Incidental Mutation 'R1474:U2surp'
ID 163925
Institutional Source Beutler Lab
Gene Symbol U2surp
Ensembl Gene ENSMUSG00000032407
Gene Name U2 snRNP-associated SURP domain containing
Synonyms 2610101N10Rik
MMRRC Submission 039527-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.956) question?
Stock # R1474 (G1)
Quality Score 225
Status Validated
Chromosome 9
Chromosomal Location 95338951-95394049 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 95375251 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 157 (I157T)
Ref Sequence ENSEMBL: ENSMUSP00000151121 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000078374] [ENSMUST00000079659] [ENSMUST00000191213] [ENSMUST00000217176]
AlphaFold Q6NV83
Predicted Effect probably benign
Transcript: ENSMUST00000078374
AA Change: I113T

PolyPhen 2 Score 0.265 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000077482
Gene: ENSMUSG00000032407
AA Change: I113T

DomainStartEndE-ValueType
low complexity region 18 27 N/A INTRINSIC
low complexity region 54 75 N/A INTRINSIC
coiled coil region 148 186 N/A INTRINSIC
RRM 231 307 1.85e-18 SMART
low complexity region 313 323 N/A INTRINSIC
SWAP 384 438 1.07e-20 SMART
RPR 493 632 1.42e-41 SMART
internal_repeat_1 648 665 6.09e-7 PROSPERO
internal_repeat_1 678 698 6.09e-7 PROSPERO
coiled coil region 742 769 N/A INTRINSIC
cwf21 792 843 6.31e-17 SMART
low complexity region 881 933 N/A INTRINSIC
low complexity region 939 985 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000079659
AA Change: I157T

PolyPhen 2 Score 0.485 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000078602
Gene: ENSMUSG00000032407
AA Change: I157T

DomainStartEndE-ValueType
low complexity region 18 27 N/A INTRINSIC
low complexity region 98 119 N/A INTRINSIC
coiled coil region 192 230 N/A INTRINSIC
RRM 275 351 1.85e-18 SMART
low complexity region 357 367 N/A INTRINSIC
SWAP 428 482 1.07e-20 SMART
RPR 537 676 1.42e-41 SMART
internal_repeat_1 692 709 1.14e-6 PROSPERO
internal_repeat_1 722 742 1.14e-6 PROSPERO
coiled coil region 786 813 N/A INTRINSIC
cwf21 836 887 6.31e-17 SMART
low complexity region 925 977 N/A INTRINSIC
low complexity region 983 1029 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000185515
AA Change: I174T
Predicted Effect probably benign
Transcript: ENSMUST00000190019
Predicted Effect probably benign
Transcript: ENSMUST00000191213
AA Change: I157T

PolyPhen 2 Score 0.020 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000140614
Gene: ENSMUSG00000032407
AA Change: I157T

DomainStartEndE-ValueType
low complexity region 18 27 N/A INTRINSIC
low complexity region 98 119 N/A INTRINSIC
coiled coil region 192 230 N/A INTRINSIC
RRM 275 351 7.8e-21 SMART
low complexity region 357 367 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000217176
AA Change: I157T

