Incidental Mutation 'R1575:Ssu72'
ID 171080
Institutional Source Beutler Lab
Gene Symbol Ssu72
Ensembl Gene ENSMUSG00000029038
Gene Name Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
Synonyms 2610101M12Rik, 1500011L16Rik, 1190002E22Rik
MMRRC Submission 039613-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.961) question?
Stock # R1575 (G1)
Quality Score 225
Status Validated
Chromosome 4
Chromosomal Location 155789272-155818336 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 155815814 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 86 (D86G)
Ref Sequence ENSEMBL: ENSMUSP00000101220 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000030905] [ENSMUST00000105595] [ENSMUST00000127188] [ENSMUST00000147721]
AlphaFold Q9CY97
Predicted Effect probably benign
Transcript: ENSMUST00000030905
AA Change: D86G

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000030905
Gene: ENSMUSG00000029038
AA Change: D86G

DomainStartEndE-ValueType
Pfam:Ssu72 6 194 1.3e-96 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000105595
AA Change: D86G

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000101220
Gene: ENSMUSG00000029038
AA Change: D86G

DomainStartEndE-ValueType
Pfam:Ssu72 4 176 2.8e-81 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000127188
SMART Domains Protein: ENSMUSP00000127341
Gene: ENSMUSG00000084845

DomainStartEndE-ValueType
Pfam:TMEM240 1 173 3.8e-108 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000147721
SMART Domains Protein: ENSMUSP00000130974
Gene: ENSMUSG00000084845

DomainStartEndE-ValueType
Pfam:TMEM240 1 173 1.5e-100 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176526
Predicted Effect noncoding transcript
Transcript: ENSMUST00000178987
SMART Domains Protein: ENSMUSP00000136958
Gene: ENSMUSG00000096221

