Mutagenetix > Incidental Mutation

Incidental Mutation 'R0050:H1f8'

16061

Institutional Source

Beutler Lab

Gene Symbol

H1f8

Ensembl Gene

ENSMUSG00000042279

Gene Name

H1.8 linker histone

Synonyms

H1foo, H1-8, H1oo

MMRRC Submission

038344-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0050 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

115921899-115927197 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 115924729 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Asparagine at position 78 (K78N)

Ref Sequence

ENSEMBL: ENSMUSP00000123797 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037831] [ENSMUST00000161617] [ENSMUST00000161969] [ENSMUST00000162084] [ENSMUST00000205177]

AlphaFold

Q8VIK3

Predicted Effect

probably damaging
Transcript: ENSMUST00000037831
AA Change: K78N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000036951
Gene: ENSMUSG00000042279
AA Change: K78N

Domain	Start	End	E-Value	Type
low complexity region	4	24	N/A	INTRINSIC
H15	43	110	8.84e-11	SMART
low complexity region	123	146	N/A	INTRINSIC
low complexity region	182	197	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000161617
AA Change: K78N

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000125701
Gene: ENSMUSG00000042279
AA Change: K78N

Domain	Start	End	E-Value	Type
low complexity region	4	24	N/A	INTRINSIC
H15	43	110	8.84e-11	SMART
low complexity region	123	146	N/A	INTRINSIC
low complexity region	182	197	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000161969
AA Change: K78N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000123797
Gene: ENSMUSG00000042279
AA Change: K78N

Domain	Start	End	E-Value	Type
low complexity region	4	24	N/A	INTRINSIC
H15	43	110	8.84e-11	SMART
low complexity region	123	146	N/A	INTRINSIC
low complexity region	182	197	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000162084

Predicted Effect

probably benign
Transcript: ENSMUST00000205177

SMART Domains

Protein: ENSMUSP00000144958
Gene: ENSMUSG00000042279

Domain	Start	End	E-Value	Type
low complexity region	11	26	N/A	INTRINSIC

Meta Mutation Damage Score

0.1230

Coding Region Coverage

1x: 88.6%
3x: 85.4%
10x: 76.7%
20x: 62.7%

Validation Efficiency

90% (86/96)

