Mutagenetix > Incidental Mutation

Incidental Mutation 'R1572:Egfem1'

170823

Institutional Source

Beutler Lab

Gene Symbol

Egfem1

Ensembl Gene

ENSMUSG00000063600

Gene Name

EGF-like and EMI domain containing 1

Synonyms

6130401L20Rik

MMRRC Submission

039611-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1572 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

29136172-29745358 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 29702420 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Isoleucine at position 223 (N223I)

Ref Sequence

ENSEMBL: ENSMUSP00000112943 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000118531] [ENSMUST00000119598]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000118531

SMART Domains

Protein: ENSMUSP00000112907
Gene: ENSMUSG00000063600

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
Pfam:EMI	30	104	1.4e-15	PFAM
Blast:EGF_like	108	145	7e-10	BLAST
EGF	150	187	2.16e1	SMART
EGF_CA	188	228	2.66e-10	SMART
EGF	237	274	1.08e-1	SMART
EGF_like	275	313	9.19e-5	SMART
low complexity region	317	331	N/A	INTRINSIC
low complexity region	357	371	N/A	INTRINSIC
EGF	391	424	1.09e1	SMART
Blast:EGF_like	449	481	5e-10	BLAST
EGF	492	526	2.43e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000119598
AA Change: N223I

PolyPhen 2 Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000112943
Gene: ENSMUSG00000063600
AA Change: N223I

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
Pfam:EMI	31	102	1.1e-15	PFAM
Blast:EGF_like	108	145	6e-10	BLAST
EGF_CA	164	204	1.61e-9	SMART
EGF	208	244	6.4e-4	SMART
EGF_CA	245	285	1.81e-12	SMART
EGF	294	331	1.08e-1	SMART
EGF_like	332	370	9.19e-5	SMART
low complexity region	374	388	N/A	INTRINSIC
low complexity region	414	428	N/A	INTRINSIC
EGF	448	481	1.09e1	SMART
Blast:EGF_like	506	538	5e-10	BLAST
EGF	549	583	2.43e1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126420

Predicted Effect

probably benign
Transcript: ENSMUST00000140288

SMART Domains

Protein: ENSMUSP00000117016
Gene: ENSMUSG00000063600

Domain	Start	End	E-Value	Type
EGF_like	5	35	4.32e-1	SMART
EGF_CA	36	76	2.66e-10	SMART
EGF	85	122	1.08e-1	SMART
low complexity region	124	138	N/A	INTRINSIC
low complexity region	164	178	N/A	INTRINSIC
EGF	198	231	1.09e1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143483

SMART Domains

Protein: ENSMUSP00000114146
Gene: ENSMUSG00000063600

Domain	Start	End	E-Value	Type
EGF	22	59	2.16e1	SMART
EGF_CA	60	100	2.66e-10	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 98.7%
3x: 97.5%
10x: 92.9%
20x: 80.7%

Validation Efficiency

97% (130/134)

