Mutagenetix > Incidental Mutation

Incidental Mutation 'R1437:Lrfn2'

161336

Institutional Source

Beutler Lab

Gene Symbol

Lrfn2

Ensembl Gene

ENSMUSG00000040490

Gene Name

leucine rich repeat and fibronectin type III domain containing 2

Synonyms

5730420O05Rik, SALM1

MMRRC Submission

039492-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1437 (G1)

Quality Score

155

Status

Not validated

Chromosome

Chromosomal Location

49239407-49404616 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 49378253 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 445 (S445P)

Ref Sequence

ENSEMBL: ENSMUSP00000047573 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000046254]

AlphaFold

Q80TG9

Predicted Effect

probably damaging
Transcript: ENSMUST00000046254
AA Change: S445P

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000047573
Gene: ENSMUSG00000040490
AA Change: S445P

Domain	Start	End	E-Value	Type
low complexity region	4	16	N/A	INTRINSIC
LRRNT	20	56	2.9e0	SMART
LRR	75	98	7.36e0	SMART
LRR_TYP	99	122	1.1e-2	SMART
LRR_TYP	123	146	2.2e-2	SMART
LRR	148	171	4.45e1	SMART
LRR_TYP	172	195	1.56e-2	SMART
LRR	196	220	1.06e1	SMART
LRRCT	242	287	5.53e-4	SMART
IGc2	301	366	8e-12	SMART
low complexity region	401	415	N/A	INTRINSIC
FN3	420	500	1.52e-1	SMART
transmembrane domain	533	555	N/A	INTRINSIC
low complexity region	613	654	N/A	INTRINSIC

