Mutagenetix > Incidental Mutation

Incidental Mutation 'R1579:1700037C18Rik'

171321

Institutional Source

Beutler Lab

Gene Symbol

1700037C18Rik

Ensembl Gene

ENSMUSG00000005983

Gene Name

RIKEN cDNA 1700037C18 gene

Synonyms

MMRRC Submission

039616-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1579 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

3723662-3726553 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 3724039 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 162 (R162G)

Ref Sequence

ENSEMBL: ENSMUSP00000111525 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006138] [ENSMUST00000006139] [ENSMUST00000040881] [ENSMUST00000115859] [ENSMUST00000115860] [ENSMUST00000123235] [ENSMUST00000124849] [ENSMUST00000177323] [ENSMUST00000186375] [ENSMUST00000143537] [ENSMUST00000175809] [ENSMUST00000177221] [ENSMUST00000139294] [ENSMUST00000176233] [ENSMUST00000176224] [ENSMUST00000150655] [ENSMUST00000145150] [ENSMUST00000176625]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000006138

SMART Domains

Protein: ENSMUSP00000006138
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_7	50	157	4.2e-11	PFAM
Pfam:Acetyltransf_1	57	156	4.2e-15	PFAM
Pfam:FR47	77	164	8.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000006139

SMART Domains

Protein: ENSMUSP00000006139
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	16	139	7.3e-70	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000040881

SMART Domains

Protein: ENSMUSP00000043397
Gene: ENSMUSG00000014232

Domain	Start	End	E-Value	Type
Pfam:Cluap1	14	283	2.5e-121	PFAM
low complexity region	297	307	N/A	INTRINSIC
low complexity region	310	330	N/A	INTRINSIC
low complexity region	360	388	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000115859
AA Change: R162G

PolyPhen 2 Score 0.386 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000111525
Gene: ENSMUSG00000005983
AA Change: R162G

Domain	Start	End	E-Value	Type
Pfam:DUF4644	2	162	4.7e-89	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115860

SMART Domains

Protein: ENSMUSP00000111526
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_7	50	157	4.2e-11	PFAM
Pfam:Acetyltransf_1	57	156	4.2e-15	PFAM
Pfam:FR47	77	164	8.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000123235

SMART Domains

Protein: ENSMUSP00000135233
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	7	67	1.5e-38	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000124849

SMART Domains

Protein: ENSMUSP00000119490
Gene: ENSMUSG00000014232

Domain	Start	End	E-Value	Type
Pfam:Cluap1	3	206	8.7e-93	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000177323
AA Change: R166G

PolyPhen 2 Score 0.198 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000135766
Gene: ENSMUSG00000005983
AA Change: R166G

Domain	Start	End	E-Value	Type
Pfam:DUF4644	6	166	1.5e-93	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146935

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137745

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000177519

Predicted Effect

probably benign
Transcript: ENSMUST00000186375

SMART Domains

Protein: ENSMUSP00000140031
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_7	50	157	4.2e-11	PFAM
Pfam:Acetyltransf_1	57	156	4.2e-15	PFAM
Pfam:FR47	77	164	8.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000143537

SMART Domains

Protein: ENSMUSP00000135188
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
SCOP:d1cjwa_	10	113	9e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000175809

SMART Domains

Protein: ENSMUSP00000135810
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
SCOP:d1qsma_	12	67	4e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000177221

SMART Domains

Protein: ENSMUSP00000134800
Gene: ENSMUSG00000005983

Domain	Start	End	E-Value	Type
Pfam:DUF4644	13	144	7.2e-75	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000139294

Predicted Effect

probably benign
Transcript: ENSMUST00000176233

SMART Domains

Protein: ENSMUSP00000135826
Gene: ENSMUSG00000093575

Domain	Start	End	E-Value	Type
Pfam:Cluap1	119	282	2.8e-76	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176224

SMART Domains

Protein: ENSMUSP00000135152
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
SCOP:d1cjwa_	10	112	2e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000150655

