Mutagenetix > Incidental Mutation

Incidental Mutation 'R1457:Arhgap24'

158559

Institutional Source

Beutler Lab

Gene Symbol

Arhgap24

Ensembl Gene

ENSMUSG00000057315

Gene Name

Rho GTPase activating protein 24

Synonyms

0610025G21Rik

MMRRC Submission

039512-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1457 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

102629257-103045803 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 102811972 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 66 (N66K)

Ref Sequence

ENSEMBL: ENSMUSP00000092138 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000073302] [ENSMUST00000094559] [ENSMUST00000112854]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000073302

SMART Domains

Protein: ENSMUSP00000073028
Gene: ENSMUSG00000057315

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000094559
AA Change: N66K

PolyPhen 2 Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000092138
Gene: ENSMUSG00000057315
AA Change: N66K

Domain	Start	End	E-Value	Type
PH	18	125	5.35e-23	SMART
RhoGAP	148	324	7.04e-67	SMART
low complexity region	566	577	N/A	INTRINSIC
low complexity region	610	629	N/A	INTRINSIC
coiled coil region	648	728	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112854

SMART Domains

Protein: ENSMUSP00000108475
Gene: ENSMUSG00000057315

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126125

Coding Region Coverage

1x: 98.9%
3x: 97.8%
10x: 94.7%
20x: 87.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a Rho-GTPase activating protein, which is specific for the small GTPase family member Rac. Binding of the encoded protein by filamin A targets it to sites of membrane protrusion, where it antognizes Rac. This results in suppression of lamellae formation and promotion of retraction to regulate cell polarity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca14	A	T	7: 119,888,683 (GRCm39)	I1210F	probably benign	Het
Ankrd17	T	C	5: 90,433,705 (GRCm39)	H688R	possibly damaging	Het
Atp1a1	C	T	3: 101,497,782 (GRCm39)	G335D	probably damaging	Het
Cacna1g	C	T	11: 94,350,381 (GRCm39)	R488H	possibly damaging	Het
Cacna1h	A	T	17: 25,616,594 (GRCm39)	V149E	probably damaging	Het
Cd22	G	T	7: 30,572,595 (GRCm39)	P338Q	probably benign	Het
Cntln	G	T	4: 85,015,076 (GRCm39)	M1122I	probably benign	Het
Cntrl	A	G	2: 35,012,768 (GRCm39)	N302S	probably benign	Het
Cog8	T	C	8: 107,779,528 (GRCm39)	R250G	probably damaging	Het
Cracdl	A	T	1: 37,665,093 (GRCm39)	Y268*	probably null	Het
Creld2	T	C	15: 88,707,956 (GRCm39)	C232R	probably damaging	Het
Cyp2b23	G	A	7: 26,372,574 (GRCm39)	P347L	probably damaging	Het
Dnah5	T	C	15: 28,403,688 (GRCm39)		probably null	Het
Eml6	C	T	11: 29,974,459 (GRCm39)	V40I	probably damaging	Het
Epb42	C	T	2: 120,860,448 (GRCm39)		probably null	Het
Fcrla	A	G	1: 170,748,573 (GRCm39)	L190P	probably damaging	Het
Galnt18	A	T	7: 111,378,635 (GRCm39)	Y40*	probably null	Het
Gdf7	A	T	12: 8,348,073 (GRCm39)	M416K	probably damaging	Het
Gm11232	T	A	4: 71,675,156 (GRCm39)		probably null	Het
Gpam	T	A	19: 55,076,608 (GRCm39)	N198Y	probably damaging	Het
Grip1	C	T	10: 119,822,255 (GRCm39)	S327F	possibly damaging	Het
Hey2	C	T	10: 30,710,352 (GRCm39)	A134T	probably benign	Het
Kat6a	T	C	8: 23,428,668 (GRCm39)	I1341T	probably benign	Het
