Incidental Mutation 'R1297:Vmn1r13'
ID |
158174 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r13
|
Ensembl Gene |
ENSMUSG00000064259 |
Gene Name |
vomeronasal 1 receptor 13 |
Synonyms |
V1rc5 |
MMRRC Submission |
039363-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.066)
|
Stock # |
R1297 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
6 |
Chromosomal Location |
57186843-57187745 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 57187392 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Arginine to Glycine
at position 184
(R184G)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154429
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000078885]
[ENSMUST00000226892]
[ENSMUST00000227298]
[ENSMUST00000227421]
|
AlphaFold |
G5E8I3 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000078885
AA Change: R184G
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000077924 Gene: ENSMUSG00000064259 AA Change: R184G
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
28 |
294 |
3.3e-58 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000226892
AA Change: R184G
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227298
AA Change: R184G
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227421
AA Change: R184G
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
Meta Mutation Damage Score |
0.6467 |
Coding Region Coverage |
- 1x: 99.0%
- 3x: 98.2%
- 10x: 95.8%
- 20x: 90.8%
|
Validation Efficiency |
100% (37/37) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 31 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aebp1 |
A |
G |
11: 5,820,834 (GRCm39) |
N542D |
possibly damaging |
Het |
Ap2b1 |
T |
A |
11: 83,223,935 (GRCm39) |
W217R |
probably damaging |
Het |
Cep290 |
T |
A |
10: 100,374,962 (GRCm39) |
|
probably benign |
Het |
Col27a1 |
G |
A |
4: 63,183,868 (GRCm39) |
|
probably benign |
Het |
Cyp2d12 |
A |
T |
15: 82,441,887 (GRCm39) |
H109L |
probably benign |
Het |
Dnah17 |
T |
C |
11: 118,012,192 (GRCm39) |
|
probably benign |
Het |
Golga3 |
G |
A |
5: 110,352,709 (GRCm39) |
A867T |
probably benign |
Het |
Gstt4 |
T |
A |
10: 75,653,133 (GRCm39) |
N143I |
possibly damaging |
Het |
Hdac2 |
G |
A |
10: 36,862,370 (GRCm39) |
R78Q |
possibly damaging |
Het |
Itsn2 |
T |
C |
12: 4,750,378 (GRCm39) |
I1241T |
probably damaging |
Het |
Kalrn |
T |
C |
16: 33,836,868 (GRCm39) |
K2249R |
probably damaging |
Het |
Klrg1 |
T |
A |
6: 122,250,538 (GRCm39) |
I138F |
probably benign |
Het |
Mast1 |
A |
G |
8: 85,639,345 (GRCm39) |
V1328A |
probably benign |
Het |
Mettl25 |
T |
C |
10: 105,659,126 (GRCm39) |
S386G |
probably benign |
Het |
Nme2 |
A |
T |
11: 93,842,782 (GRCm39) |
N210K |
possibly damaging |
Het |
Pgap1 |
T |
C |
1: 54,567,682 (GRCm39) |
S388G |
possibly damaging |
Het |
Pgk2 |
C |
A |
17: 40,519,255 (GRCm39) |
V58L |
probably benign |
Het |
Phf11 |
A |
T |
14: 59,495,996 (GRCm39) |
H39Q |
probably benign |
Het |
Pou6f1 |
T |
A |
15: 100,476,186 (GRCm39) |
T292S |
probably damaging |
Het |
Rbm5 |
G |
A |
9: 107,621,441 (GRCm39) |
