Mutagenetix > Incidental Mutation

Incidental Mutation 'R1539:Or6c88'

171578

Institutional Source

Beutler Lab

Gene Symbol

Or6c88

Ensembl Gene

ENSMUSG00000044293

Gene Name

olfactory receptor family 6 subfamily C member 88

Synonyms

MOR114-11, Olfr794, GA_x6K02T2PULF-11248702-11249664

MMRRC Submission

039578-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.062) question?

Stock #

R1539 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

129406526-129407488 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 129406640 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Arginine at position 39 (G39R)

Ref Sequence

ENSEMBL: ENSMUSP00000145301 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000059957] [ENSMUST00000204820]

AlphaFold

Q8VF26

Predicted Effect

probably damaging
Transcript: ENSMUST00000059957
AA Change: G39R

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000049790
Gene: ENSMUSG00000044293
AA Change: G39R

Domain	Start	End	E-Value	Type
Pfam:7tm_4	29	306	2.8e-49	PFAM
Pfam:7tm_1	39	288	2e-22	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000204820
AA Change: G39R

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000145301
Gene: ENSMUSG00000044293
AA Change: G39R

Domain	Start	End	E-Value	Type
Pfam:7tm_4	29	306	2.8e-49	PFAM
Pfam:7tm_1	39	288	2e-22	PFAM

