Incidental Mutation 'R1575:Dicer1'
| ID |
171117 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dicer1
|
| Ensembl Gene |
ENSMUSG00000041415 |
| Gene Name |
dicer 1, ribonuclease type III |
| Synonyms |
D12Ertd7e, Dicer1, 1110006F08Rik |
| MMRRC Submission |
039613-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R1575 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
12 |
| Chromosomal Location |
104654001-104718211 bp(-) (GRCm39) |
| Type of Mutation |
critical splice donor site (2 bp from exon) |
| DNA Base Change (assembly) |
A to G
at 104688228 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000043676
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000041987]
[ENSMUST00000222002]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably null
Transcript: ENSMUST00000041987
|
| SMART Domains |
Protein: ENSMUSP00000043676
Gene: ENSMUSG00000041415
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
30 |
233 |
5.14e-24 |
SMART |
|
low complexity region
|
403 |
419 |
N/A |
INTRINSIC |
|
HELICc
|
449 |
546 |
3.15e-10 |
SMART |
|
Pfam:Dicer_dimer
|
620 |
707 |
1.4e-25 |
PFAM |
|
low complexity region
|
713 |
723 |
N/A |
INTRINSIC |
|
PAZ
|
881 |
1056 |
1.67e-48 |
SMART |
|
Blast:PAZ
|
1080 |
1129 |
2e-8 |
BLAST |
|
RIBOc
|
1285 |
1582 |
1.83e-35 |
SMART |
|
RIBOc
|
1665 |
1831 |
5.97e-49 |
SMART |
|
DSRM
|
1834 |
1897 |
6.89e-9 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221293
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000222002
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000222528
|
| Meta Mutation Damage Score |
0.9490 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.2%
- 10x: 96.0%
- 20x: 91.5%
|
| Validation Efficiency |
100% (72/72) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein possessing an RNA helicase motif containing a DEXH box in its amino terminus and an RNA motif in the carboxy terminus. The encoded protein functions as a ribonuclease and is required by the RNA interference and small temporal RNA (stRNA) pathways to produce the active small RNA component that represses gene expression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2010]
PHENOTYPE: Mutation of this locus results in arrest of early embryonic development. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(25) : Targeted(14) Gene trapped(11)
|
| Other mutations in this stock |
Total: 67 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adgrl2 |
T |
A |
3: 148,558,398 (GRCm39) |
T437S |
probably benign |
Het |
| Akna |
A |
G |
4: 63,297,570 (GRCm39) |
F828S |
probably benign |
Het |
| Alg9 |
G |
T |
9: 50,686,802 (GRCm39) |
A40S |
possibly damaging |
Het |
| Alox8 |
T |
A |
11: 69,076,067 (GRCm39) |
H628L |
possibly damaging |
Het |
| Aox3 |
T |
C |
1: 58,191,713 (GRCm39) |
W422R |
probably benign |
Het |
| Atp13a4 |
T |
C |
16: 29,228,528 (GRCm39) |
D984G |
probably benign |
Het |
| Bcam |
T |
C |
7: 19,494,307 (GRCm39) |
E363G |
possibly damaging |
Het |
| Cadps2 |
C |
A |
6: 23,429,217 (GRCm39) |
V519F |
probably damaging |
Het |
| Calca |
A |
G |
7: 114,234,396 (GRCm39) |
Y18H |
probably damaging |
Het |
| Cd70 |
A |
G |
17: 57,453,364 (GRCm39) |
I100T |
probably damaging |
Het |
| Cdk4 |
T |
A |
10: 126,900,520 (GRCm39) |
H95Q |
probably damaging |
Het |
| Chchd1 |
T |
A |
14: 20,753,410 (GRCm39) |
N11K |
probably damaging |
Het |
| Cma2 |
T |
A |
14: 56,210,272 (GRCm39) |
N52K |
probably damaging |
Het |
| Cyp3a16 |
A |
G |
5: 145,373,267 (GRCm39) |
V500A |
probably benign |
Het |
| Dnajc13 |
A |
G |
9: 104,034,037 (GRCm39) |
S2206P |
probably benign |
Het |
| Dtl |
T |
C |
1: 191,293,658 (GRCm39) |
|
probably null |
Het |
| Fam186b |
T |
C |
15: 99,184,852 (GRCm39) |
T24A |
probably benign |
Het |
| Fbxw21 |
A |
G |
9: 108,990,984 (GRCm39) |
V25A |
probably benign |
Het |
| Gins1 |
T |
C |
2: 150,754,758 (GRCm39) |
S45P |
probably benign |
