Incidental Mutation 'R1400:Nxf3'
ID 160362
Institutional Source Beutler Lab
Gene Symbol Nxf3
Ensembl Gene ENSMUSG00000057000
Gene Name nuclear RNA export factor 3
Synonyms LOC245610
MMRRC Submission 039462-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1400 (G1)
Quality Score 222
Status Not validated
Chromosome X
Chromosomal Location 134972848-134986004 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 134976794 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 349 (T349S)
Ref Sequence ENSEMBL: ENSMUSP00000079730 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000080929] [ENSMUST00000138878]
AlphaFold Q4ZGD9
Predicted Effect probably benign
Transcript: ENSMUST00000080929
AA Change: T349S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000079730
Gene: ENSMUSG00000057000
AA Change: T349S

DomainStartEndE-ValueType
low complexity region 11 24 N/A INTRINSIC
Pfam:Tap-RNA_bind 99 181 1.6e-34 PFAM
Pfam:NTF2 318 468 4.8e-18 PFAM
TAP_C 485 548 1.13e-19 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000138878
SMART Domains Protein: ENSMUSP00000121486
Gene: ENSMUSG00000057000

DomainStartEndE-ValueType
Pfam:Tap-RNA_bind 83 103 4.3e-9 PFAM
Coding Region Coverage
  • 1x: 98.9%
  • 3x: 98.0%
  • 10x: 95.3%
  • 20x: 89.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is one member of a family of nuclear RNA export factor genes. Common domain features of this family are a noncanonical RNP-type RNA-binding domain (RBD), 4 leucine-rich repeats (LRRs), a nuclear transport factor 2 (NTF2)-like domain that allows heterodimerization with NTF2-related export protein-1 (NXT1), and a ubiquitin-associated domain that mediates interactions with nucleoporins. The LRRs and NTF2-like domains are required for export activity. Alternative splicing seems to be a common mechanism in this gene family. The encoded protein of this gene has shortened LRR and ubiquitin-associated domains and its RDB is unable to bind RNA. It is located in the nucleoplasm but is not associated with either the nuclear envelope or the nucleolus. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal fertility and male reproductive system morphology. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
9130008F23Rik T C 17: 41,191,195 (GRCm39) E78G probably damaging Het
Acsf2 T C 11: 94,461,142 (GRCm39) I345V probably benign Het
Akap11 T A 14: 78,751,402 (GRCm39) K328N probably damaging Het
Aoc1 T A 6: 48,883,217 (GRCm39) Y364* probably null Het
Aoc1 A T 6: 48,883,645 (GRCm39) Q507L probably benign Het
Atp6v1c2 T C 12: 17,339,131 (GRCm39) T207A probably benign Het
Atr C A 9: 95,744,901 (GRCm39) Q73K probably benign Het
Cage1 A G 13: 38,216,400 (GRCm39) S17P possibly damaging Het
Cfap44 A T 16: 44,241,575 (GRCm39) I649F probably benign Het
Cops4 A G 5: 100,681,412 (GRCm39) K200R probably damaging Het
Crygd A G 1: 65,102,367 (GRCm39) S32P probably damaging Het
Cyp3a11 A G 5: 145,799,299 (GRCm39) I296T probably damaging Het
Fads3 A G 19: 10,033,664 (GRCm39) probably null Het
Fbn2 T C 18: 58,213,265 (GRCm39) E974G possibly damaging Het