PolyPhen 2 Score 0.485 (Sensitivity: 0.88; Specificity: 0.90)
Meta Mutation Damage Score 0.0642 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.4%
  • 10x: 96.6%
  • 20x: 93.6%
Validation Efficiency 95% (104/110)
Allele List at MGI
Other mutations in this stock
Total: 106 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca8a C A 11: 109,960,635 (GRCm39) A628S probably damaging Het
Abca9 T C 11: 110,036,405 (GRCm39) N568S probably damaging Het
Ada C T 2: 163,574,814 (GRCm39) A108T possibly damaging Het
Adam6a T A 12: 113,508,069 (GRCm39) D147E possibly damaging Het
Ampd1 A T 3: 103,006,154 (GRCm39) T655S probably damaging Het
Ankk1 A G 9: 49,327,139 (GRCm39) F680S probably damaging Het
Asap1 G A 15: 63,991,869 (GRCm39) T783I probably benign Het
Astn1 T A 1: 158,329,923 (GRCm39) N259K probably damaging Het
Birc6 T C 17: 74,886,673 (GRCm39) V667A probably damaging Het
Brat1 G A 5: 140,698,382 (GRCm39) V185I probably benign Het
Btnl6 T C 17: 34,732,620 (GRCm39) Y318C probably damaging Het
Caskin2 G A 11: 115,694,522 (GRCm39) P360S probably benign Het
Ccdc121rt3 T C 5: 112,503,642 (GRCm39) T21A probably benign Het
Cd68 T A 11: 69,555,754 (GRCm39) probably benign Het
Cdca2 T C 14: 67,952,355 (GRCm39) probably benign Het
Cdk6 G A 5: 3,523,217 (GRCm39) M212I probably benign Het
Ceacam5 T A 7: 17,481,159 (GRCm39) F302Y probably damaging Het
Celsr2 T C 3: 108,301,055 (GRCm39) E2746G possibly damaging Het
Clec4a4 G A 6: 122,989,703 (GRCm39) V115I probably benign Het
Clip3 C A 7: 29,998,307 (GRCm39) A251E possibly damaging Het
Cmah T C 13: 24,623,180 (GRCm39) L350P probably damaging Het
Cntnap5a C T 1: 116,370,103 (GRCm39) R907* probably null Het
Cntnap5b T C 1: 99,999,814 (GRCm39) Y191H probably benign Het
Col4a4 A T 1: 82,458,207 (GRCm39) C1122* probably null Het
Coq5 A G 5: 115,433,842 (GRCm39) probably benign Het
Cpxcr1 A G X: 115,387,136 (GRCm39) K16E possibly damaging Het
Dclk3 T C 9: 111,298,304 (GRCm39) I616T probably benign Het
Dhrs3 A T 4: 144,646,057 (GRCm39) T122S probably damaging Het
Dnm1 T C 2: 32,210,596 (GRCm39) I502V probably benign Het
Dscaml1 G T 9: 45,596,519 (GRCm39) G788W probably damaging Het
Dusp10 C T 1: 183,769,645 (GRCm39) probably null Het
Ehbp1l1 C A 19: 5,769,112 (GRCm39) L730F possibly damaging Het
Eif2ak1 C T 5: 143,808,785 (GRCm39) H75Y probably damaging Het
Evi2a T C 11: 79,418,398 (GRCm39) T71A probably benign Het
Fam184a A T 10: 53,511,461 (GRCm39) S1073T probably damaging Het
Fam227a T C 15: 79,499,582 (GRCm39) Y591C probably damaging Het
Fam83a C T 15: 57,873,272 (GRCm39) T367M probably benign Het
Fam83g A G 11: 61,593,819 (GRCm39) D451G probably damaging Het
Fbn1 A G 2: 125,203,185 (GRCm39) F1213L possibly damaging Het
Fcgbp G A 7: 27,791,273 (GRCm39) V845I probably benign Het
Fermt1 C T 2: 132,766,942 (GRCm39) E342K probably benign Het
Foxn1 T A 11: 78,251,933 (GRCm39) M433L probably benign Het
Gm6632 T G 5: 59,211,679 (GRCm39) noncoding transcript Het
Gnl3 A T 14: 30,738,418 (GRCm39) probably benign Het
Hhipl1 C T 12: 108,277,996 (GRCm39) T108I probably damaging Het
Hs2st1 A T 3: 144,141,256 (GRCm39) F271I possibly damaging Het
Ido1 T C 8: 25,074,462 (GRCm39) S303G probably damaging Het
Ints2 C T 11: 86,117,607 (GRCm39) R705H probably damaging Het
Kcnc2 A G 10: 112,292,305 (GRCm39) K49E probably damaging Het
Kif3b T A 2: 153,162,235 (GRCm39) V482E probably damaging Het
Ldlrad2 G A 4: 137,299,525 (GRCm39) P100S probably benign Het
Lrba G T 3: 86,687,573 (GRCm39) probably benign Het
Lsm11 A T 11: 45,824,730 (GRCm39) W266R probably benign Het
Mob3a A T 10: 80,522,988 (GRCm39) M215K probably benign Het
Mterf1b T G 5: 4,247,163 (GRCm39) L268R probably damaging Het
Mvk T C 5: 114,598,157 (GRCm39) F365L probably damaging Het