Coding Region Coverage

1x: 98.9%
3x: 97.9%
10x: 94.7%
20x: 87.3%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit small spleens, small or no thymi, impaired T cell development, and decreased T cell proliferation in response to mitogen. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1b	T	A	5: 8,871,436 (GRCm39)	V330E	possibly damaging	Het
Abcb5	A	G	12: 118,838,497 (GRCm39)	S1022P	probably damaging	Het
Abcc8	A	G	7: 45,829,237 (GRCm39)	I46T	probably damaging	Het
Add3	A	G	19: 53,222,109 (GRCm39)	R275G	probably damaging	Het
Akap1	C	A	11: 88,735,577 (GRCm39)	G362*	probably null	Het
Arhgef4	A	G	1: 34,763,026 (GRCm39)	T761A	unknown	Het
Asap1	A	T	15: 63,991,956 (GRCm39)	L751Q	probably damaging	Het
Atg2a	C	A	19: 6,300,646 (GRCm39)	P741H	probably damaging	Het
Atxn10	T	C	15: 85,243,675 (GRCm39)	I46T	possibly damaging	Het
BC049715	C	A	6: 136,817,090 (GRCm39)	A110E	probably damaging	Het
Bltp1	C	A	3: 36,996,578 (GRCm39)	H1097N	possibly damaging	Het
Btbd7	T	A	12: 102,754,349 (GRCm39)	T806S	possibly damaging	Het
Cdk4	C	A	10: 126,900,558 (GRCm39)	P108H	probably damaging	Het
Cep290	A	G	10: 100,407,963 (GRCm39)	T2391A	probably benign	Het
Col6a3	G	T	1: 90,729,098 (GRCm39)	A1281E	probably damaging	Het
Cpa5	A	T	6: 30,624,654 (GRCm39)	I165F	probably damaging	Het
Ctdp1	G	T	18: 80,493,428 (GRCm39)	Q356K	probably benign	Het
Ddx21	A	G	10: 62,434,369 (GRCm39)	M130T	unknown	Het
Epha5	T	G	5: 84,381,555 (GRCm39)	D432A	probably damaging	Het
Esr1	ACGCCGCCGCCGCCGCCGCCGCCGCCGCC	ACGCCGCCGCCGCCGCCGCCGCCGCC	10: 4,662,571 (GRCm39)		probably benign	Het
Fads2	A	T	19: 10,069,193 (GRCm39)	L77Q	probably benign	Het
Fbn2	A	T	18: 58,186,731 (GRCm39)	H1723Q	possibly damaging	Het
Fbxo42	C	T	4: 140,895,165 (GRCm39)	H43Y	probably benign	Het
Fry	A	G	5: 150,233,890 (GRCm39)	T121A	possibly damaging	Het
Gpr156	T	G	16: 37,808,904 (GRCm39)	S209A	probably damaging	Het
Hey2	T	C	10: 30,709,845 (GRCm39)	T303A	probably benign	Het
Hivep1	T	A	13: 42,310,616 (GRCm39)	M952K	probably benign	Het
Hydin	C	T	8: 111,308,617 (GRCm39)	Q3968*	probably null	Het
Jup	T	C	11: 100,274,402 (GRCm39)	E96G	probably benign	Het
Kcnn1	A	G	8: 71,297,195 (GRCm39)	I504T	probably benign	Het
Klk1b9	T	C	7: 43,629,114 (GRCm39)	V174A	probably damaging	Het
Lama3	G	C	18: 12,682,284 (GRCm39)	M1083I	possibly damaging	Het
Lcmt2	A	G	2: 120,969,377 (GRCm39)	S569P	probably benign	Het
Lrp3	C	A	7: 34,912,595 (GRCm39)	G31W	probably damaging	Het
Lrrc8b	T	C	5: 105,629,568 (GRCm39)	L638P	probably damaging	Het
Mief2	C	T	11: 60,621,769 (GRCm39)	T113M	probably benign	Het
Mrps2	T	C	2: 28,358,899 (GRCm39)	F76S	probably damaging	Het
Naca	A	G	10: 127,878,048 (GRCm39)		probably benign	Het
Ndst4	C	A	3: 125,355,099 (GRCm39)	R336S	probably damaging	Het
Nr1i3	CACTCAACACTAC	CAC	1: 171,044,710 (GRCm39)		probably null	Het
Nr5a1	T	A	2: 38,600,685 (GRCm39)	T29S	probably benign	Het
Or5ak23	T	C	2: 85,245,218 (GRCm39)	I2V	probably benign	Het
Or5as1	C	T	2: 86,980,115 (GRCm39)	V297M	possibly damaging	Het
Pald1	A	G	10: 61,177,064 (GRCm39)	F662S	possibly damaging	Het
Pdcd4	G	T	19: 53,897,674 (GRCm39)	A59S	probably damaging	Het
Pde4a	T	C	9: 21,103,888 (GRCm39)		probably null	Het
Pkd1	T	A	17: 24,814,106 (GRCm39)	S4159T	probably damaging	Het
Plaat1	C	A	16: 29,046,922 (GRCm39)	A147E	possibly damaging	Het
Plch1	C	A	3: 63,604,954 (GRCm39)	R1641L	probably benign	Het
Plec	G	T	15: 76,073,481 (GRCm39)	P308Q	probably damaging	Het
Pnkp	A	G	7: 44,509,826 (GRCm39)	S262G	possibly damaging	Het
Pou2f1	A	G	1: 165,719,399 (GRCm39)	V504A	probably damaging	Het
Prepl	G	A	17: 85,395,785 (GRCm39)	R66W	probably damaging	Het
Rasgrf2	T	C	13: 92,167,396 (GRCm39)	K226E	probably damaging	Het
Ror1	T	A	4: 100,269,306 (GRCm39)	F381L	probably benign	Het
Sbsn	C	T	7: 30,452,478 (GRCm39)	Q498*	probably null	Het
Scgb2b19	T	C	7: 32,977,980 (GRCm39)	I106V	probably benign	Het
Sf3a2	G	A	10: 80,640,040 (GRCm39)		probably benign	Het
Sis	T	C	3: 72,841,475 (GRCm39)	H780R	probably damaging	Het
Slc28a3	G	T	13: 58,706,389 (GRCm39)	C617*	probably null	Het
Slc44a1	T	A	4: 53,561,006 (GRCm39)	V574D	probably damaging	Het
Slc8a3	T	A	12: 81,362,760 (GRCm39)	T20S	probably damaging	Het
Stt3b	T	A	9: 115,083,995 (GRCm39)	I394F	probably damaging	Het
Ubap1l	T	A	9: 65,279,337 (GRCm39)	V212D	possibly damaging	Het
Ugt2b35	T	C	5: 87,148,890 (GRCm39)	V47A	probably benign	Het
Vmn2r114	A	G	17: 23,510,185 (GRCm39)	F765S	probably damaging	Het
Vps50	C	T	6: 3,517,852 (GRCm39)	Q97*	probably null	Het
Vsig10	A	G	5: 117,489,635 (GRCm39)	Q467R	probably damaging	Het
Wdsub1	T	G	2: 59,708,477 (GRCm39)	Y11S	probably damaging	Het
Zbtb11	T	G	16: 55,811,983 (GRCm39)		probably null	Het