Gcgr A G 11: 120,425,812 (GRCm39) H45R probably benign Het
Gcn1 T C 5: 115,752,220 (GRCm39) I2112T probably damaging Het
Gm43302 A T 5: 105,422,622 (GRCm39) I470N probably damaging Het
Hoxa13 C G 6: 52,260,647 (GRCm38) probably benign Het
Hoxa13 G C 6: 52,260,648 (GRCm38) probably benign Het
Hsh2d G A 8: 72,954,304 (GRCm39) D229N probably benign Het
Krt13 C A 11: 100,012,110 (GRCm39) G71V probably damaging Het
Las1l T C X: 94,990,506 (GRCm39) T390A possibly damaging Het
Lifr T A 15: 7,220,346 (GRCm39) V992E probably benign Het
Mbd5 T C 2: 49,164,788 (GRCm39) probably null Het
Mzf1 C A 7: 12,786,698 (GRCm39) R124L possibly damaging Het
Ndst3 A G 3: 123,350,477 (GRCm39) F636S probably damaging Het
Necab1 T C 4: 14,975,185 (GRCm39) D232G possibly damaging Het
Nlrp4e A T 7: 23,021,085 (GRCm39) E524V possibly damaging Het
Ofcc1 C T 13: 40,362,305 (GRCm39) G206R probably benign Het
Or4c12 T A 2: 89,773,886 (GRCm39) H191L possibly damaging Het
Or4n5 A T 14: 50,133,148 (GRCm39) I37K possibly damaging Het
Or7g29 A G 9: 19,286,358 (GRCm39) V273A probably damaging Het
Or9g19 T C 2: 85,600,477 (GRCm39) C111R possibly damaging Het
Plscr1l1 G T 9: 92,233,180 (GRCm39) C25F probably benign Het
Ppm1e T A 11: 87,122,592 (GRCm39) N455I probably damaging Het
Prkag2 G A 5: 25,078,916 (GRCm39) T158I probably damaging Het
Ptpn18 T C 1: 34,502,587 (GRCm39) probably null Het
Rai14 T G 15: 10,571,634 (GRCm39) K936N probably damaging Het
Rasgrf2 A G 13: 92,035,808 (GRCm39) L1077P probably damaging Het
Rgn C A X: 20,416,696 (GRCm39) Q27K probably benign Het
Ryr2 C T 13: 11,609,962 (GRCm39) S723N probably benign Het
Scamp1 A G 13: 94,361,455 (GRCm39) F142L possibly damaging Het
Selenon A G 4: 134,278,829 (GRCm39) V67A probably benign Het
Slc5a5 T C 8: 71,342,079 (GRCm39) I292V possibly damaging Het
Smarca2 C A 19: 26,654,140 (GRCm39) T775K probably damaging Het
Stab1 C T 14: 30,861,787 (GRCm39) V2437I possibly damaging Het
Tas2r143 C T 6: 42,377,317 (GRCm39) A49V probably benign Het
Tlr7 T A X: 166,090,845 (GRCm39) N214Y probably damaging Het
Unc13a C A 8: 72,103,865 (GRCm39) D856Y probably damaging Het
Upp2 T C 2: 58,680,118 (GRCm39) Y263H probably damaging Het
Vill T C 9: 118,892,415 (GRCm39) S349P probably benign Het
Zfp644 T C 5: 106,785,336 (GRCm39) probably null Het
Zfp664 T C 5: 124,963,217 (GRCm39) C204R unknown Het
Zfp729b A G 13: 67,740,913 (GRCm39) Y451H possibly damaging Het
Other mutations in Nxf3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02151:Nxf3 APN X 134,980,322 (GRCm39) missense probably damaging 1.00
R1678:Nxf3 UTSW X 134,976,270 (GRCm39) missense probably damaging 1.00
R1990:Nxf3 UTSW X 134,976,583 (GRCm39) missense possibly damaging 0.89
R1991:Nxf3 UTSW X 134,976,583 (GRCm39) missense possibly damaging 0.89
R3847:Nxf3 UTSW X 134,974,732 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- AGGAACCTTAACCTCTGGCATCCG -3'
(R):5'- GGGTCAACACCTACATCCTGTTCAC -3'

Sequencing Primer
(F):5'- AACCTCTGGCATCCGTGATTG -3'
(R):5'- GTCCTACAGTTCCTGAAGCAGTAAG -3'
Posted On 2014-03-14