Incidental Mutation 'R1428:Ifi27l2a'
ID161405
Institutional Source Beutler Lab
Gene Symbol Ifi27l2a
Ensembl Gene ENSMUSG00000079017
Gene Nameinterferon, alpha-inducible protein 27 like 2A
Synonyms2310061N23Rik, Ifi27
MMRRC Submission 039484-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R1428 (G1)
Quality Score225
Status Validated
Chromosome12
Chromosomal Location103442167-103443680 bp(-) (GRCm38)
Type of Mutationunclassified
DNA Base Change (assembly) G to T at 103442834 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000082142 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000055071] [ENSMUST00000066701] [ENSMUST00000076702] [ENSMUST00000076788] [ENSMUST00000079294] [ENSMUST00000085065]
Predicted Effect unknown
Transcript: ENSMUST00000055071
AA Change: A66E
SMART Domains Protein: ENSMUSP00000054698
Gene: ENSMUSG00000079017
AA Change: A66E

DomainStartEndE-ValueType
Pfam:Ifi-6-16 10 88 4.1e-31 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000066701
SMART Domains Protein: ENSMUSP00000068729
Gene: ENSMUSG00000064215

DomainStartEndE-ValueType
transmembrane domain 21 43 N/A INTRINSIC
transmembrane domain 53 75 N/A INTRINSIC
Pfam:Ifi-6-16 85 167 2.6e-33 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000076702
SMART Domains Protein: ENSMUSP00000075994
Gene: ENSMUSG00000064215

DomainStartEndE-ValueType
low complexity region 43 59 N/A INTRINSIC
Pfam:Ifi-6-16 73 157 7.1e-32 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000076788
SMART Domains Protein: ENSMUSP00000076068
Gene: ENSMUSG00000064215

DomainStartEndE-ValueType
Pfam:Ifi-6-16 35 117 7.2e-32 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000079294
SMART Domains Protein: ENSMUSP00000078275
Gene: ENSMUSG00000064215

DomainStartEndE-ValueType
low complexity region 43 59 N/A INTRINSIC
Pfam:Ifi-6-16 122 202 8e-33 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000085065
SMART Domains Protein: ENSMUSP00000082142
Gene: ENSMUSG00000064215

DomainStartEndE-ValueType
low complexity region 43 59 N/A INTRINSIC
Pfam:Ifi-6-16 132 210 1.8e-29 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000153670
Meta Mutation Damage Score 0.0608 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.0%
  • 10x: 95.5%
  • 20x: 90.2%
Validation Efficiency 98% (56/57)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal susceptibility to infection with H1N1 or H7N7 influenza A virus, although sloughing of dead cells into bronchiolar lumen persists somewhat longer after infection than in infected controls. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 49 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700034J05Rik T C 6: 146,952,411 I249M possibly damaging Het
2410089E03Rik T A 15: 8,219,369 Y1801N possibly damaging Het
Abl1 G T 2: 31,801,810 A1114S probably damaging Het
Acbd5 T C 2: 23,099,721 V452A probably damaging Het
Armc12 A G 17: 28,537,936 D225G probably damaging Het
Atad3a T A 4: 155,755,682 Q121H probably damaging Het
Bptf T A 11: 107,073,047 I1711F probably damaging Het
C2cd4c A T 10: 79,612,230 I361N probably damaging Het
Canx A G 11: 50,308,394 probably benign Het
Ccdc127 C T 13: 74,356,915 T194I probably benign Het
Cdc42ep3 T C 17: 79,335,036 K152E probably benign Het
Cdh15 G C 8: 122,857,495 E112Q probably damaging Het
Cnbd2 T C 2: 156,339,284 probably null Het
Crybg1 T C 10: 43,975,078 N1599S probably benign Het
Cyc1 T C 15: 76,344,348 V59A probably benign Het
Cyp2j11 T C 4: 96,294,880 K484E probably benign Het
Ddx60 T C 8: 61,958,159 probably benign Het
Epg5 T C 18: 77,962,427 S711P probably damaging Het
Espl1 A T 15: 102,305,685 Q649L probably benign Het
Eya1 G A 1: 14,304,414 probably benign Het
Fam214a A T 9: 75,006,321 T79S probably benign Het
Fam71e2 T A 7: 4,757,688 H675L possibly damaging Het
Fat2 T A 11: 55,296,087 Y1311F probably damaging Het
Gins4 T C 8: 23,227,128 Y208C probably damaging Het
Gsk3b T C 16: 38,090,575 V17A probably benign Het
Gykl1 A T 18: 52,694,761 K347I probably benign Het
Helz T A 11: 107,592,840 probably benign Het
Hivep3 C T 4: 120,096,575 T696I possibly damaging Het
Kif13a A G 13: 46,791,511 probably benign Het
Kpna3 C T 14: 61,383,220 probably benign Het
Mmp15 C G 8: 95,369,562 P327R probably benign Het
Mrc1 A T 2: 14,315,263 T1003S probably benign Het
Mtss1 T C 15: 58,947,390 D393G probably benign Het
Olfm4 T A 14: 80,021,403 Y331N probably damaging Het
Olfr1255 G C 2: 89,816,381 L12F probably damaging Het
Olfr517 T A 7: 108,868,960 N65Y probably damaging Het
P2rx3 G C 2: 85,024,950 T54R possibly damaging Het
Pacsin1 C T 17: 27,705,963 T217I probably damaging Het
Phlpp1 A G 1: 106,380,425 probably null Het
Pknox1 T C 17: 31,592,092 probably benign Het
Plb1 A G 5: 32,264,912 R70G possibly damaging Het
Rab3gap2 G A 1: 185,247,904 A340T probably damaging Het
Rnf103 T A 6: 71,508,999 W205R probably damaging Het
Rps6kc1 G A 1: 190,798,726 T936M probably damaging Het
Spef2 T C 15: 9,596,707 probably benign Het
Sstr4 A G 2: 148,396,359 S297G probably benign Het
Timm8a1 C T X: 134,538,123 E93K probably benign Het
Uck1 A C 2: 32,258,355 Y150D probably damaging Het
Yipf4 A G 17: 74,498,305 probably benign Het
Other mutations in Ifi27l2a
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0924:Ifi27l2a UTSW 12 103442380 missense probably damaging 0.99
R6883:Ifi27l2a UTSW 12 103443497 unclassified probably benign
Predicted Primers PCR Primer
(F):5'- AGTGACCTGATGCTCAGAGATGCC -3'
(R):5'- GTCCCCAGAAACAGTCAGGGAATTG -3'

Sequencing Primer
(F):5'- GAGATGCTCTCTCTATAGCAGGAC -3'
(R):5'- GTGGGTCATTTCCCTGAGCC -3'
Posted On2014-03-14