MGI Phenotype

FUNCTION: Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. The protein encoded is a replication-independent histone that is a member of the histone H1 family. This gene contains introns, unlike most histone genes and the encoded protein is expressed only in oocytes. [provided by RefSeq, Oct 2015]
PHENOTYPE: Mice homozygous for a targeted mutation exhibit no detectable abnormalities. Oocytes develop normally and no defects in fertility or litter sizes are observed. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca1	A	G	4: 53,069,910 (GRCm39)		probably benign	Het
Abca9	C	T	11: 110,036,417 (GRCm39)	C564Y	probably damaging	Het
Abhd14a	A	T	9: 106,318,082 (GRCm39)		probably benign	Het
Acnat2	G	A	4: 49,380,586 (GRCm39)	T264I	probably benign	Het
Adamts2	T	C	11: 50,666,222 (GRCm39)	V406A	probably damaging	Het
Adcy5	A	G	16: 35,124,673 (GRCm39)		probably benign	Het
Akr1c13	T	C	13: 4,244,669 (GRCm39)		probably benign	Het
Ankar	T	A	1: 72,695,323 (GRCm39)	E1093D	probably damaging	Het
Arhgef38	C	A	3: 132,837,957 (GRCm39)	D75Y	probably damaging	Het
Asns	T	C	6: 7,676,019 (GRCm39)	I484V	probably benign	Het
Astn1	T	C	1: 158,407,294 (GRCm39)		probably benign	Het
Atg4b	T	A	1: 93,715,440 (GRCm39)		probably benign	Het
Cadm2	A	G	16: 66,750,154 (GRCm39)		probably benign	Het
Ces2c	T	A	8: 105,574,831 (GRCm39)	M96K	probably benign	Het
Cpd	T	A	11: 76,683,685 (GRCm39)	T1025S	possibly damaging	Het
Daw1	T	C	1: 83,158,086 (GRCm39)	V45A	probably benign	Het
Dmrt3	C	A	19: 25,599,953 (GRCm39)	P266H	probably damaging	Het
Dnah10	A	G	5: 124,907,808 (GRCm39)	T4416A	probably benign	Het
Dock9	A	G	14: 121,844,637 (GRCm39)	V1124A	probably benign	Het
Ermp1	C	A	19: 29,606,184 (GRCm39)	A190S	probably damaging	Het
Gm10267	T	A	18: 44,289,520 (GRCm39)		probably benign	Het
Golga2	T	A	2: 32,182,139 (GRCm39)	V29D	probably damaging	Het
Gprc6a	T	A	10: 51,491,485 (GRCm39)	M755L	probably damaging	Het
Lama1	A	T	17: 68,089,051 (GRCm39)	D1574V	possibly damaging	Het
Lama3	T	A	18: 12,537,160 (GRCm39)	H268Q	probably damaging	Het
Lmntd1	T	C	6: 145,363,202 (GRCm39)	D107G	probably damaging	Het
Lrriq1	A	G	10: 102,904,792 (GRCm39)	V1614A	probably damaging	Het
Mmp12	A	G	9: 7,350,152 (GRCm39)		probably benign	Het
Mre11a	A	G	9: 14,742,269 (GRCm39)		probably benign	Het
Mtrf1l	T	C	10: 5,765,553 (GRCm39)		silent	Het
Oaz2	A	G	9: 65,595,084 (GRCm39)	E61G	probably damaging	Het
Parp3	A	T	9: 106,348,600 (GRCm39)	D473E	possibly damaging	Het
Pear1	G	T	3: 87,663,294 (GRCm39)	Y441*	probably null	Het
Pkhd1l1	A	T	15: 44,437,203 (GRCm39)	T3493S	possibly damaging	Het
Ppp3cb	A	G	14: 20,581,820 (GRCm39)	V65A	possibly damaging	Het
Rheb	A	T	5: 25,022,832 (GRCm39)		probably benign	Het
Ros1	G	A	10: 51,977,899 (GRCm39)	T1449M	probably damaging	Het
Scn4a	C	G	11: 106,211,682 (GRCm39)	R1445P	probably damaging	Het
Sema3d	T	A	5: 12,634,920 (GRCm39)	M662K	probably benign	Het
Skp2	A	G	15: 9,125,178 (GRCm39)	F134L	probably benign	Het
Slc6a12	T	C	6: 121,337,378 (GRCm39)		probably benign	Het
Slc8a3	T	C	12: 81,362,039 (GRCm39)	Y260C	probably damaging	Het
Spin1	T	A	13: 51,304,454 (GRCm39)		probably benign	Het
Stx2	A	G	5: 129,076,572 (GRCm39)		probably null	Het
Sycp2	A	T	2: 178,006,504 (GRCm39)	V863D	probably damaging	Het
Tgfb3	T	A	12: 86,116,658 (GRCm39)	I127F	possibly damaging	Het
Tgif1	T	G	17: 71,157,879 (GRCm39)	K2Q	probably damaging	Het
Trmt2a	A	T	16: 18,068,707 (GRCm39)	E234D	probably damaging	Het
Trps1	A	T	15: 50,628,921 (GRCm39)	S696T	probably benign	Het
Ucp1	A	G	8: 84,020,857 (GRCm39)	E191G	probably damaging	Het
Usp48	C	A	4: 137,341,114 (GRCm39)	D371E	probably damaging	Het
Usp54	A	T	14: 20,623,823 (GRCm39)		probably benign	Het

Other mutations in H1f8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00334:H1f8	APN	6	115,924,588 (GRCm39)	unclassified	probably benign
IGL00864:H1f8	APN	6	115,925,587 (GRCm39)	missense	probably damaging	0.99
R0050:H1f8	UTSW	6	115,924,729 (GRCm39)	missense	probably damaging	1.00
R0056:H1f8	UTSW	6	115,923,934 (GRCm39)	unclassified	probably benign
R0081:H1f8	UTSW	6	115,926,942 (GRCm39)	missense	probably benign
R0559:H1f8	UTSW	6	115,924,760 (GRCm39)	missense	probably damaging	1.00
R1302:H1f8	UTSW	6	115,924,610 (GRCm39)	nonsense	probably null
R1476:H1f8	UTSW	6	115,924,701 (GRCm39)	missense	possibly damaging	0.61
R1824:H1f8	UTSW	6	115,925,719 (GRCm39)	missense	probably null	0.97
R3778:H1f8	UTSW	6	115,926,708 (GRCm39)	critical splice donor site	probably null
R3928:H1f8	UTSW	6	115,925,757 (GRCm39)	missense	probably benign	0.12
R3929:H1f8	UTSW	6	115,925,757 (GRCm39)	missense	probably benign	0.12
R6316:H1f8	UTSW	6	115,925,876 (GRCm39)	critical splice donor site	probably null
R8356:H1f8	UTSW	6	115,925,745 (GRCm39)	missense	probably benign
R8456:H1f8	UTSW	6	115,925,745 (GRCm39)	missense	probably benign
R8869:H1f8	UTSW	6	115,926,911 (GRCm39)	missense	probably benign	0.00
R9628:H1f8	UTSW	6	115,924,700 (GRCm39)	missense	probably damaging	0.98

Posted On

2013-01-08