Allele List at MGI

Other mutations in this stock

Total: 112 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310030G06Rik	G	A	9: 50,651,973 (GRCm39)	T85M	probably damaging	Het
Actn1	A	G	12: 80,219,731 (GRCm39)		probably benign	Het
Afap1l1	A	T	18: 61,870,570 (GRCm39)	S603T	probably damaging	Het
Ahcy	T	C	2: 154,910,851 (GRCm39)	Y39C	probably benign	Het
Ankmy2	T	C	12: 36,236,941 (GRCm39)		probably null	Het
Anxa13	A	T	15: 58,220,655 (GRCm39)		noncoding transcript	Het
Aoc1	T	C	6: 48,882,720 (GRCm39)	S221P	possibly damaging	Het
Arhgef10	C	A	8: 15,041,211 (GRCm39)	A770D	possibly damaging	Het
Arhgef19	A	G	4: 140,982,065 (GRCm39)	D707G	probably benign	Het
Arhgef3	G	A	14: 27,123,692 (GRCm39)	R444H	probably damaging	Het
Asphd1	T	C	7: 126,548,271 (GRCm39)	I11V	probably benign	Het
Atp2b1	A	G	10: 98,830,537 (GRCm39)	M333V	probably benign	Het
BC051665	T	C	13: 60,932,841 (GRCm39)	Y40C	probably damaging	Het
Ccdc87	T	A	19: 4,890,341 (GRCm39)	S278T	probably benign	Het
Ccn3	T	A	15: 54,612,648 (GRCm39)	M219K	possibly damaging	Het
Cdcp3	T	A	7: 130,846,560 (GRCm39)	Y777*	probably null	Het
Chaf1b	G	A	16: 93,698,118 (GRCm39)	G463D	possibly damaging	Het
Chrna4	T	C	2: 180,671,100 (GRCm39)	T219A	possibly damaging	Het
Clcnkb	T	G	4: 141,134,406 (GRCm39)	T584P	possibly damaging	Het
Clptm1l	T	C	13: 73,755,866 (GRCm39)	S161P	probably benign	Het
Cmya5	T	C	13: 93,230,777 (GRCm39)	E1437G	possibly damaging	Het
Col13a1	A	T	10: 61,702,205 (GRCm39)		probably null	Het
Col3a1	T	C	1: 45,385,128 (GRCm39)	S82P	possibly damaging	Het
Cpeb3	A	T	19: 37,116,482 (GRCm39)	M383K	probably benign	Het
Cr2	T	A	1: 194,845,622 (GRCm39)	H111L	probably damaging	Het
Cttnbp2	T	C	6: 18,375,974 (GRCm39)	S1522G	possibly damaging	Het
Cul3	T	C	1: 80,260,506 (GRCm39)	D281G	possibly damaging	Het
Cyp2c70	T	G	19: 40,172,426 (GRCm39)	K72T	probably benign	Het
Cyp39a1	A	T	17: 43,991,020 (GRCm39)	I110F	probably damaging	Het
Cyp46a1	T	A	12: 108,318,198 (GRCm39)	M203K	probably null	Het
Cyp8b1	A	T	9: 121,744,024 (GRCm39)	V436D	possibly damaging	Het
Ddx17	T	C	15: 79,422,766 (GRCm39)	D324G	probably damaging	Het
Dop1b	A	G	16: 93,567,041 (GRCm39)	N1274S	probably damaging	Het
Dscaml1	G	A	9: 45,632,631 (GRCm39)	V1166I	probably benign	Het
Dsp	T	C	13: 38,379,714 (GRCm39)	V1554A	probably damaging	Het
Efr3a	T	A	15: 65,726,641 (GRCm39)		probably null	Het
