Mutagenetix > Incidental Mutation

Incidental Mutation 'R1490:Samd7'

163637

Institutional Source

Beutler Lab

Gene Symbol

Samd7

Ensembl Gene

ENSMUSG00000051860

Gene Name

sterile alpha motif domain containing 7

Synonyms

4930597A01Rik

MMRRC Submission

039542-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.122) question?

Stock #

R1490 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

30800481-30821323 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 30812502 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 314 (E314G)

Ref Sequence

ENSEMBL: ENSMUSP00000103897 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108262] [ENSMUST00000172593] [ENSMUST00000174395]

AlphaFold

Q8C8Y5

Predicted Effect

probably benign
Transcript: ENSMUST00000108262
AA Change: E314G

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000103897
Gene: ENSMUSG00000051860
AA Change: E314G

Domain	Start	End	E-Value	Type
SAM	321	388	2.12e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000172593

Predicted Effect

probably benign
Transcript: ENSMUST00000174395

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192872

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous knockout reduces the sensitivity of the retinal rods to low-to-moderate flash luminescence. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldh1l2	G	A	10: 83,356,234 (GRCm39)	T52I	probably damaging	Het
Arhgef28	G	A	13: 98,114,952 (GRCm39)	R633W	probably damaging	Het
Atg9a	T	C	1: 75,162,389 (GRCm39)	N507S	possibly damaging	Het
Bsn	A	G	9: 107,991,193 (GRCm39)	S1520P	probably benign	Het
Cacul1	G	T	19: 60,568,837 (GRCm39)	A107E	probably damaging	Het
Cd74	A	G	18: 60,944,438 (GRCm39)	D216G	probably damaging	Het
Cdh16	A	T	8: 105,348,702 (GRCm39)	W109R	probably damaging	Het
Cdip1	C	T	16: 4,586,775 (GRCm39)	V100I	probably damaging	Het
Ceacam3	A	G	7: 16,897,071 (GRCm39)	D679G	probably damaging	Het
Comp	A	G	8: 70,826,563 (GRCm39)	D46G	possibly damaging	Het
Dlx3	T	C	11: 95,011,430 (GRCm39)	Y95H	probably benign	Het
Dmrta2	T	C	4: 109,837,072 (GRCm39)	S5P	unknown	Het
E130308A19Rik	A	G	4: 59,719,746 (GRCm39)	Y426C	probably damaging	Het
Entpd3	A	G	9: 120,383,225 (GRCm39)	S87G	probably benign	Het
Eps8l1	A	G	7: 4,473,888 (GRCm39)	R232G	probably damaging	Het
Gart	A	T	16: 91,421,232 (GRCm39)	V812D	probably damaging	Het
Gm10153	C	T	7: 141,743,879 (GRCm39)	C83Y	unknown	Het
Gpd2	T	C	2: 57,245,487 (GRCm39)	V394A	probably damaging	Het
Hpcal1	A	T	12: 17,836,225 (GRCm39)	E18D	probably benign	Het
Mdga2	T	C	12: 66,844,530 (GRCm39)	D156G	probably benign	Het
Mks1	A	G	11: 87,753,595 (GRCm39)	K510E	probably benign	Het
Ms4a19	A	G	19: 11,118,902 (GRCm39)	I69T	probably benign	Het
Mtmr4	G	A	11: 87,503,051 (GRCm39)	R1035Q	probably damaging	Het
Myh6	T	A	14: 55,200,175 (GRCm39)	K235*	probably null	Het
Nedd1	A	G	10: 92,536,660 (GRCm39)	F214S	probably damaging	Het
Or1e32	A	G	11: 73,705,197 (GRCm39)	V237A	possibly damaging	Het
Or1o3	A	G	17: 37,573,733 (GRCm39)	M274T	probably benign	Het
Or2l13	T	C	16: 19,305,672 (GRCm39)	M28T	probably benign	Het
Or52e15	A	G	7: 104,645,700 (GRCm39)	I137T	possibly damaging	Het
Pfkfb2	A	C	1: 130,625,626 (GRCm39)		probably null	Het
Pfkfb4	T	C	9: 108,856,688 (GRCm39)	L398P	probably damaging	Het
Pfn3	T	G	13: 55,562,732 (GRCm39)	D83A	probably damaging	Het
Pi4ka	C	A	16: 17,204,132 (GRCm39)	W54L	probably damaging	Het
Ppp3r1	A	G	11: 17,148,275 (GRCm39)	D161G	probably benign	Het
Prrc2a	A	G	17: 35,372,230 (GRCm39)	S1757P	probably benign	Het
Slc17a4	A	G	13: 24,088,736 (GRCm39)	I217T	probably benign	Het
Slc22a1	A	T	17: 12,881,780 (GRCm39)		probably null	Het
Slc7a7	C	T	14: 54,646,103 (GRCm39)	R120H	probably damaging	Het
Sos1	A	T	17: 80,721,104 (GRCm39)	H905Q	probably benign	Het
Thada	G	A	17: 84,754,029 (GRCm39)	T314I	possibly damaging	Het
Tirap	ACTGCTGCTGCTGCTGCTG	ACTGCTGCTGCTGCTG	9: 35,100,362 (GRCm39)		probably benign	Het
Tlr11	A	C	14: 50,600,633 (GRCm39)	H873P	probably benign	Het
Tlr4	A	T	4: 66,757,611 (GRCm39)	T135S	possibly damaging	Het
Tmem116	T	C	5: 121,633,174 (GRCm39)	S183P	probably damaging	Het
Tubgcp3	A	T	8: 12,689,550 (GRCm39)	I572K	probably damaging	Het
Ugcg	C	T	4: 59,207,798 (GRCm39)	P46S	probably benign	Het
Ush2a	C	T	1: 188,092,038 (GRCm39)	T523I	probably benign	Het
Usp40	G	A	1: 87,916,687 (GRCm39)	Q364*	probably null	Het
Vmn1r61	T	C	7: 5,614,242 (GRCm39)	Q24R	probably benign	Het
Wdfy4	C	A	14: 32,874,495 (GRCm39)		probably null	Het
Zfp458	G	A	13: 67,405,573 (GRCm39)	P286S	probably damaging	Het
Zfp68	A	T	5: 138,605,091 (GRCm39)	C373S	probably benign	Het
Zfp768	T	A	7: 126,942,803 (GRCm39)	I442F	probably damaging	Het
Zfp990	A	G	4: 145,263,853 (GRCm39)	R284G	probably benign	Het

