Mutagenetix > Incidental Mutation

Incidental Mutation 'R1309:Dip2a'

157882

Institutional Source

Beutler Lab

Gene Symbol

Dip2a

Ensembl Gene

ENSMUSG00000020231

Gene Name

disco interacting protein 2 homolog A

Synonyms

Dip2, Kiaa0184-hp, 4931420H10Rik

MMRRC Submission

039375-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1309 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

76098581-76181194 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 76115610 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 939 (L939P)

Ref Sequence

ENSEMBL: ENSMUSP00000125184 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036033] [ENSMUST00000105417] [ENSMUST00000160048] [ENSMUST00000160442]

AlphaFold

Q8BWT5

Predicted Effect

probably damaging
Transcript: ENSMUST00000036033
AA Change: L978P

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000043710
Gene: ENSMUSG00000020231
AA Change: L978P

Domain	Start	End	E-Value	Type
DMAP_binding	9	122	2.55e-35	SMART
low complexity region	173	208	N/A	INTRINSIC
low complexity region	281	293	N/A	INTRINSIC
Pfam:AMP-binding	330	806	4.3e-26	PFAM
Pfam:AMP-binding	982	1456	1.4e-52	PFAM
low complexity region	1487	1498	N/A	INTRINSIC
low complexity region	1511	1532	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000105417
AA Change: L988P

PolyPhen 2 Score 0.981 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000101057
Gene: ENSMUSG00000020231
AA Change: L988P

Domain	Start	End	E-Value	Type
DMAP_binding	9	122	2.55e-35	SMART
low complexity region	173	208	N/A	INTRINSIC
low complexity region	281	293	N/A	INTRINSIC
Pfam:AMP-binding	330	806	6.6e-28	PFAM
Pfam:AMP-binding	992	1466	7.3e-65	PFAM
low complexity region	1497	1508	N/A	INTRINSIC
low complexity region	1521	1542	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159807

Predicted Effect

probably damaging
Transcript: ENSMUST00000160048
AA Change: L939P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000125184
Gene: ENSMUSG00000020231
AA Change: L939P

Domain	Start	End	E-Value	Type
DMAP_binding	9	83	7.94e-23	SMART
low complexity region	134	169	N/A	INTRINSIC
low complexity region	242	254	N/A	INTRINSIC
Pfam:AMP-binding	291	767	5.3e-26	PFAM
Pfam:AMP-binding	943	1417	1.7e-52	PFAM
low complexity region	1448	1459	N/A	INTRINSIC
low complexity region	1472	1493	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160442

SMART Domains

Protein: ENSMUSP00000125744
Gene: ENSMUSG00000020231

Domain	Start	End	E-Value	Type
low complexity region	37	48	N/A	INTRINSIC

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.6%
20x: 90.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene may be involved in axon patterning in the central nervous system. This gene is not highly expressed. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2009]

Allele List at MGI

Other mutations in this stock

Total: 18 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alkbh2	C	T	5: 114,262,287 (GRCm39)	E148K	probably damaging	Het
Angptl2	G	A	2: 33,136,140 (GRCm39)	A442T	probably benign	Het
Ankar	T	C	1: 72,713,163 (GRCm39)	I709V	possibly damaging	Het
Asb2	A	G	12: 103,291,667 (GRCm39)	V372A	probably benign	Het
Ccm2l	A	T	2: 152,912,844 (GRCm39)	I129F	probably damaging	Het
Cdkal1	T	A	13: 29,541,566 (GRCm39)	I433F	possibly damaging	Het
Cpsf7	T	C	19: 10,510,831 (GRCm39)		probably null	Het
Dhx37	C	T	5: 125,494,502 (GRCm39)	W944*	probably null	Het
Kera	A	G	10: 97,445,288 (GRCm39)	T216A	possibly damaging	Het
Lmnb1	CAGAGAGAGAGAGA	CAGAGAGAGAGA	18: 56,872,976 (GRCm39)		probably null	Het
Or2ad1	C	T	13: 21,326,337 (GRCm39)	V297I	probably benign	Het
Prep	A	G	10: 45,002,122 (GRCm39)	T426A	probably benign	Het
Rxfp1	C	T	3: 79,570,599 (GRCm39)		probably null	Het
Spag6	A	G	2: 18,739,027 (GRCm39)	Y319C	probably damaging	Het
Stk24	A	G	14: 121,540,198 (GRCm39)	Y134H	probably damaging	Het
Tdrd6	T	C	17: 43,937,512 (GRCm39)	I1179V	probably benign	Het
Tedc1	A	G	12: 113,125,400 (GRCm39)	E274G	probably benign	Het
Zswim2	A	T	2: 83,769,100 (GRCm39)	F87Y	probably damaging	Het