Myo16 T A 8: 10,552,796 (GRCm39) F945I probably damaging Het
Myo1f G T 17: 33,813,001 (GRCm39) K602N possibly damaging Het
Nr2c2ap A T 8: 70,585,765 (GRCm39) M108L probably benign Het
Ofcc1 C T 13: 40,362,305 (GRCm39) G206R probably benign Het
Ogfrl1 A G 1: 23,414,890 (GRCm39) F206L probably damaging Het
Ola1 A T 2: 72,987,188 (GRCm39) I148N probably damaging Het
Or14c46 G T 7: 85,918,270 (GRCm39) H242Q probably damaging Het
Or4d10b T A 19: 12,036,844 (GRCm39) T91S probably benign Het
Or51f1d A G 7: 102,701,288 (GRCm39) Y261C probably damaging Het
Or6c2 A T 10: 129,362,824 (GRCm39) M243L probably benign Het
Or9m2 A G 2: 87,821,334 (GRCm39) N293S probably damaging Het
Otof A G 5: 30,536,876 (GRCm39) probably null Het
Pah G T 10: 87,414,175 (GRCm39) K341N probably damaging Het
Pfdn5 T A 15: 102,236,946 (GRCm39) probably null Het
Piezo2 A G 18: 63,216,202 (GRCm39) C960R probably damaging Het
Pitx2 T C 3: 129,012,488 (GRCm39) V306A probably damaging Het
Pkd1l2 C A 8: 117,792,236 (GRCm39) probably benign Het
Plekho1 T C 3: 95,896,878 (GRCm39) E197G probably damaging Het
Polr2i A G 7: 29,932,227 (GRCm39) N34S probably damaging Het
Psph A T 5: 129,848,614 (GRCm39) D22E probably damaging Het
Ptprs C A 17: 56,731,128 (GRCm39) A687S probably damaging Het
Ralgapa1 T C 12: 55,788,265 (GRCm39) K606R probably benign Het
Rigi A G 4: 40,208,868 (GRCm39) V703A possibly damaging Het
Rims1 A G 1: 22,577,362 (GRCm39) probably benign Het
Rnf213 C T 11: 119,328,576 (GRCm39) P2002L probably damaging Het
Ryr3 A T 2: 112,740,307 (GRCm39) C555S probably damaging Het
Sftpd C A 14: 40,894,384 (GRCm39) G345V probably damaging Het
Slc41a1 T A 1: 131,774,319 (GRCm39) M462K probably damaging Het
Slc44a2 A G 9: 21,264,990 (GRCm39) E676G probably damaging Het
Sox6 T A 7: 115,300,926 (GRCm39) probably benign Het
Spdye4b G A 5: 143,181,472 (GRCm39) R109Q probably damaging Het
Spef1l C A 7: 139,556,555 (GRCm39) R144L probably benign Het
Spink8 A T 9: 109,649,706 (GRCm39) I63L probably damaging Het
St3gal3 A G 4: 117,871,983 (GRCm39) L73P probably damaging Het
Stab1 A G 14: 30,871,818 (GRCm39) L1247P probably benign Het
Tat A G 8: 110,718,195 (GRCm39) R27G probably benign Het
Tcerg1l C T 7: 137,881,804 (GRCm39) R295H probably damaging Het
Tfrc T C 16: 32,445,467 (GRCm39) V596A probably damaging Het
Tgfb3 C T 12: 86,116,120 (GRCm39) probably null Het
Tmed5 A T 5: 108,280,248 (GRCm39) S15T probably benign Het
Tph1 A T 7: 46,303,286 (GRCm39) S231T probably benign Het
Trim30d G A 7: 104,121,701 (GRCm39) S198L probably damaging Het
Trpm6 T C 19: 18,773,859 (GRCm39) M412T probably benign Het
Ttn G T 2: 76,612,589 (GRCm39) D15417E probably benign Het
Ubr4 A G 4: 139,156,890 (GRCm39) D2305G probably damaging Het
Uvssa A G 5: 33,546,165 (GRCm39) K179E probably benign Het
Vps35l T C 7: 118,359,436 (GRCm39) F230S probably damaging Het
Xirp2 A G 2: 67,355,411 (GRCm39) K3391E probably benign Het
Xpo7 T A 14: 70,936,473 (GRCm39) H170L probably benign Het
Zrsr2-ps1 T C 11: 22,924,404 (GRCm39) W393R probably benign Het
Other mutations in U2surp
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00583:U2surp APN 9 95,343,577 (GRCm39) utr 3 prime probably benign
IGL01122:U2surp APN 9 95,372,287 (GRCm39) missense probably benign 0.02
IGL01985:U2surp APN 9 95,372,279 (GRCm39) missense probably damaging 1.00
IGL01992:U2surp APN 9 95,364,234 (GRCm39) missense probably damaging 0.99
IGL01992:U2surp APN 9 95,346,472 (GRCm39) missense possibly damaging 0.46
IGL02300:U2surp APN 9 95,370,823 (GRCm39) missense probably damaging 1.00
IGL02491:U2surp APN 9 95,372,273 (GRCm39) missense probably damaging 0.98
IGL02503:U2surp APN 9 95,384,622 (GRCm39) missense probably benign 0.03
IGL02615:U2surp APN 9 95,375,284 (GRCm39) missense probably benign 0.00