Kcnd3	T	C	3: 105,575,502 (GRCm39)	L542P	probably benign	Het
Lars1	G	A	18: 42,343,115 (GRCm39)	R1101C	probably damaging	Het
Lman2	T	C	13: 55,499,064 (GRCm39)	D234G	probably benign	Het
Map3k19	A	C	1: 127,745,635 (GRCm39)	I1273R	probably damaging	Het
Matn1	T	A	4: 130,677,330 (GRCm39)	F180I	possibly damaging	Het
Meikin	T	A	11: 54,261,767 (GRCm39)	L61*	probably null	Het
Mroh2b	G	T	15: 4,955,166 (GRCm39)	D720Y	probably damaging	Het
Myh13	T	C	11: 67,221,872 (GRCm39)	I199T	probably damaging	Het
Myh4	T	A	11: 67,139,287 (GRCm39)	S535T	probably damaging	Het
Myo5a	T	C	9: 75,120,347 (GRCm39)	M1715T	probably damaging	Het
Nat8	A	T	6: 85,807,971 (GRCm39)	V54D	probably damaging	Het
Nbea	A	G	3: 55,992,748 (GRCm39)	V286A	probably damaging	Het
Ndnf	A	G	6: 65,680,998 (GRCm39)	K426E	possibly damaging	Het
Nup210l	T	A	3: 90,098,279 (GRCm39)	N1410K	possibly damaging	Het
Oca2	A	T	7: 55,971,269 (GRCm39)	T399S	probably damaging	Het
Or10al2	A	T	17: 37,983,816 (GRCm39)	K301*	probably null	Het
Or1af1	A	C	2: 37,109,671 (GRCm39)	T57P	possibly damaging	Het
Or51a43	A	T	7: 103,717,666 (GRCm39)	C191S	probably damaging	Het
Or52h7	T	A	7: 104,214,278 (GRCm39)	N283K	probably damaging	Het
Or8c10	G	A	9: 38,279,492 (GRCm39)	V217I	probably benign	Het
Or8j3	A	G	2: 86,028,596 (GRCm39)	S167P	probably damaging	Het
Otogl	A	C	10: 107,714,013 (GRCm39)		probably null	Het
Pde4b	C	T	4: 102,462,373 (GRCm39)	T511I	probably damaging	Het
Proser3	A	G	7: 30,239,172 (GRCm39)		probably null	Het
Psmd12	G	A	11: 107,370,472 (GRCm39)	V24M	probably damaging	Het
Rbm17	A	T	2: 11,598,272 (GRCm39)	M170K	probably benign	Het
Rims2	C	T	15: 39,374,710 (GRCm39)	T1064I	possibly damaging	Het
Ripor3	C	T	2: 167,834,573 (GRCm39)	V281M	probably damaging	Het
Rreb1	C	A	13: 38,130,904 (GRCm39)	Q1353K	possibly damaging	Het
Sgo2a	A	G	1: 58,054,965 (GRCm39)	D383G	probably benign	Het
Sik3	C	T	9: 46,132,446 (GRCm39)	T1346M	probably damaging	Het
Slx1b	A	T	7: 126,291,968 (GRCm39)	V63E	probably damaging	Het
Son	A	G	16: 91,453,974 (GRCm39)	D907G	probably damaging	Het
Src	G	A	2: 157,311,132 (GRCm39)	V401M	probably damaging	Het
St3gal4	T	C	9: 34,966,053 (GRCm39)	K24E	possibly damaging	Het
Stat6	A	G	10: 127,494,114 (GRCm39)	K647R	probably damaging	Het
Tbl1xr1	G	A	3: 22,247,333 (GRCm39)		probably null	Het
Tlk2	G	A	11: 105,147,778 (GRCm39)		probably null	Het
Tmbim6	T	A	15: 99,299,496 (GRCm39)	I3K	probably benign	Het
Tmeff2	A	T	1: 51,221,026 (GRCm39)	I334F	probably damaging	Het
Ttn	T	C	2: 76,670,659 (GRCm39)		probably null	Het
Ubl7	T	A	9: 57,821,894 (GRCm39)	I81N	probably damaging	Het
Ugt1a10	A	G	1: 87,983,433 (GRCm39)	Y77C	probably damaging	Het
Uqcrfs1	A	G	13: 30,724,890 (GRCm39)	C217R	probably damaging	Het
Usp50	T	C	2: 126,603,554 (GRCm39)	T331A	probably benign	Het
Vmn1r65	A	G	7: 6,012,156 (GRCm39)	V26A	probably benign	Het
Wdfy3	A	C	5: 102,065,445 (GRCm39)	V1241G	possibly damaging	Het
Wtap	A	C	17: 13,200,631 (GRCm39)		probably null	Het
Zbtb40	C	A	4: 136,712,148 (GRCm39)	A1187S	possibly damaging	Het
Zfp57	T	C	17: 37,316,990 (GRCm39)	S20P	probably damaging	Het
Zfp592	A	G	7: 80,674,227 (GRCm39)	D397G	probably damaging	Het
Zfp747	A	T	7: 126,973,676 (GRCm39)	S165T	probably benign	Het
Zfp949	C	T	9: 88,451,891 (GRCm39)	T487I	probably damaging	Het
Zscan4d	A	G	7: 10,898,921 (GRCm39)	C119R	probably damaging	Het

