Mutagenetix > Incidental Mutation

Incidental Mutation 'R1341:Pramel29'

157035

Institutional Source

Beutler Lab

Gene Symbol

Pramel29

Ensembl Gene

ENSMUSG00000046262

Gene Name

PRAME like 29

Synonyms

C87977

MMRRC Submission

039406-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.126) question?

Stock #

R1341 (G1)

Quality Score

150

Status

Not validated

Chromosome

Chromosomal Location

143933332-143939587 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 143934129 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 326 (D326G)

Ref Sequence

ENSEMBL: ENSMUSP00000101383 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000105753] [ENSMUST00000105754] [ENSMUST00000105755] [ENSMUST00000105757] [ENSMUST00000146836] [ENSMUST00000147855]

AlphaFold

A2A958

Predicted Effect

probably benign
Transcript: ENSMUST00000105753

Predicted Effect

probably benign
Transcript: ENSMUST00000105754

Predicted Effect

probably damaging
Transcript: ENSMUST00000105755
AA Change: D156G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000101381
Gene: ENSMUSG00000046262
AA Change: D156G

Domain	Start	End	E-Value	Type
SCOP:d1a4ya_	52	250	9e-9	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000105757
AA Change: D326G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000101383
Gene: ENSMUSG00000046262
AA Change: D326G

Domain	Start	End	E-Value	Type
SCOP:d1a4ya_	222	420	1e-9	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132946

Predicted Effect

probably benign
Transcript: ENSMUST00000146836

Predicted Effect

probably benign
Transcript: ENSMUST00000147855

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.1%
20x: 88.9%

Validation Efficiency

96% (53/55)

Allele List at MGI

Other mutations in this stock

Total: 46 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Atp6v0e2	A	G	6: 48,517,045 (GRCm39)	Y75C	probably benign	Het
Bltp3a	T	C	17: 28,096,393 (GRCm39)		probably benign	Het
Cacna1g	A	G	11: 94,324,582 (GRCm39)	L1190P	probably damaging	Het
Ccdc190	A	G	1: 169,757,586 (GRCm39)	D15G	probably damaging	Het
Cep126	G	T	9: 8,099,777 (GRCm39)	P919Q	possibly damaging	Het
Cfhr4	T	A	1: 139,660,131 (GRCm39)	T665S	probably damaging	Het
Chchd6	A	G	6: 89,361,623 (GRCm39)	V260A	probably benign	Het
Col1a2	G	A	6: 4,518,822 (GRCm39)		probably benign	Het
Cramp1	T	C	17: 25,196,514 (GRCm39)	K867E	probably damaging	Het
Dnah6	A	T	6: 73,168,602 (GRCm39)	N440K	probably benign	Het
Fbxw15	G	A	9: 109,387,314 (GRCm39)	S227F	probably damaging	Het
Gjb3	G	A	4: 127,220,224 (GRCm39)	R103W	probably damaging	Het
Gm17421	A	T	12: 113,333,334 (GRCm39)		noncoding transcript	Het
H2bc13	T	C	13: 21,900,280 (GRCm39)	K12E	probably benign	Het
Hdac3	A	G	18: 38,087,766 (GRCm39)	V36A	probably damaging	Het
Hoxa13	CCG	CCGCG	6: 52,237,618 (GRCm39)		probably null	Het
Itga10	G	A	3: 96,559,811 (GRCm39)	E489K	probably damaging	Het
Mgat5b	A	C	11: 116,869,223 (GRCm39)	I589L	probably benign	Het
Mindy4	A	G	6: 55,232,601 (GRCm39)	N348S	probably benign	Het
Mmp15	A	G	8: 96,098,931 (GRCm39)	D586G	probably benign	Het
Mmp9	A	G	2: 164,791,247 (GRCm39)	D139G	probably damaging	Het
Morc2a	C	A	11: 3,630,216 (GRCm39)	L471I	possibly damaging	Het
Mycbp2	T	A	14: 103,536,303 (GRCm39)		probably benign	Het
Mylip	T	A	13: 45,559,412 (GRCm39)	S105T	probably damaging	Het
Nat8f4	A	T	6: 85,878,406 (GRCm39)	L39Q	probably damaging	Het
Nrbp1	T	A	5: 31,403,157 (GRCm39)	I210N	probably damaging	Het
Obscn	T	C	11: 58,920,198 (GRCm39)		probably benign	Het
Or10ak13	T	C	4: 118,639,579 (GRCm39)	T68A	probably benign	Het
Or11m3	G	A	15: 98,396,135 (GRCm39)	V261M	possibly damaging	Het
Or51k2	T	A	7: 103,596,589 (GRCm39)	V272D	possibly damaging	Het
Or5t7	T	C	2: 86,507,507 (GRCm39)	M57V	possibly damaging	Het
Or9k2	G	T	10: 129,999,185 (GRCm39)	D3E	probably benign	Het
Prl2c2	G	C	13: 13,176,786 (GRCm39)	T47R	probably damaging	Het
Rab11fip1	G	T	8: 27,633,388 (GRCm39)	A1106E	probably damaging	Het
Rfc1	A	G	5: 65,448,537 (GRCm39)	S363P	probably damaging	Het
Skint10	A	G	4: 112,622,228 (GRCm39)		probably benign	Het
Spen	T	C	4: 141,196,711 (GRCm39)	N3595D	possibly damaging	Het
Swsap1	A	G	9: 21,868,450 (GRCm39)	K241E	probably benign	Het
Tab1	A	G	15: 80,044,315 (GRCm39)	T448A	possibly damaging	Het
Tktl1	G	T	X: 73,241,289 (GRCm39)	G302V	probably damaging	Het
Usp25	A	G	16: 76,912,331 (GRCm39)	T1017A	probably benign	Het
Vmn2r78	T	A	7: 86,571,477 (GRCm39)	M429K	possibly damaging	Het
Wdr49	A	T	3: 75,336,640 (GRCm39)	F356I	probably damaging	Het
Wnt1	T	C	15: 98,689,764 (GRCm39)	F184L	probably damaging	Het
Yy1	T	C	12: 108,759,445 (GRCm39)	I36T	unknown	Het
Zbtb39	A	G	10: 127,579,369 (GRCm39)	I648V	possibly damaging	Het

