Incidental Mutation 'R1426:Xpc'
| ID |
162246 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Xpc
|
| Ensembl Gene |
ENSMUSG00000030094 |
| Gene Name |
xeroderma pigmentosum, complementation group C |
| Synonyms |
|
| MMRRC Submission |
039482-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.330)
|
| Stock # |
R1426 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
6 |
| Chromosomal Location |
91466287-91492870 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 91470220 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Threonine
at position 699
(M699T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000032182
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032182]
[ENSMUST00000032183]
|
| AlphaFold |
P51612 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000032182
AA Change: M699T
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000032182
Gene: ENSMUSG00000030094
AA Change: M699T
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
69 |
82 |
N/A |
INTRINSIC |
|
low complexity region
|
106 |
115 |
N/A |
INTRINSIC |
|
low complexity region
|
118 |
142 |
N/A |
INTRINSIC |
|
low complexity region
|
299 |
315 |
N/A |
INTRINSIC |
|
low complexity region
|
335 |
352 |
N/A |
INTRINSIC |
|
low complexity region
|
371 |
387 |
N/A |
INTRINSIC |
|
low complexity region
|
425 |
439 |
N/A |
INTRINSIC |
|
Pfam:Rad4
|
485 |
619 |
6.4e-26 |
PFAM |
|
BHD_1
|
623 |
675 |
4.09e-25 |
SMART |
|
BHD_2
|
677 |
737 |
4.96e-24 |
SMART |
|
BHD_3
|
744 |
818 |
4.83e-45 |
SMART |
|
low complexity region
|
826 |
835 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000032183
|
| SMART Domains |
Protein: ENSMUSP00000032183
Gene: ENSMUSG00000030095
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
32 |
51 |
N/A |
INTRINSIC |
|
Pfam:DUF1625
|
121 |
373 |
3.6e-88 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000150279
|
| Meta Mutation Damage Score |
0.5446 |
| Coding Region Coverage |
- 1x: 98.8%
- 3x: 97.7%
- 10x: 94.3%
- 20x: 86.1%
|
| Validation Efficiency |
100% (40/40) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a component of the nucleotide excision repair (NER) pathway. There are multiple components involved in the NER pathway, including Xeroderma pigmentosum (XP) A-G and V, Cockayne syndrome (CS) A and B, and trichothiodystrophy (TTD) group A, etc. This component, XPC, plays an important role in the early steps of global genome NER, especially in damage recognition, open complex formation, and repair protein complex formation. Mutations in this gene or some other NER components result in Xeroderma pigmentosum, a rare autosomal recessive disorder characterized by increased sensitivity to sunlight with the development of carcinomas at an early age. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2009]
PHENOTYPE: Homozygous mutants are highly susceptible to ultraviolet-induced skin tumors and exhibit a 30-fold higher somatic frequency of gene mutations at one year of age. Mutant cells exhibit impaired nucleotide excision repair. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcc10 |
A |
T |
17: 46,635,361 (GRCm39) |
V214E |
probably damaging |
Het |
| Adh1 |
A |
G |
3: 137,992,556 (GRCm39) |
D224G |
probably damaging |
Het |
| Arhgap28 |
C |
A |
17: 68,164,459 (GRCm39) |
Q554H |
probably damaging |
Het |
| Atp8a2 |
T |
C |
14: 60,097,719 (GRCm39) |
K770E |
probably benign |
Het |
| Brat1 |
G |
A |
5: 140,703,768 (GRCm39) |
V674I |
probably benign |
Het |
| Brd2 |
ATCTTCTTC |
ATCTTC |
17: 34,332,981 (GRCm39) |
|
probably benign |
Het |
| Ccdc162 |
T |
C |
10: 41,429,178 (GRCm39) |
D438G |
possibly damaging |
Het |
| Cyp4x1 |
T |
A |
4: 114,969,988 (GRCm39) |
|
probably benign |
Het |
| Dip2a |
T |
C |
10: 76,115,654 (GRCm39) |
|
probably benign |
Het |
| Eif2s1 |
A |
G |
12: 78,927,942 (GRCm39) |
D206G |
probably benign |
Het |
| Elovl7 |
T |
A |
13: 108,419,028 (GRCm39) |
I220N |
possibly damaging |
Het |
| Gsto1 |
A |
G |
19: 47,846,381 (GRCm39) |
E76G |
probably damaging |
Het |
| Hspa14 |
A |
T |
2: 3,509,858 (GRCm39) |
W12R |
probably damaging |
Het |
| L3mbtl2 |
T |
A |
15: 81,560,518 (GRCm39) |
C260S |
possibly damaging |
Het |
| Lama3 |
G |
T |
18: 12,614,155 (GRCm39) |
|
probably null |
Het |
| Lrrc34 |
T |
A |
3: 30,697,728 (GRCm39) |
|
probably benign |
Het |
| Lrrc45 |
A |
T |
11: 120,610,839 (GRCm39) |
Q525L |
probably benign |
Het |
| Lss |
T |
C |
10: 76,372,137 (GRCm39) |
I164T |
probably damaging |
Het |
| Myh11 |
T |
A |
16: 14,023,795 (GRCm39) |
K1527* |
probably null |
Het |
| Naip2 |
T |
C |
13: 100,298,362 (GRCm39) |
E558G |
probably benign |
Het |
| Naip2 |
C |
T |
13: 100,298,368 (GRCm39) |
G556D |
probably benign |
Het |
| Ncoa1 |
T |
A |
12: 4,320,737 (GRCm39) |
|
probably benign |
Het |
| Or5an1c |
G |
T |
19: 12,218,546 (GRCm39) |
Q160K |
possibly damaging |
Het |
| Or6c38 |
A |
T |
10: 128,929,559 (GRCm39) |
