Slc24a4 T C 12: 102,254,618 V436A probably benign Het
Smchd1 C A 17: 71,378,187 M1415I probably benign Het
Syndig1 T A 2: 149,899,770 I92N probably damaging Het
Tchhl1 T C 3: 93,470,349 V120A possibly damaging Het
Thumpd3 C T 6: 113,063,151 T332I possibly damaging Het
Tmem101 G A 11: 102,153,458 T201M possibly damaging Het
Trip11 T C 12: 101,884,488 T1106A probably damaging Het
Ttc41 C T 10: 86,731,026 R519C probably damaging Het
Xirp1 T A 9: 120,017,919 M633L probably damaging Het
Zfp938 A T 10: 82,226,218 D189E probably benign Het
Other mutations in Slc9a3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00835:Slc9a3 APN 13 74160302 missense probably benign 0.19
IGL01299:Slc9a3 APN 13 74160263 missense probably benign 0.33
IGL01390:Slc9a3 APN 13 74150761 missense probably benign 0.01
IGL02020:Slc9a3 APN 13 74158848 missense probably damaging 0.99
IGL02072:Slc9a3 APN 13 74165859 missense probably benign 0.00
IGL02186:Slc9a3 APN 13 74163114 missense possibly damaging 0.94
IGL02878:Slc9a3 APN 13 74165357 nonsense probably null
IGL03056:Slc9a3 APN 13 74150819 missense probably damaging 1.00
R0090:Slc9a3 UTSW 13 74158728 missense probably damaging 0.99
R0280:Slc9a3 UTSW 13 74159424 missense probably damaging 1.00
R0359:Slc9a3 UTSW 13 74157607 missense probably damaging 1.00
R0388:Slc9a3 UTSW 13 74121536 missense unknown
R0396:Slc9a3 UTSW 13 74157784 critical splice donor site probably null
R0893:Slc9a3 UTSW 13 74159246 missense probably damaging 1.00
R1169:Slc9a3 UTSW 13 74150743 missense probably damaging 0.98
R1640:Slc9a3 UTSW 13 74158818 missense probably damaging 1.00
R1769:Slc9a3 UTSW 13 74163071 missense probably benign 0.00
R1850:Slc9a3 UTSW 13 74161770 missense probably benign 0.34
R1937:Slc9a3 UTSW 13 74166056 unclassified probably null
R2048:Slc9a3 UTSW 13 74163741 missense probably damaging 1.00
R2146:Slc9a3 UTSW 13 74121603 missense probably benign 0.00
R2495:Slc9a3 UTSW 13 74158703 missense probably damaging 0.99
R2883:Slc9a3 UTSW 13 74158760 missense probably damaging 1.00
R2938:Slc9a3 UTSW 13 74121669 missense possibly damaging 0.62
R4538:Slc9a3 UTSW 13 74161732 missense possibly damaging 0.56
R4580:Slc9a3 UTSW 13 74158886 nonsense probably null
R4581:Slc9a3 UTSW 13 74164165 missense probably damaging 0.99
R4841:Slc9a3 UTSW 13 74165837 missense probably damaging 1.00
R4928:Slc9a3 UTSW 13 74157719 missense probably damaging 1.00
R4965:Slc9a3 UTSW 13 74164293 missense possibly damaging 0.62
R5079:Slc9a3 UTSW 13 74164287 missense probably damaging 0.97
R5329:Slc9a3 UTSW 13 74150960 missense possibly damaging 0.94
R5663:Slc9a3 UTSW 13 74163712 missense probably damaging 0.98
R5876:Slc9a3 UTSW 13 74161723 missense probably damaging 1.00
R5919:Slc9a3 UTSW 13 74158740 missense probably damaging 0.98
R6060:Slc9a3 UTSW 13 74150885 missense probably damaging 1.00
R6562:Slc9a3 UTSW 13 74155161 missense probably damaging 1.00
R6645:Slc9a3 UTSW 13 74164172 missense probably damaging 0.99
Posted On2014-02-04