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
low complexity region 41 52 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000197451
Meta Mutation Damage Score 0.2419 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.2%
  • 10x: 96.0%
  • 20x: 91.5%
Validation Efficiency 100% (72/72)
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgrl2 T A 3: 148,558,398 (GRCm39) T437S probably benign Het
Akna A G 4: 63,297,570 (GRCm39) F828S probably benign Het
Alg9 G T 9: 50,686,802 (GRCm39) A40S possibly damaging Het
Alox8 T A 11: 69,076,067 (GRCm39) H628L possibly damaging Het
Aox3 T C 1: 58,191,713 (GRCm39) W422R probably benign Het
Atp13a4 T C 16: 29,228,528 (GRCm39) D984G probably benign Het
Bcam T C 7: 19,494,307 (GRCm39) E363G possibly damaging Het
Cadps2 C A 6: 23,429,217 (GRCm39) V519F probably damaging Het
Calca A G 7: 114,234,396 (GRCm39) Y18H probably damaging Het
Cd70 A G 17: 57,453,364 (GRCm39) I100T probably damaging Het
Cdk4 T A 10: 126,900,520 (GRCm39) H95Q probably damaging Het
Chchd1 T A 14: 20,753,410 (GRCm39) N11K probably damaging Het
Cma2 T A 14: 56,210,272 (GRCm39) N52K probably damaging Het
Cyp3a16 A G 5: 145,373,267 (GRCm39) V500A probably benign Het
Dicer1 A G 12: 104,688,228 (GRCm39) probably null Het
Dnajc13 A G 9: 104,034,037 (GRCm39) S2206P probably benign Het
Dtl T C 1: 191,293,658 (GRCm39) probably null Het
Fam186b T C 15: 99,184,852 (GRCm39) T24A probably benign Het
Fbxw21 A G 9: 108,990,984 (GRCm39) V25A probably benign Het
Gins1 T C 2: 150,754,758 (GRCm39) S45P probably benign Het
Gtpbp2 T A 17: 46,476,869 (GRCm39) V349D probably damaging Het
Hyal5 G T 6: 24,876,792 (GRCm39) D222Y probably damaging Het
Itgal A G 7: 126,900,060 (GRCm39) probably null Het
Klk14 A G 7: 43,343,377 (GRCm39) probably null Het
Lama1 T A 17: 68,117,404 (GRCm39) L2518Q possibly damaging Het
Lrrc2 G A 9: 110,808,555 (GRCm39) G264D probably benign Het
Ltbp4 A G 7: 27,022,245 (GRCm39) S893P probably damaging Het
Mast4 G A 13: 102,875,771 (GRCm39) P1107L probably damaging Het
Mbd1 T A 18: 74,408,490 (GRCm39) probably null Het
Naip2 A T 13: 100,291,529 (GRCm39) D1136E probably benign Het
Naip2 G A 13: 100,291,537 (GRCm39) probably benign Het
Ncan G A 8: 70,562,848 (GRCm39) T470I probably benign Het
Npy1r A T 8: 67,156,813 (GRCm39) I78F probably damaging Het
Or10q1b A T 19: 13,682,889 (GRCm39) M233L probably benign Het
Or8b52 G A 9: 38,576,573 (GRCm39) T189M probably damaging Het
Palb2 A T 7: 121,710,061 (GRCm39) probably null Het
Pax3 T C 1: 78,080,121 (GRCm39) T422A probably benign Het
Pebp1 A T 5: 117,424,229 (GRCm39) D72E possibly damaging Het
Pnliprp1 A T 19: 58,728,901 (GRCm39) T363S probably benign Het
Rbm44 G A 1: 91,084,565 (GRCm39) probably null Het
Rbm47 T A 5: 66,182,358 (GRCm39) Y425F probably benign Het
Robo3 G T 9: 37,340,957 (GRCm39) A83E probably damaging Het
Rrm1 A G 7: 102,105,721 (GRCm39) Y279C probably damaging Het
Rslcan18 A T 13: 67,256,121 (GRCm39) probably benign Het
Scara5 C A 14: 65,968,314 (GRCm39) Q196K probably benign Het
Setd1b C T 5: 123,301,210 (GRCm39) probably benign Het
Siah1a A G 8: 87,451,869 (GRCm39) F205S probably damaging Het
Smr2 AT ATT 5: 88,256,683 (GRCm39) probably null Het
St7 G T 6: 17,886,110 (GRCm39) K357N probably damaging Het
Sv2b G A 7: 74,797,425 (GRCm39) T323I probably damaging Het
Syt1 T C 10: 108,340,361 (GRCm39) N319S probably benign Het
Tanc1 T A 2: 59,621,995 (GRCm39) F371L probably damaging Het
Tcf20 C A 15: 82,739,693 (GRCm39) G586V probably benign Het
Tg T C 15: 66,601,534 (GRCm39) probably null Het
Tyk2 A T 9: 21,026,758 (GRCm39) N620K probably benign Het
Ube2j1 T A 4: 33,045,116 (GRCm39) S130T probably benign Het
Ubr2 G T 17: 47,243,418 (GRCm39) P1696H probably damaging Het
Ubr5 A T 15: 38,041,085 (GRCm39) D266E probably damaging Het
Vipr2 A G 12: 116,107,892 (GRCm39) T426A probably benign Het
Vmn2r104 A T 17: 20,262,477 (GRCm39) W218R probably damaging Het
Vmn2r83 T A 10: 79,314,956 (GRCm39) N401K probably damaging Het
Vwf A G 6: 125,632,214 (GRCm39) E82G unknown Het
Vwf T A 6: 125,640,534 (GRCm39) Y2323* probably null Het
Wdr76 T G 2: 121,359,402 (GRCm39) V329G probably damaging Het
Zan A G 5: 137,460,214 (GRCm39) C1226R unknown Het
Zbtb16 G T 9: 48,743,572 (GRCm39) Q247K probably damaging Het
Zfp541 T C 7: 15,812,640 (GRCm39) V431A possibly damaging Het
Other mutations in Ssu72
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02126:Ssu72 APN 4 155,816,483 (GRCm39) missense probably benign 0.37
IGL02601:Ssu72 APN 4 155,789,882 (GRCm39) missense possibly damaging 0.90
R2145:Ssu72 UTSW 4 155,789,900 (GRCm39) missense probably damaging 0.98
R2517:Ssu72 UTSW 4 155,817,970 (GRCm39) missense probably damaging 1.00
R3935:Ssu72 UTSW 4 155,789,876 (GRCm39) missense probably benign 0.28
R4542:Ssu72 UTSW 4 155,817,934 (GRCm39) missense probably benign 0.00
R4851:Ssu72 UTSW 4 155,800,053 (GRCm39) missense possibly damaging 0.51
R5419:Ssu72 UTSW 4 155,800,007 (GRCm39) missense probably damaging 1.00
R6524:Ssu72 UTSW 4 155,799,997 (GRCm39) missense probably null 1.00
R7146:Ssu72 UTSW 4 155,815,850 (GRCm39) missense probably damaging 0.99
R7530:Ssu72 UTSW 4 155,815,786 (GRCm39) missense probably benign 0.00
R7996:Ssu72 UTSW 4 155,816,450 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- CCTAGAGCTATGTTGCCCCTGTTG -3'
(R):5'- GAATCCTCAAGCCATCCTATGCCAG -3'

Sequencing Primer
(F):5'- AAGCTCCTTGACTCTGGTGT -3'
(R):5'- TCCAGATGTCCATACAGGTCAG -3'
Posted On 2014-04-13