Egr2	T	C	10: 67,375,805 (GRCm39)	S147P	probably damaging	Het
Elmo3	A	G	8: 106,034,933 (GRCm39)	T408A	probably benign	Het
Flnb	A	G	14: 7,883,908 (GRCm38)	D378G	probably damaging	Het
Foxj2	T	A	6: 122,810,220 (GRCm39)	M193K	probably benign	Het
Gm6327	A	G	16: 12,578,020 (GRCm39)		noncoding transcript	Het
Gm7694	T	C	1: 170,130,335 (GRCm39)	H21R	probably benign	Het
Gpr107	A	G	2: 31,057,037 (GRCm39)	D43G	probably damaging	Het
Grid2	T	A	6: 64,406,678 (GRCm39)	Y679*	probably null	Het
Grin2c	G	A	11: 115,146,900 (GRCm39)	P432S	possibly damaging	Het
H2-M10.1	A	G	17: 36,636,625 (GRCm39)	F60L	possibly damaging	Het
Hectd4	A	G	5: 121,439,941 (GRCm39)	D1147G	possibly damaging	Het
Idua	G	T	5: 108,828,455 (GRCm39)	A223S	probably benign	Het
Ifi206	T	C	1: 173,314,419 (GRCm39)	Q7R	probably benign	Het
Itgad	T	A	7: 127,802,406 (GRCm39)	V986E	probably damaging	Het
Itsn2	G	A	12: 4,700,044 (GRCm39)	R670H	probably benign	Het
Kdm4a	T	C	4: 117,996,146 (GRCm39)	E961G	possibly damaging	Het
Klra5	T	A	6: 129,883,585 (GRCm39)	I91L	probably damaging	Het
Kntc1	A	G	5: 123,910,176 (GRCm39)	T525A	probably damaging	Het
Lct	A	G	1: 128,221,932 (GRCm39)	F1536L	probably benign	Het
Lmod1	T	A	1: 135,291,671 (GRCm39)	D175E	probably benign	Het
Lonrf1	A	C	8: 36,701,126 (GRCm39)	D361E	probably benign	Het
Lrrc19	T	C	4: 94,526,666 (GRCm39)	Y297C	probably damaging	Het
Mast4	T	C	13: 102,873,431 (GRCm39)	E1787G	possibly damaging	Het
Mpp2	G	A	11: 101,951,374 (GRCm39)	A452V	probably benign	Het
Msh2	T	C	17: 88,026,080 (GRCm39)	V686A	possibly damaging	Het
Mthfd1	C	T	12: 76,317,193 (GRCm39)	Q15*	probably null	Het
Mtnr1b	A	T	9: 15,774,438 (GRCm39)	I207N	probably damaging	Het
Nid2	A	G	14: 19,855,480 (GRCm39)	T1207A	probably benign	Het
Nin	A	T	12: 70,085,524 (GRCm39)	V1569D	probably damaging	Het
Nrcam	T	A	12: 44,584,147 (GRCm39)		probably benign	Het
Nsd1	T	A	13: 55,394,782 (GRCm39)	H897Q	probably damaging	Het
Or10g9	A	G	9: 39,912,490 (GRCm39)	F11S	probably benign	Het
Or12d2	A	T	17: 37,624,371 (GRCm39)	N301K	probably benign	Het
Or2w2	T	A	13: 21,758,480 (GRCm39)	I49F	possibly damaging	Het
Or7d10	G	T	9: 19,832,208 (GRCm39)	K234N	probably benign	Het
Paip1	T	C	13: 119,588,320 (GRCm39)		probably benign	Het
Pcnx3	G	A	19: 5,735,375 (GRCm39)	R484*	probably null	Het
Pdxk	A	G	10: 78,283,814 (GRCm39)	Y127H	probably damaging	Het
