Mutagenetix > Incidental Mutation

Incidental Mutation 'R1478:Gde1'

165625

Institutional Source

Beutler Lab

Gene Symbol

Gde1

Ensembl Gene

ENSMUSG00000033917

Gene Name

glycerophosphodiester phosphodiesterase 1

Synonyms

1200003M13Rik, MIR16

MMRRC Submission

039531-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.174) question?

Stock #

R1478 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

118287781-118304961 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 118291007 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Lysine at position 106 (T106K)

Ref Sequence

ENSEMBL: ENSMUSP00000122015 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038791] [ENSMUST00000132509] [ENSMUST00000207323] [ENSMUST00000208040]

AlphaFold

Q9JL56

Predicted Effect

probably benign
Transcript: ENSMUST00000038791
AA Change: T216K

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000046371
Gene: ENSMUSG00000033917
AA Change: T216K

Domain	Start	End	E-Value	Type
low complexity region	17	24	N/A	INTRINSIC
Pfam:GDPD	70	325	1.1e-35	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000132509
AA Change: T106K

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000122015
Gene: ENSMUSG00000033917
AA Change: T106K

Domain	Start	End	E-Value	Type
Pfam:GDPD	1	135	1.7e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000207323
AA Change: T91K

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000208040

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000208632

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 95.7%
20x: 90.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele lack glycero-phospho-N-acyl ethanolamine (GP-NAE) phosphodiesterase activity in the brain. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aacs	T	A	5: 125,580,287 (GRCm39)	I204N	possibly damaging	Het
Acaca	A	G	11: 84,263,453 (GRCm39)	T2025A	probably damaging	Het
B4galt3	C	T	1: 171,103,938 (GRCm39)	R170C	probably benign	Het
BC028528	T	C	3: 95,799,271 (GRCm39)		probably null	Het
Ccdc73	A	T	2: 104,737,955 (GRCm39)	Q17L	possibly damaging	Het
Ccdc73	A	G	2: 104,745,012 (GRCm39)	T50A	possibly damaging	Het
Ccdc83	T	C	7: 89,908,677 (GRCm39)	D19G	probably damaging	Het
Ccn6	G	A	10: 39,029,239 (GRCm39)	R230W	probably damaging	Het
Cct8l1	T	C	5: 25,722,767 (GRCm39)	V494A	probably benign	Het
Chd1	T	C	17: 15,959,769 (GRCm39)	F663L	probably damaging	Het
Chn2	A	T	6: 54,270,065 (GRCm39)	E319V	probably damaging	Het
Cnnm1	T	C	19: 43,460,295 (GRCm39)	V679A	probably damaging	Het
Cntn6	C	T	6: 104,753,389 (GRCm39)	T447I	probably benign	Het
Cyp3a11	G	T	5: 145,795,581 (GRCm39)	L457I	probably benign	Het
Dera	T	A	6: 137,807,193 (GRCm39)	S214T	possibly damaging	Het
Dmtf1	A	G	5: 9,171,404 (GRCm39)	V501A	possibly damaging	Het
Dnpep	A	G	1: 75,292,671 (GRCm39)	V114A	probably damaging	Het
Dscam	C	T	16: 96,592,110 (GRCm39)	V722M	probably benign	Het
Dsp	A	G	13: 38,365,114 (GRCm39)	N499S	probably damaging	Het
Ecd	A	T	14: 20,396,725 (GRCm39)	Y53*	probably null	Het
Esyt3	T	C	9: 99,200,119 (GRCm39)	T692A	probably benign	Het
Fat1	T	A	8: 45,478,659 (GRCm39)	N2545K	probably damaging	Het
Fndc3a	A	G	14: 72,795,072 (GRCm39)		probably null	Het
Fscn3	A	G	6: 28,430,567 (GRCm39)	M246V	probably benign	Het
Gjc2	A	G	11: 59,068,434 (GRCm39)	I16T	possibly damaging	Het
Hacd4	A	T	4: 88,341,260 (GRCm39)	M168K	probably damaging	Het
Hmx3	A	G	7: 131,145,826 (GRCm39)	E178G	probably damaging	Het
Htt	A	G	5: 34,961,171 (GRCm39)	Y266C	probably damaging	Het
Jkampl	A	T	6: 73,446,039 (GRCm39)	L170Q	probably damaging	Het
Kif27	G	T	13: 58,451,359 (GRCm39)	R990S	probably damaging	Het
Krtap22-2	A	T	16: 88,807,534 (GRCm39)	Y21*	probably null	Het
Lrrc41	T	A	4: 115,952,405 (GRCm39)	L661*	probably null	Het
Lrrc63	T	C	14: 75,363,424 (GRCm39)	T236A	probably benign	Het
Mmp13	T	C	9: 7,272,892 (GRCm39)	L84P	probably damaging	Het
Myh8	T	C	11: 67,183,551 (GRCm39)	I754T	probably benign	Het
Neb	A	C	2: 52,065,619 (GRCm39)	D5961E	probably benign	Het
Nlrx1	T	C	9: 44,175,374 (GRCm39)	H134R	probably benign	Het
Npepps	A	T	11: 97,117,673 (GRCm39)	M542K	probably benign	Het
Nup160	C	T	2: 90,509,743 (GRCm39)		probably benign	Het
Or3a1c	T	A	11: 74,045,963 (GRCm39)		probably null	Het
Or8g33	T	A	9: 39,337,888 (GRCm39)	T160S	possibly damaging	Het
Pikfyve	T	C	1: 65,302,136 (GRCm39)		probably null	Het
Ppp6r1	A	T	7: 4,643,377 (GRCm39)		probably null	Het
Prss33	A	G	17: 24,054,072 (GRCm39)	W45R	probably damaging	Het
Ptprf	A	T	4: 118,069,302 (GRCm39)	Y980*	probably null	Het
Qrich1	T	C	9: 108,436,531 (GRCm39)	V743A	probably benign	Het
Rev3l	G	A	10: 39,659,329 (GRCm39)		probably null	Het
Samd9l	A	T	6: 3,376,369 (GRCm39)	N297K	probably benign	Het
Sap130	A	G	18: 31,813,527 (GRCm39)	H528R	possibly damaging	Het
Slc9b2	T	C	3: 135,031,863 (GRCm39)	V241A	probably benign	Het
Snx14	A	T	9: 88,276,581 (GRCm39)	V577E	probably benign	Het
Srrm2	T	C	17: 24,034,876 (GRCm39)	S507P	probably benign	Het
Stat2	A	G	10: 128,117,969 (GRCm39)		probably null	Het
Susd5	T	C	9: 113,925,752 (GRCm39)	F545S	probably benign	Het
Tafa2	T	A	10: 123,429,401 (GRCm39)	M5K	possibly damaging	Het
Tnnt2	A	G	1: 135,775,764 (GRCm39)	T107A	probably benign	Het
Trappc6b	T	A	12: 59,094,953 (GRCm39)	I41F	possibly damaging	Het
Ttn	T	A	2: 76,682,417 (GRCm39)		probably benign	Het
Vmn1r88	A	C	7: 12,911,878 (GRCm39)	D78A	probably damaging	Het
Xpc	C	T	6: 91,485,510 (GRCm39)	D122N	possibly damaging	Het
Xpo1	C	T	11: 23,241,623 (GRCm39)	A890V	probably damaging	Het
Zfp493	A	G	13: 67,934,680 (GRCm39)	H211R	probably damaging	Het
Zfp958	A	T	8: 4,679,190 (GRCm39)	H405L	probably damaging	Het