Other mutations in Pramel29

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01024:Pramel29	APN	4	143,935,045 (GRCm39)	missense	possibly damaging	0.58
IGL02950:Pramel29	APN	4	143,939,531 (GRCm39)	missense	probably benign	0.06
IGL03174:Pramel29	APN	4	143,935,000 (GRCm39)	missense	probably benign
IGL03178:Pramel29	APN	4	143,934,821 (GRCm39)	critical splice donor site	probably null
PIT4812001:Pramel29	UTSW	4	143,936,086 (GRCm39)	missense	probably benign
R0622:Pramel29	UTSW	4	143,939,583 (GRCm39)	unclassified	probably benign
R0634:Pramel29	UTSW	4	143,935,910 (GRCm39)	critical splice donor site	probably null
R1127:Pramel29	UTSW	4	143,933,694 (GRCm39)	missense	probably damaging	1.00
R1697:Pramel29	UTSW	4	143,935,162 (GRCm39)	missense	probably damaging	1.00
R1827:Pramel29	UTSW	4	143,936,180 (GRCm39)	missense	probably damaging	0.99
R1857:Pramel29	UTSW	4	143,935,091 (GRCm39)	missense	possibly damaging	0.74
R2859:Pramel29	UTSW	4	143,936,192 (GRCm39)	missense	probably benign	0.11
R4063:Pramel29	UTSW	4	143,935,265 (GRCm39)	missense	possibly damaging	0.87
R4114:Pramel29	UTSW	4	143,936,173 (GRCm39)	missense	probably damaging	1.00
R4130:Pramel29	UTSW	4	143,935,379 (GRCm39)	missense	probably damaging	0.99
R4255:Pramel29	UTSW	4	143,934,054 (GRCm39)	missense	possibly damaging	0.68
R4704:Pramel29	UTSW	4	143,935,162 (GRCm39)	missense	probably damaging	1.00
R4840:Pramel29	UTSW	4	143,935,144 (GRCm39)	missense	probably damaging	0.98
R5267:Pramel29	UTSW	4	143,939,575 (GRCm39)	unclassified	probably benign
R5670:Pramel29	UTSW	4	143,936,192 (GRCm39)	missense	probably benign	0.11
R6149:Pramel29	UTSW	4	143,933,983 (GRCm39)	missense	probably damaging	0.98
R6508:Pramel29	UTSW	4	143,934,171 (GRCm39)	nonsense	probably null
R6528:Pramel29	UTSW	4	143,935,381 (GRCm39)	missense	probably damaging	0.99
R7252:Pramel29	UTSW	4	143,939,510 (GRCm39)	missense	possibly damaging	0.95
R7564:Pramel29	UTSW	4	143,939,525 (GRCm39)	missense	probably damaging	1.00
R7704:Pramel29	UTSW	4	143,935,091 (GRCm39)	missense	possibly damaging	0.74
R8737:Pramel29	UTSW	4	143,935,192 (GRCm39)	missense	probably damaging	1.00
R9703:Pramel29	UTSW	4	143,939,510 (GRCm39)	missense	probably damaging	0.97
Z1176:Pramel29	UTSW	4	143,934,031 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- GCAAGGCACTGAACTGAAAGTCCAC -3'
(R):5'- TTCCAGCCATGCCCTGAATCATGC -3'

Sequencing Primer
(F):5'- GCACTGAACTGAAAGTCCACTATAC -3'
(R):5'- ATGCCCTGAATCATGCCTATAGTG -3'

Posted On

2014-02-11