Other mutations in Lrfn2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01612:Lrfn2	APN	17	49,377,425 (GRCm39)	missense	possibly damaging	0.81
IGL01989:Lrfn2	APN	17	49,378,113 (GRCm39)	missense	probably damaging	1.00
IGL03324:Lrfn2	APN	17	49,377,915 (GRCm39)	missense	probably damaging	1.00
IGL02991:Lrfn2	UTSW	17	49,377,732 (GRCm39)	missense	probably damaging	1.00
R0306:Lrfn2	UTSW	17	49,403,283 (GRCm39)	missense	probably damaging	0.99
R0539:Lrfn2	UTSW	17	49,378,072 (GRCm39)	missense	probably damaging	1.00
R1245:Lrfn2	UTSW	17	49,403,277 (GRCm39)	critical splice acceptor site	probably null
R1414:Lrfn2	UTSW	17	49,377,857 (GRCm39)	missense	probably benign	0.01
R1670:Lrfn2	UTSW	17	49,403,605 (GRCm39)	missense	probably benign	0.01
R2358:Lrfn2	UTSW	17	49,378,188 (GRCm39)	missense	possibly damaging	0.92
R3711:Lrfn2	UTSW	17	49,378,188 (GRCm39)	missense	possibly damaging	0.92
R3712:Lrfn2	UTSW	17	49,378,188 (GRCm39)	missense	possibly damaging	0.92
R4521:Lrfn2	UTSW	17	49,376,922 (GRCm39)	start codon destroyed	probably null	0.02
R4532:Lrfn2	UTSW	17	49,377,564 (GRCm39)	missense	probably damaging	1.00
R4724:Lrfn2	UTSW	17	49,377,462 (GRCm39)	missense	probably damaging	1.00
R5062:Lrfn2	UTSW	17	49,377,528 (GRCm39)	missense	probably damaging	1.00
R5066:Lrfn2	UTSW	17	49,403,448 (GRCm39)	missense	probably damaging	1.00
R5348:Lrfn2	UTSW	17	49,403,718 (GRCm39)	missense	probably benign
R5673:Lrfn2	UTSW	17	49,403,625 (GRCm39)	missense	probably benign	0.02
R5900:Lrfn2	UTSW	17	49,377,291 (GRCm39)	missense	possibly damaging	0.82
R6014:Lrfn2	UTSW	17	49,376,934 (GRCm39)	missense	possibly damaging	0.96
R6087:Lrfn2	UTSW	17	49,378,154 (GRCm39)	missense	probably benign
R6224:Lrfn2	UTSW	17	49,403,379 (GRCm39)	missense	probably damaging	1.00
R6229:Lrfn2	UTSW	17	49,404,160 (GRCm39)	missense	possibly damaging	0.88
R6342:Lrfn2	UTSW	17	49,404,028 (GRCm39)	missense	probably benign	0.27
R6408:Lrfn2	UTSW	17	49,377,654 (GRCm39)	missense	probably damaging	1.00
R7026:Lrfn2	UTSW	17	49,404,005 (GRCm39)	missense	probably benign	0.00
R7505:Lrfn2	UTSW	17	49,403,479 (GRCm39)	missense	probably benign	0.14
R7852:Lrfn2	UTSW	17	49,376,972 (GRCm39)	missense	possibly damaging	0.69
R7918:Lrfn2	UTSW	17	49,378,212 (GRCm39)	missense	probably damaging	0.99
R8375:Lrfn2	UTSW	17	49,403,851 (GRCm39)	missense	possibly damaging	0.73
R8733:Lrfn2	UTSW	17	49,403,824 (GRCm39)	missense	probably damaging	0.96
R8828:Lrfn2	UTSW	17	49,404,132 (GRCm39)	missense	probably damaging	1.00
R8872:Lrfn2	UTSW	17	49,378,277 (GRCm39)	nonsense	probably null
R8892:Lrfn2	UTSW	17	49,377,376 (GRCm39)	missense	probably damaging	1.00
R9135:Lrfn2	UTSW	17	49,376,976 (GRCm39)	missense	possibly damaging	0.95
R9358:Lrfn2	UTSW	17	49,403,530 (GRCm39)	missense	probably damaging	0.99
R9661:Lrfn2	UTSW	17	49,403,650 (GRCm39)	missense	probably benign
Z1177:Lrfn2	UTSW	17	49,403,743 (GRCm39)	missense	probably damaging	0.99
Z1177:Lrfn2	UTSW	17	49,377,123 (GRCm39)	missense	probably benign	0.03
Z1177:Lrfn2	UTSW	17	49,377,040 (GRCm39)	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- AAGTCTCGCCTTTCGGACATCAC -3'
(R):5'- AATGGCTCAGCCCTAATTCTGCTC -3'

Sequencing Primer
(F):5'- TTCGGACATCACAGGTTCCAG -3'
(R):5'- Tacacacacacacacacacac -3'

Posted On

2014-03-14