Het |
| Gtpbp2 |
T |
A |
17: 46,476,869 (GRCm39) |
V349D |
probably damaging |
Het |
| Hyal5 |
G |
T |
6: 24,876,792 (GRCm39) |
D222Y |
probably damaging |
Het |
| Itgal |
A |
G |
7: 126,900,060 (GRCm39) |
|
probably null |
Het |
| Klk14 |
A |
G |
7: 43,343,377 (GRCm39) |
|
probably null |
Het |
| Lama1 |
T |
A |
17: 68,117,404 (GRCm39) |
L2518Q |
possibly damaging |
Het |
| Lrrc2 |
G |
A |
9: 110,808,555 (GRCm39) |
G264D |
probably benign |
Het |
| Ltbp4 |
A |
G |
7: 27,022,245 (GRCm39) |
S893P |
probably damaging |
Het |
| Mast4 |
G |
A |
13: 102,875,771 (GRCm39) |
P1107L |
probably damaging |
Het |
| Mbd1 |
T |
A |
18: 74,408,490 (GRCm39) |
|
probably null |
Het |
| Naip2 |
A |
T |
13: 100,291,529 (GRCm39) |
D1136E |
probably benign |
Het |
| Naip2 |
G |
A |
13: 100,291,537 (GRCm39) |
|
probably benign |
Het |
| Ncan |
G |
A |
8: 70,562,848 (GRCm39) |
T470I |
probably benign |
Het |
| Npy1r |
A |
T |
8: 67,156,813 (GRCm39) |
I78F |
probably damaging |
Het |
| Or10q1b |
A |
T |
19: 13,682,889 (GRCm39) |
M233L |
probably benign |
Het |
| Or8b52 |
G |
A |
9: 38,576,573 (GRCm39) |
T189M |
probably damaging |
Het |
| Palb2 |
A |
T |
7: 121,710,061 (GRCm39) |
|
probably null |
Het |
| Pax3 |
T |
C |
1: 78,080,121 (GRCm39) |
T422A |
probably benign |
Het |
| Pebp1 |
A |
T |
5: 117,424,229 (GRCm39) |
D72E |
possibly damaging |
Het |
| Pnliprp1 |
A |
T |
19: 58,728,901 (GRCm39) |
T363S |
probably benign |
Het |
| Rbm44 |
G |
A |
1: 91,084,565 (GRCm39) |
|
probably null |
Het |
| Rbm47 |
T |
A |
5: 66,182,358 (GRCm39) |
Y425F |
probably benign |
Het |
| Robo3 |
G |
T |
9: 37,340,957 (GRCm39) |
A83E |
probably damaging |
Het |
| Rrm1 |
A |
G |
7: 102,105,721 (GRCm39) |
Y279C |
probably damaging |
Het |
| Rslcan18 |
A |
T |
13: 67,256,121 (GRCm39) |
|
probably benign |
Het |
| Scara5 |
C |
A |
14: 65,968,314 (GRCm39) |
Q196K |
probably benign |
Het |
| Setd1b |
C |
T |
5: 123,301,210 (GRCm39) |
|
probably benign |
Het |
| Siah1a |
A |
G |
8: 87,451,869 (GRCm39) |
F205S |
probably damaging |
Het |
| Smr2 |
AT |
ATT |
5: 88,256,683 (GRCm39) |
|
probably null |
Het |
| Ssu72 |
A |
G |
4: 155,815,814 (GRCm39) |
D86G |
probably benign |
Het |
| St7 |
G |
T |
6: 17,886,110 (GRCm39) |
K357N |
probably damaging |
Het |
| Sv2b |
G |
A |
7: 74,797,425 (GRCm39) |
T323I |
probably damaging |
Het |
| Syt1 |
T |
C |
10: 108,340,361 (GRCm39) |
N319S |
probably benign |
Het |
| Tanc1 |
T |
A |
2: 59,621,995 (GRCm39) |
F371L |
probably damaging |
Het |
| Tcf20 |
C |
A |
15: 82,739,693 (GRCm39) |
G586V |
probably benign |
Het |
| Tg |
T |
C |
15: 66,601,534 (GRCm39) |
|
probably null |
Het |
| Tyk2 |
A |
T |
9: 21,026,758 (GRCm39) |
N620K |
probably benign |
Het |
| Ube2j1 |
T |
A |
4: 33,045,116 (GRCm39) |
S130T |
probably benign |
Het |
| Ubr2 |
G |
T |
17: 47,243,418 (GRCm39) |
P1696H |
probably damaging |
Het |
| Ubr5 |
A |
T |
15: 38,041,085 (GRCm39) |
D266E |
probably damaging |
Het |
| Vipr2 |
A |
G |
12: 116,107,892 (GRCm39) |
T426A |
probably benign |
Het |
| Vmn2r104 |
A |
T |
17: 20,262,477 (GRCm39) |
W218R |
probably damaging |
Het |
| Vmn2r83 |
T |
A |
10: 79,314,956 (GRCm39) |
N401K |
probably damaging |
Het |
| Vwf |
A |
G |
6: 125,632,214 (GRCm39) |
E82G |
unknown |
Het |
| Vwf |
T |
A |
6: 125,640,534 (GRCm39) |
Y2323* |
probably null |
Het |
| Wdr76 |
T |
G |
2: 121,359,402 (GRCm39) |
V329G |
probably damaging |
Het |
| Zan |
A |
G |
5: 137,460,214 (GRCm39) |
C1226R |
unknown |
Het |
| Zbtb16 |
G |
T |
9: 48,743,572 (GRCm39) |
Q247K |
probably damaging |
Het |
| Zfp541 |
T |
C |
7: 15,812,640 (GRCm39) |
V431A |
possibly damaging |
Het |
|
| Other mutations in Dicer1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00943:Dicer1
|
APN |
12 |
104,663,031 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
IGL01061:Dicer1
|
APN |
12 |
104,672,586 (GRCm39) |
missense |
probably null |
0.75 |
|
IGL01527:Dicer1
