Mutagenetix > Incidental Mutation

Incidental Mutation 'R1534:Wdr87-ps'

166821

Institutional Source

Beutler Lab

Gene Symbol

Wdr87-ps

Ensembl Gene

ENSMUSG00000074224

Gene Name

WD repeat domain 87, pseudogene

Synonyms

4932431P20Rik

MMRRC Submission

039573-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1534 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

29223968-29237480 bp(+) (GRCm39)

Type of Mutation

exon

DNA Base Change (assembly)

G to T at 29229854 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s):

AlphaFold

no structure available at present

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141713

SMART Domains

Protein: ENSMUSP00000120285
Gene: ENSMUSG00000074224

Domain	Start	End	E-Value	Type
Blast:WD40	94	134	1e-9	BLAST
WD40	139	176	1.59e1	SMART
WD40	228	269	9.51e1	SMART
WD40	272	311	3.33e-1	SMART
Blast:WD40	354	393	4e-15	BLAST
Blast:WD40	445	490	2e-22	BLAST
Blast:WD40	493	538	8e-15	BLAST
WD40	595	634	1.68e-6	SMART
low complexity region	701	710	N/A	INTRINSIC
low complexity region	915	926	N/A	INTRINSIC
coiled coil region	1135	1168	N/A	INTRINSIC
low complexity region	1211	1230	N/A	INTRINSIC
low complexity region	1239	1273	N/A	INTRINSIC
coiled coil region	1347	1375	N/A	INTRINSIC
coiled coil region	1399	1433	N/A	INTRINSIC
low complexity region	1435	1453	N/A	INTRINSIC
low complexity region	1497	1519	N/A	INTRINSIC
coiled coil region	1612	1707	N/A	INTRINSIC
coiled coil region	1731	1989	N/A	INTRINSIC
coiled coil region	2034	2072	N/A	INTRINSIC
coiled coil region	2127	2154	N/A	INTRINSIC
coiled coil region	2220	2302	N/A	INTRINSIC
coiled coil region	2357	2561	N/A	INTRINSIC
low complexity region	2993	2999	N/A	INTRINSIC

Meta Mutation Damage Score

0.4521

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.7%
20x: 94.0%

Validation Efficiency

98% (52/53)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy10	T	C	1: 165,345,881 (GRCm39)	I310T	probably damaging	Het
Adcy5	T	C	16: 35,073,629 (GRCm39)	V469A	possibly damaging	Het
Agrn	C	T	4: 156,261,141 (GRCm39)	C652Y	probably damaging	Het
Ankfn1	C	T	11: 89,413,977 (GRCm39)	V133M	probably damaging	Het
Ankrd13c	A	G	3: 157,706,757 (GRCm39)	T448A	probably benign	Het
Atp8b1	C	T	18: 64,678,335 (GRCm39)	V854M	probably damaging	Het
B4galt2	T	C	4: 117,734,669 (GRCm39)	H233R	probably damaging	Het
Bpifb5	T	G	2: 154,071,419 (GRCm39)	Y249D	possibly damaging	Het
Brd1	T	C	15: 88,573,866 (GRCm39)	I1078V	possibly damaging	Het
Celsr3	A	G	9: 108,726,083 (GRCm39)	E3104G	probably damaging	Het
Cyp2c69	T	A	19: 39,839,593 (GRCm39)	K343N	probably benign	Het
Cyp4f18	T	A	8: 72,746,799 (GRCm39)	D331V	probably damaging	Het
D130040H23Rik	T	C	8: 69,755,378 (GRCm39)	V261A	possibly damaging	Het
Dchs1	T	C	7: 105,421,247 (GRCm39)	D391G	probably damaging	Het
Diaph1	A	G	18: 38,029,146 (GRCm39)		probably null	Het
Fat4	T	C	3: 38,944,238 (GRCm39)	F1044L	probably damaging	Het
Frrs1	A	T	3: 116,672,057 (GRCm39)	T52S	probably benign	Het
Gan	G	A	8: 117,914,168 (GRCm39)	V189I	probably benign	Het
Hnf1b	A	G	11: 83,784,409 (GRCm39)		probably benign	Het
Itgae	T	C	11: 73,036,431 (GRCm39)	I1123T	possibly damaging	Het
Klra3	G	C	6: 130,310,107 (GRCm39)	R138G	probably benign	Het
Lrrc18	A	G	14: 32,730,478 (GRCm39)	K6E	possibly damaging	Het
Map2	G	A	1: 66,452,339 (GRCm39)	V492I	probably benign	Het
Mtr	A	T	13: 12,250,430 (GRCm39)		probably benign	Het
Ncor1	G	T	11: 62,269,330 (GRCm39)	A689E	possibly damaging	Het
Or52n2c	G	A	7: 104,574,621 (GRCm39)	L117F	possibly damaging	Het
Or5w22	T	A	2: 87,363,016 (GRCm39)	V213D	probably damaging	Het
Palm	T	G	10: 79,652,737 (GRCm39)	V42G	probably damaging	Het
Pcm1	G	A	8: 41,740,738 (GRCm39)	V995I	probably benign	Het
Pfkp	A	G	13: 6,669,574 (GRCm39)	V215A	probably damaging	Het
Prkg2	T	C	5: 99,142,420 (GRCm39)	Y238C	probably damaging	Het
Prr14	C	T	7: 127,073,154 (GRCm39)	A167V	probably benign	Het
Ptprn	A	C	1: 75,234,587 (GRCm39)		probably null	Het
Rexo2	A	T	9: 48,380,190 (GRCm39)	I214N	probably damaging	Het
Rrbp1	A	G	2: 143,830,233 (GRCm39)	S645P	probably damaging	Het
Rsf1	G	GACGGCGGCA	7: 97,229,116 (GRCm39)		probably benign	Het
Satb2	A	T	1: 56,987,392 (GRCm39)	C64*	probably null	Het
Sez6	A	G	11: 77,853,871 (GRCm39)	Y347C	probably damaging	Het
Sos2	A	G	12: 69,663,729 (GRCm39)	I585T	probably damaging	Het
Spg11	G	A	2: 121,922,806 (GRCm39)	T881M	probably damaging	Het
Tiam1	A	T	16: 89,664,396 (GRCm39)		probably null	Het
Tlcd5	A	G	9: 43,022,923 (GRCm39)	W126R	probably damaging	Het
Top1	T	C	2: 160,556,152 (GRCm39)	I537T	probably damaging	Het
Trappc6a	A	G	7: 19,248,138 (GRCm39)	S33G	probably benign	Het
Tspan11	G	C	6: 127,926,768 (GRCm39)	V239L	probably benign	Het
Ubr4	T	C	4: 139,155,462 (GRCm39)	V2190A	possibly damaging	Het
Usp28	A	G	9: 48,896,806 (GRCm39)	D9G	possibly damaging	Het
Uty	A	G	Y: 1,245,440 (GRCm39)	V35A	probably benign	Het
Vmn2r56	A	G	7: 12,427,954 (GRCm39)	S771P	probably benign	Het
Wars2	C	T	3: 99,124,177 (GRCm39)	A346V	probably damaging	Het
Zfp142	G	T	1: 74,611,247 (GRCm39)	N849K	probably benign	Het
Zfp180	A	T	7: 23,800,948 (GRCm39)	N66I	probably benign	Het