SMART Domains

Protein: ENSMUSP00000135206
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_7	50	157	4.2e-11	PFAM
Pfam:Acetyltransf_1	57	156	4.2e-15	PFAM
Pfam:FR47	77	164	8.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000145150

SMART Domains

Protein: ENSMUSP00000116855
Gene: ENSMUSG00000014232

Domain	Start	End	E-Value	Type
Pfam:Cluap1	3	188	9.9e-86	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176625

SMART Domains

Protein: ENSMUSP00000134768
Gene: ENSMUSG00000005982

Domain	Start	End	E-Value	Type
Pfam:Acetyltransf_1	4	91	1.1e-13	PFAM
Pfam:Acetyltransf_7	7	92	1e-10	PFAM
Pfam:FR47	12	99	1.8e-9	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000193513

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000195807

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 96.0%
20x: 91.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl4	T	A	3: 95,592,807 (GRCm39)		probably benign	Het
Adgrv1	A	T	13: 81,711,898 (GRCm39)	L306H	probably damaging	Het
Aknad1	T	A	3: 108,659,452 (GRCm39)	Y155*	probably null	Het
Aldh6a1	C	T	12: 84,488,622 (GRCm39)	R88H	possibly damaging	Het
Apc2	G	C	10: 80,147,179 (GRCm39)	K715N	probably damaging	Het
Arhgap45	G	A	10: 79,864,811 (GRCm39)	V798M	probably damaging	Het
Calcrl	T	C	2: 84,163,881 (GRCm39)	T437A	probably benign	Het
Cdan1	A	G	2: 120,561,220 (GRCm39)	F183L	probably damaging	Het
Chmp7	C	T	14: 69,956,899 (GRCm39)	M336I	probably benign	Het
Cntnap4	A	G	8: 113,608,462 (GRCm39)	E1294G	possibly damaging	Het
Crybg3	C	A	16: 59,350,561 (GRCm39)	G2607V	probably damaging	Het
Dhx29	G	T	13: 113,072,132 (GRCm39)		probably null	Het
Dmrtb1	T	A	4: 107,541,322 (GRCm39)	H13L	probably damaging	Het
Echdc2	A	G	4: 108,031,006 (GRCm39)	M162V	probably benign	Het
Entpd8	A	G	2: 24,974,986 (GRCm39)	D439G	possibly damaging	Het
Fastkd2	C	G	1: 63,785,046 (GRCm39)	H477Q	probably null	Het
Fbrs	A	G	7: 127,084,529 (GRCm39)	E517G	probably damaging	Het
Gchfr	A	G	2: 119,002,502 (GRCm39)	T71A	possibly damaging	Het
Hecw1	A	T	13: 14,552,492 (GRCm39)	C35S	probably damaging	Het
Izumo1r	C	T	9: 14,813,098 (GRCm39)	R58H	probably benign	Het
Kif13a	T	C	13: 46,906,332 (GRCm39)	E537G	possibly damaging	Het
Kif13b	G	A	14: 65,019,790 (GRCm39)		probably null	Het
Kremen1	CGGG	CGGGGGG	11: 5,151,791 (GRCm39)		probably benign	Het
Lnpk	A	T	2: 74,378,340 (GRCm39)	D140E	probably damaging	Het
Ltbp1	A	G	17: 75,559,362 (GRCm39)	M284V	probably benign	Het
Me3	A	T	7: 89,495,050 (GRCm39)	T323S	possibly damaging	Het
Mtus1	A	G	8: 41,535,895 (GRCm39)	V607A	probably damaging	Het
Myh14	A	T	7: 44,305,118 (GRCm39)		probably null	Het
Myo1h	T	A	5: 114,485,496 (GRCm39)	C545*	probably null	Het
Nbn	T	A	4: 15,964,289 (GRCm39)	D121E	probably damaging	Het