|
APN |
12 |
104,657,869 (GRCm39) |
nonsense |
probably null |
|
|
IGL01597:Dicer1
|
APN |
12 |
104,671,469 (GRCm39) |
nonsense |
probably null |
|
|
IGL01636:Dicer1
|
APN |
12 |
104,688,500 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01717:Dicer1
|
APN |
12 |
104,669,046 (GRCm39) |
nonsense |
probably null |
|
|
IGL01765:Dicer1
|
APN |
12 |
104,672,999 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01871:Dicer1
|
APN |
12 |
104,670,439 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02316:Dicer1
|
APN |
12 |
104,668,812 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02317:Dicer1
|
APN |
12 |
104,663,279 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02539:Dicer1
|
APN |
12 |
104,663,294 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL02544:Dicer1
|
APN |
12 |
104,681,091 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02664:Dicer1
|
APN |
12 |
104,671,388 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02667:Dicer1
|
APN |
12 |
104,681,165 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03353:Dicer1
|
APN |
12 |
104,679,366 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03377:Dicer1
|
APN |
12 |
104,678,456 (GRCm39) |
missense |
probably damaging |
0.98 |
|
everest
|
UTSW |
12 |
104,671,387 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4480001:Dicer1
|
UTSW |
12 |
104,662,803 (GRCm39) |
missense |
probably benign |
|
|
R0032:Dicer1
|
UTSW |
12 |
104,671,057 (GRCm39) |
nonsense |
probably null |
|
|
R0032:Dicer1
|
UTSW |
12 |
104,671,057 (GRCm39) |
nonsense |
probably null |
|
|
R0219:Dicer1
|
UTSW |
12 |
104,658,384 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0242:Dicer1
|
UTSW |
12 |
104,668,710 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0242:Dicer1
|
UTSW |
12 |
104,668,710 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0385:Dicer1
|
UTSW |
12 |
104,670,433 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0402:Dicer1
|
UTSW |
12 |
104,697,323 (GRCm39) |
missense |
probably benign |
0.04 |
|
R0426:Dicer1
|
UTSW |
12 |
104,668,801 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0453:Dicer1
|
UTSW |
12 |
104,668,889 (GRCm39) |
missense |
probably benign |
|
|
R0502:Dicer1
|
UTSW |
12 |
104,671,319 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0507:Dicer1
|
UTSW |
12 |
104,657,917 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0511:Dicer1
|
UTSW |
12 |
104,669,100 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R0523:Dicer1
|
UTSW |
12 |
104,668,750 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0559:Dicer1
|
UTSW |
12 |
104,672,560 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0600:Dicer1
|
UTSW |
12 |
104,673,123 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0707:Dicer1
|
UTSW |
12 |
104,673,144 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1225:Dicer1
|
UTSW |
12 |
104,657,866 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1351:Dicer1
|
UTSW |
12 |
104,695,401 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1449:Dicer1
|
UTSW |
12 |
104,695,502 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R1642:Dicer1
|
UTSW |
12 |
104,679,415 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1651:Dicer1
|
UTSW |
12 |
104,675,064 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1658:Dicer1
|
UTSW |
12 |
104,666,673 (GRCm39) |
missense |
probably benign |
|
|
R1815:Dicer1
|
UTSW |
12 |
104,688,410 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1816:Dicer1
|
UTSW |
12 |
104,688,410 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1927:Dicer1
|
UTSW |
12 |
104,669,143 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R2113:Dicer1
|
UTSW |
12 |
104,679,473 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2129:Dicer1
|
UTSW |
12 |
104,688,290 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2157:Dicer1
|
UTSW |
12 |
104,669,208 (GRCm39) |