Other mutations in Samd7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01550:Samd7	APN	3	30,819,399 (GRCm39)	missense	probably damaging	1.00
IGL01813:Samd7	APN	3	30,808,435 (GRCm39)	missense	probably benign	0.00
IGL02884:Samd7	APN	3	30,810,322 (GRCm39)	missense	probably damaging	1.00
IGL03018:Samd7	APN	3	30,816,294 (GRCm39)	missense	probably damaging	1.00
IGL03263:Samd7	APN	3	30,816,302 (GRCm39)	missense	probably damaging	1.00
R0244:Samd7	UTSW	3	30,805,222 (GRCm39)	missense	probably benign	0.41
R0638:Samd7	UTSW	3	30,810,670 (GRCm39)	missense	probably benign	0.01
R2099:Samd7	UTSW	3	30,810,709 (GRCm39)	missense	probably benign	0.00
R3725:Samd7	UTSW	3	30,805,283 (GRCm39)	missense	possibly damaging	0.46
R5557:Samd7	UTSW	3	30,810,769 (GRCm39)	missense	probably benign	0.21
R5899:Samd7	UTSW	3	30,810,883 (GRCm39)	missense	probably benign	0.00
R6088:Samd7	UTSW	3	30,810,632 (GRCm39)	missense	probably benign	0.00
R6985:Samd7	UTSW	3	30,805,272 (GRCm39)	missense	probably benign	0.02
R7066:Samd7	UTSW	3	30,805,272 (GRCm39)	missense	probably benign	0.02
R7067:Samd7	UTSW	3	30,805,272 (GRCm39)	missense	probably benign	0.02
R7073:Samd7	UTSW	3	30,810,631 (GRCm39)	missense	probably benign	0.21
R8007:Samd7	UTSW	3	30,812,531 (GRCm39)	missense	probably damaging	1.00
R8368:Samd7	UTSW	3	30,819,574 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GCGTTCACCTCTAGCTACATCACTG -3'
(R):5'- GCAAAATGCACGTTGGACAAAGCTC -3'

Sequencing Primer
(F):5'- TCTAGCTACATCACTGAAGAGAC -3'
(R):5'- CACGTTGGACAAAGCTCATTATG -3'

Posted On

2014-03-28