Other mutations in Wdr87-ps

Allele	Source	Chr	Coord	Type	Predicted Effect
IGL00272:Wdr87-ps	APN	7	29,237,047 (GRCm39)	exon	noncoding transcript
IGL00505:Wdr87-ps	APN	7	29,233,608 (GRCm39)	exon	noncoding transcript
IGL00557:Wdr87-ps	APN	7	29,235,227 (GRCm39)	exon	noncoding transcript
IGL00569:Wdr87-ps	APN	7	29,233,565 (GRCm39)	exon	noncoding transcript
IGL00966:Wdr87-ps	APN	7	29,236,888 (GRCm39)	exon	noncoding transcript
IGL01668:Wdr87-ps	APN	7	29,236,855 (GRCm39)	exon	noncoding transcript
K7371:Wdr87-ps	UTSW	7	29,230,417 (GRCm39)	exon	noncoding transcript
P0037:Wdr87-ps	UTSW	7	29,233,039 (GRCm39)	exon	noncoding transcript
R0179:Wdr87-ps	UTSW	7	29,235,365 (GRCm39)	exon	noncoding transcript
R0357:Wdr87-ps	UTSW	7	29,235,007 (GRCm39)	exon	noncoding transcript
R0358:Wdr87-ps	UTSW	7	29,231,636 (GRCm39)	exon	noncoding transcript
R0412:Wdr87-ps	UTSW	7	29,229,995 (GRCm39)	exon	noncoding transcript
R0530:Wdr87-ps	UTSW	7	29,229,545 (GRCm39)	exon	noncoding transcript
R0600:Wdr87-ps	UTSW	7	29,232,690 (GRCm39)	exon	noncoding transcript
R0675:Wdr87-ps	UTSW	7	29,231,942 (GRCm39)	exon	noncoding transcript
R1118:Wdr87-ps	UTSW	7	29,233,669 (GRCm39)	exon	noncoding transcript
R1395:Wdr87-ps	UTSW	7	29,230,812 (GRCm39)	exon	noncoding transcript
R1444:Wdr87-ps	UTSW	7	29,229,380 (GRCm39)	exon	noncoding transcript
R1476:Wdr87-ps	UTSW	7	29,234,315 (GRCm39)	exon	noncoding transcript
R1535:Wdr87-ps	UTSW	7	29,229,004 (GRCm39)	exon	noncoding transcript
R2023:Wdr87-ps	UTSW	7	29,230,959 (GRCm39)	exon	noncoding transcript
R2127:Wdr87-ps	UTSW	7	29,236,565 (GRCm39)	exon	noncoding transcript
R2141:Wdr87-ps	UTSW	7	29,230,935 (GRCm39)	exon	noncoding transcript
R2198:Wdr87-ps	UTSW	7	29,226,697 (GRCm39)	exon	noncoding transcript
R2201:Wdr87-ps	UTSW	7	29,235,950 (GRCm39)	exon	noncoding transcript
R2262:Wdr87-ps	UTSW	7	29,231,987 (GRCm39)	exon	noncoding transcript
R2263:Wdr87-ps	UTSW	7	29,231,987 (GRCm39)	exon	noncoding transcript
R4874:Wdr87-ps	UTSW	7	29,235,608 (GRCm39)	exon	noncoding transcript
R5064:Wdr87-ps	UTSW	7	29,235,080 (GRCm39)	exon	noncoding transcript
R5130:Wdr87-ps	UTSW	7	29,228,699 (GRCm39)	exon	noncoding transcript
R5366:Wdr87-ps	UTSW	7	29,232,964 (GRCm39)	exon	noncoding transcript

Predicted Primers

PCR Primer
(F):5'- GCATGAGTTTGACAAGCAACCCC -3'
(R):5'- CTGAGAATTGCCTCGATCAGGCTAC -3'

Sequencing Primer
(F):5'- CCCCAAACTCACTATGTGATTCC -3'
(R):5'- GCCTCGATCAGGCTACTAATG -3'

Posted On

2014-04-13