missense |
probably benign |
0.17 |
|
R2202:Dicer1
|
UTSW |
12 |
104,697,297 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R2203:Dicer1
|
UTSW |
12 |
104,697,297 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R2243:Dicer1
|
UTSW |
12 |
104,696,447 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4237:Dicer1
|
UTSW |
12 |
104,695,487 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R4419:Dicer1
|
UTSW |
12 |
104,671,373 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4482:Dicer1
|
UTSW |
12 |
104,672,536 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4564:Dicer1
|
UTSW |
12 |
104,671,010 (GRCm39) |
nonsense |
probably null |
|
|
R4776:Dicer1
|
UTSW |
12 |
104,658,705 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4834:Dicer1
|
UTSW |
12 |
104,662,850 (GRCm39) |
missense |
probably benign |
0.44 |
|
R4904:Dicer1
|
UTSW |
12 |
104,679,325 (GRCm39) |
missense |
probably benign |
|
|
R5202:Dicer1
|
UTSW |
12 |
104,660,990 (GRCm39) |
nonsense |
probably null |
|
|
R5272:Dicer1
|
UTSW |
12 |
104,670,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5363:Dicer1
|
UTSW |
12 |
104,669,410 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5717:Dicer1
|
UTSW |
12 |
104,671,387 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6381:Dicer1
|
UTSW |
12 |
104,662,721 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6479:Dicer1
|
UTSW |
12 |
104,662,982 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6956:Dicer1
|
UTSW |
12 |
104,697,282 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7234:Dicer1
|
UTSW |
12 |
104,675,108 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7401:Dicer1
|
UTSW |
12 |
104,678,537 (GRCm39) |
missense |
probably benign |
|
|
R7407:Dicer1
|
UTSW |
12 |
104,688,610 (GRCm39) |
nonsense |
probably null |
|
|
R7471:Dicer1
|
UTSW |
12 |
104,660,969 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7699:Dicer1
|
UTSW |
12 |
104,671,429 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7768:Dicer1
|
UTSW |
12 |
104,672,956 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7831:Dicer1
|
UTSW |
12 |
104,675,059 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7998:Dicer1
|
UTSW |
12 |
104,670,328 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8010:Dicer1
|
UTSW |
12 |
104,658,391 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8061:Dicer1
|
UTSW |
12 |
104,669,077 (GRCm39) |
nonsense |
probably null |
|
|
R8213:Dicer1
|
UTSW |
12 |
104,668,952 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8261:Dicer1
|
UTSW |
12 |
104,657,865 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8419:Dicer1
|
UTSW |
12 |
104,668,936 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8708:Dicer1
|
UTSW |
12 |
104,694,704 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R8851:Dicer1
|
UTSW |
12 |
104,690,300 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R9220:Dicer1
|
UTSW |
12 |
104,679,415 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9371:Dicer1
|
UTSW |
12 |
104,670,991 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9387:Dicer1
|
UTSW |
12 |
104,695,499 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R9505:Dicer1
|
UTSW |
12 |
104,697,297 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9636:Dicer1
|
UTSW |
12 |
104,688,406 (GRCm39) |
nonsense |
probably null |
|
|
R9682:Dicer1
|
UTSW |
12 |
104,672,484 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0018:Dicer1
|
UTSW |
12 |
104,663,193 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1176:Dicer1
|
UTSW |
12 |
104,697,279 (GRCm39) |
missense |
probably null |
0.97 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCTGTGAGAGATGACTCCAGCAAC -3'
(R):5'- CCTGCCTCACTTGACCTGAAGTATG -3'
Sequencing Primer
(F):5'- GCATACAAACAAGGAATGCTTTGC -3'
(R):5'- CCTATGAGCGACAGCAGTTTG -3'
|
| Posted On |
2014-04-13 |
Incidental Mutation