R15C |
probably damaging |
Het |
Rnf215 |
T |
C |
11: 4,089,806 (GRCm39) |
V273A |
possibly damaging |
Het |
Rras |
A |
G |
7: 44,670,003 (GRCm39) |
D145G |
probably damaging |
Het |
Safb2 |
T |
C |
17: 56,891,265 (GRCm39) |
|
probably benign |
Het |
Setdb1 |
A |
T |
3: 95,257,187 (GRCm39) |
|
probably benign |
Het |
Sp5 |
A |
G |
2: 70,306,873 (GRCm39) |
D186G |
probably benign |
Het |
Thada |
A |
G |
17: 84,559,863 (GRCm39) |
|
probably benign |
Het |
Tle1 |
A |
G |
4: 72,043,075 (GRCm39) |
V598A |
probably damaging |
Het |
Tnrc6c |
A |
G |
11: 117,624,529 (GRCm39) |
N947S |
possibly damaging |
Het |
Tnxb |
T |
C |
17: 34,929,140 (GRCm39) |
S2728P |
probably damaging |
Het |
Wdr24 |
C |
T |
17: 26,046,322 (GRCm39) |
T522I |
possibly damaging |
Het |
Zfyve16 |
A |
G |
13: 92,658,840 (GRCm39) |
V357A |
probably benign |
Het |
|
Other mutations in Vmn1r13 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00870:Vmn1r13
|
APN |
6 |
57,187,098 (GRCm39) |
missense |
probably benign |
0.10 |
IGL01511:Vmn1r13
|
APN |
6 |
57,187,314 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02412:Vmn1r13
|
APN |
6 |
57,187,474 (GRCm39) |
missense |
possibly damaging |
0.46 |
IGL02455:Vmn1r13
|
APN |
6 |
57,187,457 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03046:Vmn1r13
|
APN |
6 |
57,187,717 (GRCm39) |
missense |
probably benign |
|
R0285:Vmn1r13
|
UTSW |
6 |
57,186,979 (GRCm39) |
missense |
probably benign |
0.06 |
R0304:Vmn1r13
|
UTSW |
6 |
57,187,611 (GRCm39) |
missense |
probably benign |
0.01 |
R0385:Vmn1r13
|
UTSW |
6 |
57,187,690 (GRCm39) |
missense |
probably benign |
0.06 |
R0402:Vmn1r13
|
UTSW |
6 |
57,187,083 (GRCm39) |
missense |
possibly damaging |
0.96 |
R0544:Vmn1r13
|
UTSW |
6 |
57,187,248 (GRCm39) |
missense |
probably benign |
|
R0960:Vmn1r13
|
UTSW |
6 |
57,186,996 (GRCm39) |
missense |
probably benign |
0.06 |
R4056:Vmn1r13
|
UTSW |
6 |
57,186,970 (GRCm39) |
missense |
probably benign |
0.03 |
R5108:Vmn1r13
|
UTSW |
6 |
57,186,901 (GRCm39) |
missense |
probably benign |
0.33 |
R6388:Vmn1r13
|
UTSW |
6 |
57,186,903 (GRCm39) |
missense |
probably benign |
0.01 |
R7136:Vmn1r13
|
UTSW |
6 |
57,187,239 (GRCm39) |
missense |
possibly damaging |
0.93 |
R7204:Vmn1r13
|
UTSW |
6 |
57,187,141 (GRCm39) |
missense |
probably benign |
0.13 |
R7239:Vmn1r13
|
UTSW |
6 |
57,187,611 (GRCm39) |
missense |
probably benign |
0.01 |
R7303:Vmn1r13
|
UTSW |
6 |
57,187,587 (GRCm39) |
missense |
probably damaging |
1.00 |
R7997:Vmn1r13
|
UTSW |
6 |
57,187,329 (GRCm39) |
missense |
possibly damaging |
0.81 |
R8759:Vmn1r13
|
UTSW |
6 |
57,187,524 (GRCm39) |
missense |
probably damaging |
1.00 |
R9623:Vmn1r13
|
UTSW |
6 |
57,187,549 (GRCm39) |
missense |
probably benign |
0.00 |
X0066:Vmn1r13
|
UTSW |
6 |
57,187,582 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
Predicted Primers |
PCR Primer
(F):5'- GCTGTCACAATCAGTCCGAGTACC -3'
(R):5'- TGGATGAGAGGATGAAGTCCACCC -3'
Sequencing Primer
(F):5'- AGTCCGAGTACCTCTATGCTGG -3'
(R):5'- GGATGAAGTCCACCCAGTACAAG -3'
|
Posted On |
2014-02-18 |