Other mutations in Gde1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00736:Gde1	APN	7	118,297,925 (GRCm39)	missense	probably damaging	1.00
IGL01288:Gde1	APN	7	118,290,863 (GRCm39)	missense	possibly damaging	0.63
IGL01370:Gde1	APN	7	118,288,383 (GRCm39)	unclassified	probably benign
IGL01677:Gde1	APN	7	118,293,710 (GRCm39)	splice site	probably benign
IGL02701:Gde1	APN	7	118,297,860 (GRCm39)	missense	probably damaging	1.00
R0130:Gde1	UTSW	7	118,294,283 (GRCm39)	missense	probably benign	0.24
R1191:Gde1	UTSW	7	118,304,664 (GRCm39)	missense	probably damaging	1.00
R1836:Gde1	UTSW	7	118,294,357 (GRCm39)	missense	possibly damaging	0.66
R2357:Gde1	UTSW	7	118,290,814 (GRCm39)	missense	probably benign	0.11
R4373:Gde1	UTSW	7	118,297,781 (GRCm39)	missense	possibly damaging	0.91
R4658:Gde1	UTSW	7	118,293,751 (GRCm39)	missense	probably benign
R5364:Gde1	UTSW	7	118,297,874 (GRCm39)	missense	probably benign	0.00
R5367:Gde1	UTSW	7	118,304,629 (GRCm39)	missense	probably damaging	1.00
R6255:Gde1	UTSW	7	118,291,004 (GRCm39)	missense	probably null	0.00
R7604:Gde1	UTSW	7	118,304,759 (GRCm39)	missense	possibly damaging	0.95
R7981:Gde1	UTSW	7	118,288,264 (GRCm39)	missense	probably damaging	1.00
R8935:Gde1	UTSW	7	118,297,914 (GRCm39)	missense	possibly damaging	0.70
R9100:Gde1	UTSW	7	118,294,305 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CTGGCACTGCTCTAACTTACAGGC -3'
(R):5'- GTAGTGGGCGTTGCATACCTACATC -3'

Sequencing Primer
(F):5'- ATCCTTCTGCATGAGGAAGGC -3'
(R):5'- CTACTTTGTTTCTCAAAGGACTTGTG -3'

Posted On

2014-03-28