Coding Region Coverage

1x: 99.0%
3x: 97.9%
10x: 94.9%
20x: 88.0%

Validation Efficiency

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 99 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	T	A	13: 81,652,097 (GRCm39)		probably null	Het
Adh7	A	C	3: 137,929,716 (GRCm39)	T131P	possibly damaging	Het
Agxt	G	A	1: 93,065,701 (GRCm39)	G190D	probably damaging	Het
AI182371	A	G	2: 34,978,815 (GRCm39)	I193T	probably damaging	Het
Akna	T	A	4: 63,297,547 (GRCm39)	T836S	probably benign	Het
Alox12	T	C	11: 70,144,069 (GRCm39)		probably null	Het
Anapc2	C	A	2: 25,163,075 (GRCm39)	T104K	probably benign	Het
Ank1	T	C	8: 23,583,935 (GRCm39)	L346P	probably damaging	Het
Ankfn1	A	T	11: 89,332,217 (GRCm39)	I443N	probably damaging	Het
Arhgef17	G	A	7: 100,539,680 (GRCm39)	T1066I	probably damaging	Het
Atg2a	C	A	19: 6,296,801 (GRCm39)		probably null	Het
Bpifb5	T	A	2: 154,065,776 (GRCm39)	H24Q	probably benign	Het
Brd9	A	G	13: 74,092,862 (GRCm39)	E283G	probably damaging	Het
Cadm2	C	A	16: 66,581,727 (GRCm39)	V184F	probably damaging	Het
Casr	A	G	16: 36,315,499 (GRCm39)	V857A	probably benign	Het
Ccdc18	A	T	5: 108,339,843 (GRCm39)	Q796L	probably damaging	Het
Cep290	T	C	10: 100,332,690 (GRCm39)	V263A	probably benign	Het
Clec10a	A	T	11: 70,060,645 (GRCm39)	N167Y	probably damaging	Het
Cog1	A	G	11: 113,543,058 (GRCm39)	I189V	possibly damaging	Het
Commd2	A	G	3: 57,554,269 (GRCm39)	I144T	probably benign	Het
Cse1l	A	G	2: 166,768,292 (GRCm39)	T197A	probably benign	Het
Csmd3	A	T	15: 47,683,794 (GRCm39)	S1783R	probably benign	Het
Cxxc1	T	C	18: 74,352,278 (GRCm39)	V334A	possibly damaging	Het
Dennd2d	A	G	3: 106,394,236 (GRCm39)	I39V	probably benign	Het
Dgkz	G	A	2: 91,768,405 (GRCm39)	P734S	probably damaging	Het
Diaph3	T	C	14: 86,893,916 (GRCm39)	D31G	probably damaging	Het
Dlec1	T	C	9: 118,956,518 (GRCm39)	S731P	probably benign	Het
Dmac2l	G	A	12: 69,787,845 (GRCm39)	D94N	probably benign	Het
Dnah11	T	C	12: 117,894,991 (GRCm39)	R3619G	probably benign	Het
Doc2b	A	G	11: 75,662,783 (GRCm39)	L405P	probably damaging	Het
Dock3	A	T	9: 106,829,563 (GRCm39)	I1117N	probably damaging	Het
Dock3	G	A	9: 106,874,112 (GRCm39)	A453V	probably benign	Het
Ece2	T	A	16: 20,461,263 (GRCm39)	I474N	probably damaging	Het
Etv4	A	T	11: 101,662,513 (GRCm39)		probably null	Het
Fam171b	A	T	2: 83,710,442 (GRCm39)	M705L	probably benign	Het
Frem2	T	C	3: 53,561,631 (GRCm39)	K959E	probably benign	Het
Fyn	T	C	10: 39,408,066 (GRCm39)	M251T	possibly damaging	Het
Galnt13	G	A	2: 54,747,869 (GRCm39)	G250E	probably damaging	Het
Ggh	T	C	4: 20,054,204 (GRCm39)		probably null	Het
Glcci1	A	G	6: 8,591,620 (GRCm39)	E222G	probably damaging	Het
Gm1968	G	A	16: 29,777,659 (GRCm39)		noncoding transcript	Het
Gm3604	T	A	13: 62,519,414 (GRCm39)	I52F	possibly damaging	Het
Gm43302	T	C	5: 105,422,635 (GRCm39)	I466V	probably benign	Het
Gm9789	T	C	16: 88,955,034 (GRCm39)	S48P	unknown	Het
Gpat3	A	T	5: 101,031,254 (GRCm39)	Y136F	probably benign	Het
Gpr171	T	C	3: 59,005,142 (GRCm39)	D211G	possibly damaging	Het
Grep1	T	A	17: 23,936,118 (GRCm39)		probably benign	Het
Hs3st1	T	C	5: 39,771,791 (GRCm39)	K284R	probably benign	Het
Htr2a	C	T	14: 74,882,608 (GRCm39)	A198V	possibly damaging	Het
Ice1	C	A	13: 70,754,023 (GRCm39)	D688Y	probably damaging	Het
Jade1	T	C	3: 41,559,431 (GRCm39)	M504T	probably benign	Het