Other mutations in Arhgap24

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00163:Arhgap24	APN	5	103,008,265 (GRCm39)	missense	possibly damaging	0.94
IGL01483:Arhgap24	APN	5	103,008,243 (GRCm39)	missense	possibly damaging	0.91
IGL02641:Arhgap24	APN	5	103,040,386 (GRCm39)	missense	probably damaging	1.00
IGL03166:Arhgap24	APN	5	103,023,552 (GRCm39)	splice site	probably benign
bullmarket	UTSW	5	103,023,643 (GRCm39)	missense	probably damaging	0.99
buyers	UTSW	5	103,045,086 (GRCm39)	missense	probably damaging	1.00
wallstreet	UTSW	5	102,700,163 (GRCm39)	splice site	probably null
BB009:Arhgap24	UTSW	5	102,993,835 (GRCm39)	intron	probably benign
BB019:Arhgap24	UTSW	5	102,993,835 (GRCm39)	intron	probably benign
R0506:Arhgap24	UTSW	5	103,023,643 (GRCm39)	missense	probably damaging	0.99
R0606:Arhgap24	UTSW	5	103,045,086 (GRCm39)	missense	probably damaging	1.00
R1491:Arhgap24	UTSW	5	103,008,198 (GRCm39)	missense	possibly damaging	0.47
R1707:Arhgap24	UTSW	5	103,039,953 (GRCm39)	missense	probably benign	0.40
R2112:Arhgap24	UTSW	5	103,040,366 (GRCm39)	missense	probably damaging	1.00
R2300:Arhgap24	UTSW	5	103,008,291 (GRCm39)	missense	probably damaging	1.00
R2516:Arhgap24	UTSW	5	103,039,776 (GRCm39)	missense	probably benign
R3803:Arhgap24	UTSW	5	103,040,308 (GRCm39)	missense	probably damaging	0.98
R4257:Arhgap24	UTSW	5	102,811,983 (GRCm39)	missense	probably benign	0.00
R4761:Arhgap24	UTSW	5	102,812,080 (GRCm39)	intron	probably benign
R5045:Arhgap24	UTSW	5	103,039,743 (GRCm39)	missense	possibly damaging	0.79
R5121:Arhgap24	UTSW	5	102,989,201 (GRCm39)	missense	probably damaging	1.00
R5209:Arhgap24	UTSW	5	103,040,015 (GRCm39)	missense	probably benign	0.12
R5667:Arhgap24	UTSW	5	102,994,037 (GRCm39)	critical splice donor site	probably null
R5914:Arhgap24	UTSW	5	102,700,025 (GRCm39)	splice site	probably null
R6039:Arhgap24	UTSW	5	103,028,652 (GRCm39)	missense	probably damaging	0.98
R6039:Arhgap24	UTSW	5	103,028,652 (GRCm39)	missense	probably damaging	0.98
R6158:Arhgap24	UTSW	5	103,040,778 (GRCm39)	missense	probably benign	0.12
R6410:Arhgap24	UTSW	5	103,040,017 (GRCm39)	missense	probably benign	0.10
R6450:Arhgap24	UTSW	5	103,044,990 (GRCm39)	missense	probably benign	0.01
R6520:Arhgap24	UTSW	5	103,028,659 (GRCm39)	missense	probably benign	0.00
R6666:Arhgap24	UTSW	5	102,700,163 (GRCm39)	splice site	probably null
R7233:Arhgap24	UTSW	5	103,026,367 (GRCm39)	missense	probably benign	0.03
R7311:Arhgap24	UTSW	5	103,040,551 (GRCm39)	missense	probably damaging	1.00
R7460:Arhgap24	UTSW	5	103,040,212 (GRCm39)	missense	probably benign	0.36
R7483:Arhgap24	UTSW	5	102,989,174 (GRCm39)	missense	probably benign	0.13
R7515:Arhgap24	UTSW	5	102,993,882 (GRCm39)	intron	probably benign
R7667:Arhgap24	UTSW	5	103,026,323 (GRCm39)	missense	probably benign
R7932:Arhgap24	UTSW	5	102,993,835 (GRCm39)	intron	probably benign
R8227:Arhgap24	UTSW	5	103,023,647 (GRCm39)	missense	probably benign	0.02
R8289:Arhgap24	UTSW	5	103,028,692 (GRCm39)	missense	possibly damaging	0.88
R8431:Arhgap24	UTSW	5	103,040,464 (GRCm39)	missense	possibly damaging	0.49
R8721:Arhgap24	UTSW	5	103,023,565 (GRCm39)	missense	possibly damaging	0.46
R8767:Arhgap24	UTSW	5	103,039,740 (GRCm39)	missense	probably benign
R8954:Arhgap24	UTSW	5	103,040,136 (GRCm39)	missense	probably benign	0.00
R9120:Arhgap24	UTSW	5	103,040,016 (GRCm39)	missense	probably benign	0.05
R9306:Arhgap24	UTSW	5	102,994,008 (GRCm39)	missense	possibly damaging	0.91
R9687:Arhgap24	UTSW	5	102,994,022 (GRCm39)	missense	probably benign
Z1176:Arhgap24	UTSW	5	103,028,673 (GRCm39)	missense	probably benign	0.00
Z1176:Arhgap24	UTSW	5	103,023,625 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TCACTGTGTCTCCCTGTGGTAGAAG -3'
(R):5'- TTGCCTGTGTGGATGATAGCCAAG -3'

Sequencing Primer
(F):5'- GCTCCGTAAATTTGATGGCAC -3'
(R):5'- AGCCAAGTAAATGCTTGCTCTC -3'

Posted On

2014-03-14