Incidental Mutation 'R1297:Vmn1r13'
ID 158174
Institutional Source Beutler Lab
Gene Symbol Vmn1r13
Ensembl Gene ENSMUSG00000064259
Gene Name vomeronasal 1 receptor 13
Synonyms V1rc5
MMRRC Submission 039363-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.066) question?
Stock # R1297 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 57186843-57187745 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 57187392 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Glycine at position 184 (R184G)
Ref Sequence ENSEMBL: ENSMUSP00000154429 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000078885] [ENSMUST00000226892] [ENSMUST00000227298] [ENSMUST00000227421]
AlphaFold G5E8I3
Predicted Effect probably damaging
Transcript: ENSMUST00000078885
AA Change: R184G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000077924
Gene: ENSMUSG00000064259
AA Change: R184G

DomainStartEndE-ValueType
Pfam:V1R 28 294 3.3e-58 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000226892
AA Change: R184G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
Predicted Effect probably damaging
Transcript: ENSMUST00000227298
AA Change: R184G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
Predicted Effect probably damaging
Transcript: ENSMUST00000227421
AA Change: R184G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.2%
  • 10x: 95.8%
  • 20x: 90.8%
Validation Efficiency 100% (37/37)
Allele List at MGI
Other mutations in this stock
Total: 31 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aebp1 A G 11: 5,820,834 (GRCm39) N542D possibly damaging Het
Ap2b1 T A 11: 83,223,935 (GRCm39) W217R probably damaging Het
Cep290 T A 10: 100,374,962 (GRCm39) probably benign Het
Col27a1 G A 4: 63,183,868 (GRCm39) probably benign Het
Cyp2d12 A T 15: 82,441,887 (GRCm39) H109L probably benign Het
Dnah17 T C 11: 118,012,192 (GRCm39) probably benign Het
Golga3 G A 5: 110,352,709 (GRCm39) A867T probably benign Het
Gstt4 T A 10: 75,653,133 (GRCm39) N143I possibly damaging Het
Hdac2 G A 10: 36,862,370 (GRCm39) R78Q possibly damaging Het
Itsn2 T C 12: 4,750,378 (GRCm39) I1241T probably damaging Het
Kalrn T C 16: 33,836,868 (GRCm39) K2249R probably damaging Het
Klrg1 T A 6: 122,250,538 (GRCm39) I138F probably benign Het
Mast1 A G 8: 85,639,345 (GRCm39) V1328A probably benign Het
Mettl25 T C 10: 105,659,126 (GRCm39) S386G probably benign Het
Nme2 A T 11: 93,842,782 (GRCm39) N210K possibly damaging Het
Pgap1 T C 1: 54,567,682 (GRCm39) S388G possibly damaging Het
Pgk2 C A 17: 40,519,255 (GRCm39) V58L probably benign Het
Phf11 A T 14: 59,495,996 (GRCm39) H39Q probably benign Het
Pou6f1 T A 15: 100,476,186 (GRCm39) T292S probably damaging Het
Rbm5 G A 9: 107,621,441 (GRCm39) R15C probably damaging Het
Rnf215 T C 11: 4,089,806 (GRCm39) V273A possibly damaging Het
Rras A G 7: 44,670,003 (GRCm39) D145G probably damaging Het
Safb2 T C 17: 56,891,265 (GRCm39) probably benign Het
Setdb1 A T 3: 95,257,187 (GRCm39) probably benign Het
Sp5 A G 2: 70,306,873 (GRCm39) D186G probably benign Het
Thada A G 17: 84,559,863 (GRCm39) probably benign Het
Tle1 A G 4: 72,043,075 (GRCm39) V598A probably damaging Het
Tnrc6c A G 11: 117,624,529 (GRCm39) N947S possibly damaging Het
Tnxb T C 17: 34,929,140 (GRCm39) S2728P probably damaging Het
Wdr24 C T 17: 26,046,322 (GRCm39) T522I possibly damaging Het
Zfyve16 A G 13: 92,658,840 (GRCm39) V357A probably benign Het
Other mutations in Vmn1r13
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00870:Vmn1r13 APN 6 57,187,098 (GRCm39) missense probably benign 0.10
IGL01511:Vmn1r13 APN 6 57,187,314 (GRCm39) missense probably benign 0.00
IGL02412:Vmn1r13 APN 6 57,187,474 (GRCm39) missense possibly damaging 0.46
IGL02455:Vmn1r13 APN 6 57,187,457 (GRCm39) missense probably damaging 1.00
IGL03046:Vmn1r13 APN 6 57,187,717 (GRCm39) missense probably benign
R0285:Vmn1r13 UTSW 6 57,186,979 (GRCm39) missense probably benign 0.06
R0304:Vmn1r13 UTSW 6 57,187,611 (GRCm39) missense probably benign 0.01
R0385:Vmn1r13 UTSW 6 57,187,690 (GRCm39) missense probably benign 0.06
R0402:Vmn1r13 UTSW 6 57,187,083 (GRCm39) missense possibly damaging 0.96
R0544:Vmn1r13 UTSW 6 57,187,248 (GRCm39) missense probably benign
R0960:Vmn1r13 UTSW 6 57,186,996 (GRCm39) missense probably benign 0.06
R4056:Vmn1r13 UTSW 6 57,186,970 (GRCm39) missense probably benign 0.03
R5108:Vmn1r13 UTSW 6 57,186,901 (GRCm39) missense probably benign 0.33
R6388:Vmn1r13 UTSW 6 57,186,903 (GRCm39) missense probably benign 0.01
R7136:Vmn1r13 UTSW 6 57,187,239 (GRCm39) missense possibly damaging 0.93
R7204:Vmn1r13 UTSW 6 57,187,141 (GRCm39) missense probably benign 0.13
R7239:Vmn1r13 UTSW 6 57,187,611 (GRCm39) missense probably benign 0.01
R7303:Vmn1r13 UTSW 6 57,187,587 (GRCm39) missense probably damaging 1.00
R7997:Vmn1r13 UTSW 6 57,187,329 (GRCm39) missense possibly damaging 0.81
R8759:Vmn1r13 UTSW 6 57,187,524 (GRCm39) missense probably damaging 1.00
R9623:Vmn1r13 UTSW 6 57,187,549 (GRCm39) missense probably benign 0.00
X0066:Vmn1r13 UTSW 6 57,187,582 (GRCm39) missense possibly damaging 0.90
Predicted Primers PCR Primer
(F):5'- GCTGTCACAATCAGTCCGAGTACC -3'
(R):5'- TGGATGAGAGGATGAAGTCCACCC -3'

Sequencing Primer
(F):5'- AGTCCGAGTACCTCTATGCTGG -3'
(R):5'- GGATGAAGTCCACCCAGTACAAG -3'
Posted On 2014-02-18