Other mutations in Dip2a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00422:Dip2a	APN	10	76,149,070 (GRCm39)	missense	probably benign
IGL00849:Dip2a	APN	10	76,128,152 (GRCm39)	missense	probably damaging	0.99
IGL01685:Dip2a	APN	10	76,163,583 (GRCm39)	missense	probably damaging	1.00
IGL01825:Dip2a	APN	10	76,108,514 (GRCm39)	nonsense	probably null
IGL02343:Dip2a	APN	10	76,155,312 (GRCm39)	missense	probably benign	0.00
IGL02437:Dip2a	APN	10	76,134,101 (GRCm39)	missense	probably benign	0.09
IGL02981:Dip2a	APN	10	76,112,255 (GRCm39)	missense	possibly damaging	0.84
IGL03122:Dip2a	APN	10	76,110,880 (GRCm39)	missense	probably benign	0.00
IGL03261:Dip2a	APN	10	76,140,982 (GRCm39)	missense	possibly damaging	0.80
R0369:Dip2a	UTSW	10	76,134,621 (GRCm39)	missense	probably damaging	1.00
R0522:Dip2a	UTSW	10	76,157,365 (GRCm39)	missense	probably benign	0.03
R0962:Dip2a	UTSW	10	76,128,266 (GRCm39)	unclassified	probably benign
R1164:Dip2a	UTSW	10	76,112,231 (GRCm39)	missense	possibly damaging	0.72
R1426:Dip2a	UTSW	10	76,115,654 (GRCm39)	unclassified	probably benign
R1636:Dip2a	UTSW	10	76,157,412 (GRCm39)	missense	probably benign	0.01
R1823:Dip2a	UTSW	10	76,114,336 (GRCm39)	nonsense	probably null
R1830:Dip2a	UTSW	10	76,153,797 (GRCm39)	missense	probably damaging	1.00
R1876:Dip2a	UTSW	10	76,153,925 (GRCm39)	missense	probably damaging	1.00
R2284:Dip2a	UTSW	10	76,149,027 (GRCm39)	missense	probably benign	0.01
R2369:Dip2a	UTSW	10	76,149,030 (GRCm39)	missense	probably benign
R4050:Dip2a	UTSW	10	76,114,441 (GRCm39)	missense	probably damaging	1.00
R4089:Dip2a	UTSW	10	76,114,323 (GRCm39)	splice site	probably null
R4231:Dip2a	UTSW	10	76,155,304 (GRCm39)	missense	probably damaging	1.00
R4715:Dip2a	UTSW	10	76,132,240 (GRCm39)	missense	probably benign	0.34
R4752:Dip2a	UTSW	10	76,112,491 (GRCm39)	missense	probably damaging	1.00
R4846:Dip2a	UTSW	10	76,157,327 (GRCm39)	missense	probably damaging	1.00
R4849:Dip2a	UTSW	10	76,130,367 (GRCm39)	missense	probably damaging	1.00
R4892:Dip2a	UTSW	10	76,116,593 (GRCm39)	missense	probably benign	0.02
R4998:Dip2a	UTSW	10	76,155,390 (GRCm39)	nonsense	probably null
R5068:Dip2a	UTSW	10	76,153,877 (GRCm39)	missense	possibly damaging	0.82
R5141:Dip2a	UTSW	10	76,106,287 (GRCm39)	missense	probably damaging	1.00
R5253:Dip2a	UTSW	10	76,135,831 (GRCm39)	missense	probably damaging	1.00
R5304:Dip2a	UTSW	10	76,130,357 (GRCm39)	missense	possibly damaging	0.67
R5324:Dip2a	UTSW	10	76,132,227 (GRCm39)	missense	probably damaging	1.00
R5369:Dip2a	UTSW	10	76,128,194 (GRCm39)	missense	probably damaging	1.00