Phf20	T	A	2: 156,129,754 (GRCm39)	V442E	probably benign	Het
Phlpp1	G	A	1: 106,320,519 (GRCm39)	D1505N	probably damaging	Het
Pkhd1	T	C	1: 20,417,664 (GRCm39)	T2496A	probably benign	Het
Pkhd1l1	A	G	15: 44,406,869 (GRCm39)	T2369A	probably benign	Het
Plod2	T	A	9: 92,485,120 (GRCm39)		probably benign	Het
Pnpla7	T	A	2: 24,905,263 (GRCm39)	M617K	possibly damaging	Het
Ppp1r16a	C	T	15: 76,577,869 (GRCm39)	Q328*	probably null	Het
Prkch	T	A	12: 73,696,131 (GRCm39)		probably null	Het
Prr12	G	A	7: 44,678,224 (GRCm39)	H1974Y	unknown	Het
Prr16	A	G	18: 51,436,042 (GRCm39)	I174V	probably benign	Het
Prss45	A	T	9: 110,667,497 (GRCm39)	T39S	probably benign	Het
Pum1	T	A	4: 130,445,515 (GRCm39)	D161E	probably damaging	Het
Rad51ap2	A	G	12: 11,507,113 (GRCm39)	D345G	probably damaging	Het
Ralgapb	A	G	2: 158,288,119 (GRCm39)		probably benign	Het
Rasgrp3	A	G	17: 75,807,729 (GRCm39)	H262R	possibly damaging	Het
Rnf213	T	A	11: 119,327,437 (GRCm39)	I1809N	probably damaging	Het
Ryr1	A	G	7: 28,761,616 (GRCm39)	L3177P	probably damaging	Het
Scyl2	C	A	10: 89,486,818 (GRCm39)	R230L	probably damaging	Het
Sfxn2	T	C	19: 46,570,915 (GRCm39)		probably benign	Het
Slc18b1	T	C	10: 23,674,639 (GRCm39)		probably benign	Het
Spata31d1d	T	C	13: 59,876,005 (GRCm39)	H510R	probably benign	Het
Stab1	A	T	14: 30,872,780 (GRCm39)	N1109K	probably damaging	Het
Styxl2	C	T	1: 165,927,024 (GRCm39)	V863M	possibly damaging	Het
Sult3a2	A	G	10: 33,657,973 (GRCm39)	S47P	probably damaging	Het
Tenm3	T	C	8: 48,682,028 (GRCm39)	N2518S	possibly damaging	Het
Tex21	G	T	12: 76,253,665 (GRCm39)	P416Q	probably benign	Het
Tex38	T	C	4: 115,637,503 (GRCm39)	N100S	probably benign	Het
Thsd4	A	C	9: 60,301,836 (GRCm39)		probably benign	Het
Ticrr	T	C	7: 79,331,572 (GRCm39)	V723A	probably damaging	Het
Tmprss15	A	G	16: 78,887,717 (GRCm39)	V30A	probably benign	Het
Uba3	A	G	6: 97,162,298 (GRCm39)		probably benign	Het
Ubr1	T	C	2: 120,765,800 (GRCm39)		probably benign	Het
Uchl4	A	T	9: 64,143,013 (GRCm39)	I165L	probably benign	Het
Vmn2r112	A	T	17: 22,822,125 (GRCm39)	T268S	possibly damaging	Het
Wfdc3	T	C	2: 164,586,114 (GRCm39)		probably benign	Het
Zfp282	T	A	6: 47,869,801 (GRCm39)	L282Q	probably damaging	Het
Zfp422	A	T	6: 116,603,745 (GRCm39)	C85S	probably damaging	Het
Zfp790	A	T	7: 29,527,564 (GRCm39)	Q83L	probably benign	Het