Nox4	A	G	7: 87,019,231 (GRCm39)	Y408C	probably damaging	Het
Nup214	C	T	2: 31,924,478 (GRCm39)	S1669F	probably damaging	Het
Or10q1b	A	G	19: 13,682,566 (GRCm39)	D125G	probably damaging	Het
Or52d3	T	A	7: 104,229,268 (GRCm39)	Y138*	probably null	Het
Or5w20	G	A	2: 87,727,286 (GRCm39)	A248T	probably benign	Het
Osbpl5	T	C	7: 143,262,939 (GRCm39)	T150A	possibly damaging	Het
Pgap3	C	A	11: 98,280,879 (GRCm39)	M265I	probably benign	Het
Pirb	A	T	7: 3,720,637 (GRCm39)	L287Q	probably benign	Het
Pkd2l2	A	T	18: 34,560,446 (GRCm39)	N351I	possibly damaging	Het
Prkdc	T	A	16: 15,493,192 (GRCm39)	Y700N	probably benign	Het
Pzp	A	G	6: 128,500,931 (GRCm39)		probably null	Het
Rfwd3	C	T	8: 112,014,874 (GRCm39)	R326Q	probably damaging	Het
Rptor	A	T	11: 119,786,827 (GRCm39)	Q1264L	probably benign	Het
Scnn1a	T	C	6: 125,299,103 (GRCm39)	F61S	probably damaging	Het
Tenm2	C	A	11: 35,997,610 (GRCm39)	W825C	probably damaging	Het
Tex264	A	T	9: 106,559,116 (GRCm39)	I70N	possibly damaging	Het
Tns2	G	T	15: 102,019,645 (GRCm39)	D504Y	probably damaging	Het
Trappc14	T	C	5: 138,260,128 (GRCm39)	I338V	probably benign	Het
Trpc2	T	A	7: 101,733,447 (GRCm39)	F132Y	probably damaging	Het
Trpm4	A	G	7: 44,958,021 (GRCm39)	F816S	probably damaging	Het
Uqcc1	G	A	2: 155,763,641 (GRCm39)	Q5*	probably null	Het
Usp36	G	T	11: 118,175,771 (GRCm39)	T130N	probably damaging	Het
Vav1	A	G	17: 57,604,252 (GRCm39)	M165V	probably benign	Het
Vmn1r64	A	T	7: 5,886,803 (GRCm39)	F247I	probably damaging	Het
Vmn2r26	G	C	6: 124,016,706 (GRCm39)	R390P	probably benign	Het
Vmn2r57	G	T	7: 41,049,548 (GRCm39)	H734N	probably benign	Het
Wfdc16	G	T	2: 164,477,843 (GRCm39)	H69N	possibly damaging	Het
Zfp316	C	T	5: 143,239,317 (GRCm39)	E901K	probably damaging	Het
Zfp334	T	C	2: 165,223,719 (GRCm39)	E108G	probably damaging	Het
Zfp407	T	C	18: 84,227,763 (GRCm39)	S1949G	probably benign	Het
Zfp408	A	G	2: 91,476,473 (GRCm39)	L227P	probably benign	Het
Zfp560	T	C	9: 20,259,287 (GRCm39)	H525R	possibly damaging	Het
Zfp609	G	A	9: 65,611,754 (GRCm39)	A403V	possibly damaging	Het

Other mutations in 1700037C18Rik

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02275:1700037C18Rik	APN	16	3,724,146 (GRCm39)	missense	probably damaging	1.00
R0485:1700037C18Rik	UTSW	16	3,725,511 (GRCm39)	missense	probably damaging	0.99
R1643:1700037C18Rik	UTSW	16	3,724,942 (GRCm39)	nonsense	probably null
R2181:1700037C18Rik	UTSW	16	3,724,950 (GRCm39)	missense	possibly damaging	0.53
R8191:1700037C18Rik	UTSW	16	3,724,918 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGGCATGGGCATTCCATTTCTTC -3'
(R):5'- GGACCTTGGACAACTTTGCCTCAG -3'

Sequencing Primer
(F):5'- TTTCCCCAGACTAGCCCAGG -3'
(R):5'- caactttgcctcagttccttc -3'

Posted On

2014-04-13