R6272:Dip2a	UTSW	10	76,122,241 (GRCm39)	makesense	probably null
R6884:Dip2a	UTSW	10	76,108,366 (GRCm39)	critical splice donor site	probably null
R7143:Dip2a	UTSW	10	76,133,625 (GRCm39)	missense	probably damaging	1.00
R7247:Dip2a	UTSW	10	76,108,366 (GRCm39)	critical splice donor site	probably null
R7252:Dip2a	UTSW	10	76,109,036 (GRCm39)	missense	not run
R7327:Dip2a	UTSW	10	76,108,396 (GRCm39)	missense	probably benign	0.41
R7334:Dip2a	UTSW	10	76,110,080 (GRCm39)	missense	possibly damaging	0.91
R7349:Dip2a	UTSW	10	76,121,426 (GRCm39)	missense	probably damaging	1.00
R7360:Dip2a	UTSW	10	76,114,394 (GRCm39)	missense	probably damaging	1.00
R7513:Dip2a	UTSW	10	76,149,069 (GRCm39)	missense	probably benign
R7793:Dip2a	UTSW	10	76,114,417 (GRCm39)	missense	probably benign	0.06
R7794:Dip2a	UTSW	10	76,112,459 (GRCm39)	missense	probably damaging	1.00
R7819:Dip2a	UTSW	10	76,126,862 (GRCm39)	missense	probably benign	0.06
R8079:Dip2a	UTSW	10	76,123,155 (GRCm39)	missense	probably benign
R8280:Dip2a	UTSW	10	76,100,610 (GRCm39)	missense	possibly damaging	0.75
R8281:Dip2a	UTSW	10	76,112,438 (GRCm39)	missense	probably damaging	1.00
R8286:Dip2a	UTSW	10	76,122,297 (GRCm39)	missense	probably benign
R8350:Dip2a	UTSW	10	76,100,690 (GRCm39)	missense	probably damaging	1.00
R8450:Dip2a	UTSW	10	76,100,690 (GRCm39)	missense	probably damaging	1.00
R8525:Dip2a	UTSW	10	76,110,115 (GRCm39)	critical splice acceptor site	probably null
R8824:Dip2a	UTSW	10	76,114,320 (GRCm39)	critical splice donor site	probably null
R8897:Dip2a	UTSW	10	76,110,098 (GRCm39)	missense	probably benign	0.22
R9039:Dip2a	UTSW	10	76,163,553 (GRCm39)	missense	probably benign	0.00
R9286:Dip2a	UTSW	10	76,138,096 (GRCm39)	missense	probably benign	0.05
R9504:Dip2a	UTSW	10	76,132,189 (GRCm39)	missense	probably damaging	1.00
R9523:Dip2a	UTSW	10	76,112,438 (GRCm39)	missense	probably damaging	1.00
R9628:Dip2a	UTSW	10	76,142,993 (GRCm39)	missense	probably damaging	0.99
R9732:Dip2a	UTSW	10	76,110,077 (GRCm39)	missense	probably benign	0.11
Z1088:Dip2a	UTSW	10	76,121,462 (GRCm39)	missense	probably benign	0.06
Z1176:Dip2a	UTSW	10	76,116,654 (GRCm39)	missense	probably damaging	0.97
Z1176:Dip2a	UTSW	10	76,102,157 (GRCm39)	missense	possibly damaging	0.94
Z1177:Dip2a	UTSW	10	76,132,234 (GRCm39)	missense	probably damaging	1.00
Z1177:Dip2a	UTSW	10	76,102,156 (GRCm39)	missense	possibly damaging	0.51

Predicted Primers

PCR Primer
(F):5'- CCACTGTACAAAGCACAGGTCTCTC -3'
(R):5'- TTGCAGAAGTTGGACCAGCCTC -3'

Sequencing Primer
(F):5'- CAGGTCTCTCCAAGAAAGCTGG -3'
(R):5'- TGGACCAGCCTCGATGATTG -3'

Posted On

2014-02-18