Other mutations in Egfem1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00766:Egfem1	APN	3	29,711,302 (GRCm39)	missense	possibly damaging	0.54
IGL02111:Egfem1	APN	3	29,705,045 (GRCm39)	splice site	probably null
IGL02325:Egfem1	APN	3	29,206,066 (GRCm39)	missense	probably benign	0.01
IGL02450:Egfem1	APN	3	29,711,417 (GRCm39)	critical splice donor site	probably null
IGL02543:Egfem1	APN	3	29,722,529 (GRCm39)	missense	probably benign	0.01
IGL02835:Egfem1	UTSW	3	29,711,390 (GRCm39)	missense	probably damaging	1.00
P0033:Egfem1	UTSW	3	29,744,340 (GRCm39)	missense	probably damaging	1.00
R0010:Egfem1	UTSW	3	29,637,068 (GRCm39)	missense	probably damaging	1.00
R0294:Egfem1	UTSW	3	29,744,270 (GRCm39)	missense	probably damaging	1.00
R0379:Egfem1	UTSW	3	29,722,399 (GRCm39)	missense	possibly damaging	0.92
R1479:Egfem1	UTSW	3	29,711,314 (GRCm39)	missense	probably damaging	1.00
R1754:Egfem1	UTSW	3	29,722,482 (GRCm39)	missense	possibly damaging	0.68
R2568:Egfem1	UTSW	3	29,637,080 (GRCm39)	missense	probably damaging	1.00
R2679:Egfem1	UTSW	3	29,724,825 (GRCm39)	missense	probably benign	0.01
R3411:Egfem1	UTSW	3	29,637,170 (GRCm39)	missense	probably damaging	1.00
R3801:Egfem1	UTSW	3	29,206,075 (GRCm39)	missense	probably benign	0.14
R4049:Egfem1	UTSW	3	29,740,880 (GRCm39)	missense	probably benign	0.01
R4851:Egfem1	UTSW	3	29,206,032 (GRCm39)	missense	possibly damaging	0.92
R4917:Egfem1	UTSW	3	29,206,042 (GRCm39)	missense	probably damaging	1.00
R4918:Egfem1	UTSW	3	29,206,042 (GRCm39)	missense	probably damaging	1.00
R4969:Egfem1	UTSW	3	29,637,145 (GRCm39)	missense	probably damaging	0.98
R4997:Egfem1	UTSW	3	29,207,739 (GRCm39)	missense	probably benign	0.00
R5148:Egfem1	UTSW	3	29,511,972 (GRCm39)	intron	probably benign
R5194:Egfem1	UTSW	3	29,411,345 (GRCm39)	critical splice donor site	probably null
R5284:Egfem1	UTSW	3	29,704,936 (GRCm39)	missense	possibly damaging	0.53
R5354:Egfem1	UTSW	3	29,136,361 (GRCm39)	critical splice donor site	probably null
R5627:Egfem1	UTSW	3	29,722,548 (GRCm39)	nonsense	probably null
R5677:Egfem1	UTSW	3	29,744,323 (GRCm39)	missense	probably damaging	0.99
R5928:Egfem1	UTSW	3	29,637,077 (GRCm39)	missense	possibly damaging	0.92
R5982:Egfem1	UTSW	3	29,711,419 (GRCm39)	splice site	probably null
R6419:Egfem1	UTSW	3	29,711,398 (GRCm39)	missense	probably damaging	1.00
R6475:Egfem1	UTSW	3	29,711,312 (GRCm39)	missense	probably damaging	1.00
R6586:Egfem1	UTSW	3	29,716,560 (GRCm39)	nonsense	probably null
R7046:Egfem1	UTSW	3	29,136,364 (GRCm39)	splice site	probably null
R7079:Egfem1	UTSW	3	29,207,731 (GRCm39)	missense	probably benign	0.00
R7308:Egfem1	UTSW	3	29,206,015 (GRCm39)	missense	probably benign	0.09
R7362:Egfem1	UTSW	3	29,206,069 (GRCm39)	missense	probably benign	0.01
R7684:Egfem1	UTSW	3	29,744,334 (GRCm39)	missense	probably damaging	0.97
R7697:Egfem1	UTSW	3	29,744,346 (GRCm39)	critical splice donor site	probably null
R7814:Egfem1	UTSW	3	29,740,940 (GRCm39)	missense	probably damaging	1.00
R8226:Egfem1	UTSW	3	29,711,404 (GRCm39)	missense	probably damaging	1.00
R8429:Egfem1	UTSW	3	29,711,417 (GRCm39)	critical splice donor site	probably null
R8928:Egfem1	UTSW	3	29,744,561 (GRCm39)	makesense	probably null
R9210:Egfem1	UTSW	3	29,207,743 (GRCm39)	missense	probably damaging	1.00
R9227:Egfem1	UTSW	3	29,411,317 (GRCm39)	missense	probably benign	0.03
R9230:Egfem1	UTSW	3	29,411,317 (GRCm39)	missense	probably benign	0.03
R9720:Egfem1	UTSW	3	29,716,580 (GRCm39)	missense	probably damaging	1.00
R9745:Egfem1	UTSW	3	29,716,532 (GRCm39)	missense	probably damaging	1.00
X0028:Egfem1	UTSW	3	29,711,295 (GRCm39)	missense	probably damaging	1.00
Z1177:Egfem1	UTSW	3	29,202,602 (GRCm39)	missense	probably benign	0.44

Predicted Primers

PCR Primer
(F):5'- GCCTTCTAAAGGACAGTTTGTTGGTGC -3'
(R):5'- TCCTACCTGCTCCAAGGGTTCAATC -3'

Sequencing Primer
(F):5'- ggaggggggaaagggaag -3'
(R):5'- TCCAAGGGTTCAATCTGACTAC -3'

Posted On

2014-04-13