C95S |
probably damaging |
Het |
| Pafah1b3 |
T |
C |
7: 24,996,560 (GRCm39) |
E41G |
possibly damaging |
Het |
| Pnma8a |
C |
T |
7: 16,694,909 (GRCm39) |
P255S |
possibly damaging |
Het |
| Prkar2b |
A |
T |
12: 32,012,987 (GRCm39) |
|
probably benign |
Het |
| Rbck1 |
A |
T |
2: 152,169,161 (GRCm39) |
|
probably benign |
Het |
| Rcor2 |
A |
G |
19: 7,248,395 (GRCm39) |
S137G |
possibly damaging |
Het |
| Slc25a48 |
T |
A |
13: 56,596,804 (GRCm39) |
|
probably benign |
Het |
| Slc7a4 |
A |
G |
16: 17,391,808 (GRCm39) |
|
probably null |
Het |
| Tert |
T |
C |
13: 73,790,472 (GRCm39) |
|
probably benign |
Het |
| Traf7 |
A |
T |
17: 24,730,655 (GRCm39) |
I344N |
probably damaging |
Het |
| Vmn1r194 |
T |
A |
13: 22,429,236 (GRCm39) |
F284L |
probably damaging |
Het |
| Zbtb5 |
T |
C |
4: 44,993,968 (GRCm39) |
H472R |
possibly damaging |
Het |
| Zfp786 |
A |
G |
6: 47,802,013 (GRCm39) |
V88A |
probably benign |
Het |
| Zkscan7 |
T |
C |
9: 122,724,228 (GRCm39) |
I399T |
probably benign |
Het |
| Zyg11b |
G |
A |
4: 108,108,009 (GRCm39) |
R466C |
probably damaging |
Het |
|
| Other mutations in Xpc |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00157:Xpc
|
APN |
6 |
91,469,246 (GRCm39) |
unclassified |
probably benign |
|
|
IGL01108:Xpc
|
APN |
6 |
91,469,987 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01310:Xpc
|
APN |
6 |
91,467,089 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL01323:Xpc
|
APN |
6 |
91,469,335 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01350:Xpc
|
APN |
6 |
91,476,993 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01656:Xpc
|
APN |
6 |
91,482,449 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL01922:Xpc
|
APN |
6 |
91,482,407 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02412:Xpc
|
APN |
6 |
91,476,767 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02448:Xpc
|
APN |
6 |
91,492,726 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02571:Xpc
|
APN |
6 |
91,481,053 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02937:Xpc
|
APN |
6 |
91,477,119 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02951:Xpc
|
APN |
6 |
91,483,831 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03033:Xpc
|
APN |
6 |
91,468,297 (GRCm39) |
splice site |
probably null |
|
|
IGL03248:Xpc
|
APN |
6 |
91,481,565 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03046:Xpc
|
UTSW |
6 |
91,487,463 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0031:Xpc
|
UTSW |
6 |
91,468,208 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0173:Xpc
|
UTSW |
6 |
91,481,717 (GRCm39) |
unclassified |
probably benign |
|
|
R0285:Xpc
|
UTSW |
6 |
91,475,046 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0454:Xpc
|
UTSW |
6 |
91,468,208 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0535:Xpc
|
UTSW |
6 |
91,481,560 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R0554:Xpc
|
UTSW |
6 |
91,468,208 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0759:Xpc
|
UTSW |
6 |
91,475,124 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1478:Xpc
|
UTSW |
6 |
91,485,510 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R1676:Xpc
|
UTSW |
6 |
91,469,929 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R1969:Xpc
|
UTSW |
6 |
91,478,007 (GRCm39) |
splice site |
probably null |
|
|
R2138:Xpc
|
UTSW |
6 |
91,475,104 (GRCm39) |
nonsense |
probably null |
|
|
R2237:Xpc
|
UTSW |
6 |
91,475,090 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4580:Xpc
|
UTSW |
6 |
91,476,993 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5318:Xpc
|
UTSW |
6 |
91,469,992 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5567:Xpc
|
UTSW |
6 |
91,475,117 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5681:Xpc
|
UTSW |
6 |
91,481,102 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6022:Xpc
|
UTSW |
6 |
91,476,618 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R6791:Xpc
|
UTSW |
6 |
91,483,839 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6794:Xpc
|
UTSW |
6 |
91,483,839 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6983:Xpc
|
UTSW |
6 |
91,481,005 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7214:Xpc
|
UTSW |
6 |
91,469,320 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7442:Xpc
|
UTSW |
6 |
91,481,631 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7524:Xpc
|
UTSW |
6 |
91,476,513 (GRCm39) |
missense |
probably benign |
0.23 |
|
R7581:Xpc
|
UTSW |
6 |
91,474,999 (GRCm39) |
splice site |
probably benign |
|
|
R8002:Xpc
|
UTSW |
6 |
91,469,287 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8992:Xpc
|
UTSW |
6 |
91,477,956 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGTACACGTTCCCAAACTCATTCCG -3'
(R):5'- GAGCAAAGGTCTGCTTCACCTCTC -3'
Sequencing Primer
(F):5'- AGcccactctgaccccc -3'
(R):5'- gtctgcttcaCCTCTCTCACAG -3'
|
| Posted On |
2014-03-14 |
Incidental Mutation