IGL02628:U2surp APN 9 95,354,143 (GRCm39) missense possibly damaging 0.89
IGL02682:U2surp APN 9 95,363,704 (GRCm39) critical splice donor site probably null
IGL02721:U2surp APN 9 95,356,488 (GRCm39) missense probably benign 0.10
IGL03200:U2surp APN 9 95,373,444 (GRCm39) nonsense probably null
coup UTSW 9 95,359,565 (GRCm39) missense probably damaging 1.00
R0095:U2surp UTSW 9 95,382,737 (GRCm39) splice site probably null
R0373:U2surp UTSW 9 95,366,496 (GRCm39) missense probably benign 0.08
R0376:U2surp UTSW 9 95,366,496 (GRCm39) missense probably benign 0.08
R0377:U2surp UTSW 9 95,366,496 (GRCm39) missense probably benign 0.08
R0416:U2surp UTSW 9 95,367,660 (GRCm39) missense probably damaging 1.00
R0682:U2surp UTSW 9 95,366,496 (GRCm39) missense probably benign 0.08
R0948:U2surp UTSW 9 95,343,550 (GRCm39) utr 3 prime probably benign
R1420:U2surp UTSW 9 95,344,856 (GRCm39) missense probably benign 0.33
R1555:U2surp UTSW 9 95,348,630 (GRCm39) missense probably damaging 1.00
R1597:U2surp UTSW 9 95,363,793 (GRCm39) splice site probably benign
R1638:U2surp UTSW 9 95,366,280 (GRCm39) missense possibly damaging 0.95
R1693:U2surp UTSW 9 95,393,913 (GRCm39) start codon destroyed probably null 0.53
R1851:U2surp UTSW 9 95,364,150 (GRCm39) nonsense probably null
R2271:U2surp UTSW 9 95,373,473 (GRCm39) missense possibly damaging 0.80
R2679:U2surp UTSW 9 95,358,285 (GRCm39) missense possibly damaging 0.82
R2851:U2surp UTSW 9 95,382,735 (GRCm39) splice site probably null
R3769:U2surp UTSW 9 95,375,750 (GRCm39) splice site probably benign
R4596:U2surp UTSW 9 95,367,681 (GRCm39) missense probably damaging 1.00
R4672:U2surp UTSW 9 95,375,198 (GRCm39) missense possibly damaging 0.83
R4763:U2surp UTSW 9 95,393,844 (GRCm39) intron probably benign
R4995:U2surp UTSW 9 95,344,847 (GRCm39) utr 3 prime probably benign
R5805:U2surp UTSW 9 95,361,357 (GRCm39) missense possibly damaging 0.51
R6006:U2surp UTSW 9 95,361,360 (GRCm39) missense probably damaging 0.96
R6249:U2surp UTSW 9 95,382,869 (GRCm39) missense probably benign 0.07
R6260:U2surp UTSW 9 95,358,210 (GRCm39) missense probably damaging 0.99
R6378:U2surp UTSW 9 95,373,474 (GRCm39) missense probably benign 0.41
R6487:U2surp UTSW 9 95,359,565 (GRCm39) missense probably damaging 1.00
R6585:U2surp UTSW 9 95,354,124 (GRCm39) missense probably damaging 1.00
R6721:U2surp UTSW 9 95,373,157 (GRCm39) missense probably damaging 0.99
R6760:U2surp UTSW 9 95,375,764 (GRCm39) missense probably benign 0.27
R7065:U2surp UTSW 9 95,367,712 (GRCm39) missense probably benign 0.01
R7167:U2surp UTSW 9 95,363,726 (GRCm39) missense probably damaging 0.98
R7219:U2surp UTSW 9 95,372,215 (GRCm39) nonsense probably null
R7232:U2surp UTSW 9 95,375,770 (GRCm39) missense probably benign 0.03
R7460:U2surp UTSW 9 95,344,877 (GRCm39) missense unknown
R7547:U2surp UTSW 9 95,361,402 (GRCm39) missense possibly damaging 0.94
R7609:U2surp UTSW 9 95,367,732 (GRCm39) splice site probably null
R7761:U2surp UTSW 9 95,370,814 (GRCm39) missense probably damaging 1.00
R8520:U2surp UTSW 9 95,384,607 (GRCm39) missense possibly damaging 0.88
R9059:U2surp UTSW 9 95,363,716 (GRCm39) missense probably damaging 1.00
R9065:U2surp UTSW 9 95,359,563 (GRCm39) missense probably benign
R9124:U2surp UTSW 9 95,346,468 (GRCm39) nonsense probably null
R9266:U2surp UTSW 9 95,366,468 (GRCm39) missense probably damaging 1.00
R9488:U2surp UTSW 9 95,356,535 (GRCm39) missense
X0018:U2surp UTSW 9 95,367,650 (GRCm39) missense probably damaging 0.98
X0018:U2surp UTSW 9 95,357,341 (GRCm39) missense probably benign 0.14
Predicted Primers PCR Primer
(F):5'- TGCACTCAGAGTACCAATAACAATGCC -3'
(R):5'- GCGGGGTTGTTAATGCAGCTAAAG -3'

Sequencing Primer
(F):5'- TGCCAAATTCTAAAATCACTGCTC -3'
(R):5'- GGCTTTGAAAACAACCCTTGG -3'
Posted On 2014-03-28