Lrp1	T	C	10: 127,420,250 (GRCm39)		probably null	Het
Lsr	A	T	7: 30,671,517 (GRCm39)	I72N	possibly damaging	Het
Magel2	G	A	7: 62,028,557 (GRCm39)	R487H	possibly damaging	Het
Mertk	A	G	2: 128,624,446 (GRCm39)	D619G	probably benign	Het
Myo1b	A	T	1: 51,838,722 (GRCm39)	V245E	probably damaging	Het
Myrip	T	A	9: 120,253,689 (GRCm39)	L254Q	probably benign	Het
Nav3	A	G	10: 109,603,031 (GRCm39)	S1173P	probably damaging	Het
Ncoa7	T	C	10: 30,647,725 (GRCm39)	Y17C	probably damaging	Het
Ncor2	T	C	5: 125,187,003 (GRCm39)	E7G	probably benign	Het
Ninl	A	G	2: 150,817,867 (GRCm39)	V99A	probably damaging	Het
Noct	G	T	3: 51,155,333 (GRCm39)	E34*	probably null	Het
Notch1	A	T	2: 26,362,125 (GRCm39)	Y1043*	probably null	Het
Or10v1	T	C	19: 11,873,855 (GRCm39)	S157P	possibly damaging	Het
Or13a21	T	A	7: 139,999,326 (GRCm39)	Y120F	probably benign	Het
Or2d3	A	G	7: 106,490,483 (GRCm39)	Y278H	probably damaging	Het
Pde7b	C	A	10: 20,355,432 (GRCm39)	R104L	possibly damaging	Het
Pkn1	C	A	8: 84,396,966 (GRCm39)	R890L	possibly damaging	Het
Podn	A	T	4: 107,878,764 (GRCm39)	Y368N	probably damaging	Het
Polr1b	G	A	2: 128,960,019 (GRCm39)		probably null	Het
Ppp1r3c	A	T	19: 36,711,361 (GRCm39)	F136L	probably benign	Het
Ppp2ca	T	A	11: 52,011,800 (GRCm39)	F260Y	probably damaging	Het
Prss39	A	G	1: 34,537,616 (GRCm39)	S27G	possibly damaging	Het
Ptch1	A	G	13: 63,689,101 (GRCm39)	V340A	probably benign	Het
Ranbp17	T	C	11: 33,247,394 (GRCm39)	I246V	probably damaging	Het
Rilpl1	T	A	5: 124,653,618 (GRCm39)	D181V	probably damaging	Het
Sdk1	T	A	5: 142,080,354 (GRCm39)	V1282D	probably damaging	Het
Sh3rf2	T	C	18: 42,282,887 (GRCm39)	S514P	probably damaging	Het
Slc35f2	A	T	9: 53,716,992 (GRCm39)	I252F	possibly damaging	Het
Slc7a1	A	G	5: 148,272,403 (GRCm39)	Y425H	possibly damaging	Het
Spaca4	G	T	7: 45,374,984 (GRCm39)		probably benign	Het
Spata31d1b	T	C	13: 59,863,733 (GRCm39)	S294P	possibly damaging	Het
Ssh1	T	G	5: 114,090,064 (GRCm39)	T342P	probably damaging	Het
Stk10	T	A	11: 32,483,440 (GRCm39)	S13T	possibly damaging	Het
Tbx1	G	T	16: 18,402,843 (GRCm39)	D214E	probably benign	Het
Tdp1	A	G	12: 99,878,571 (GRCm39)	E453G	probably damaging	Het
Tlr1	T	C	5: 65,084,319 (GRCm39)	Y86C	probably damaging	Het
Tmem241	A	T	18: 12,176,297 (GRCm39)	C124S	possibly damaging	Het
Trp63	A	G	16: 25,703,599 (GRCm39)	M516V	probably benign	Het
Ttc28	T	C	5: 111,248,677 (GRCm39)	V210A	possibly damaging	Het
Tut1	C	T	19: 8,942,850 (GRCm39)	R646W	probably benign	Het
Ubald1	C	T	16: 4,694,261 (GRCm39)	E49K	possibly damaging	Het
Usp28	T	C	9: 48,949,096 (GRCm39)	Y897H	probably benign	Het
Vmn2r27	A	C	6: 124,168,730 (GRCm39)	F800C	probably damaging	Het
Vmn2r83	T	A	10: 79,327,759 (GRCm39)	M789K	probably damaging	Het
Vwa8	A	G	14: 79,300,002 (GRCm39)	D945G	probably benign	Het
Wdhd1	T	A	14: 47,482,507 (GRCm39)	K947N	possibly damaging	Het
Wdr12	A	T	1: 60,123,007 (GRCm39)		probably null	Het
Xrra1	A	T	7: 99,520,564 (GRCm39)	E57V	probably damaging	Het

Other mutations in Or6c88

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01867:Or6c88	APN	10	129,406,696 (GRCm39)	missense	possibly damaging	0.95
IGL02157:Or6c88	APN	10	129,407,019 (GRCm39)	missense	probably damaging	1.00
IGL02804:Or6c88	APN	10	129,407,306 (GRCm39)	missense	possibly damaging	0.60
IGL02833:Or6c88	APN	10	129,406,619 (GRCm39)	missense	probably benign	0.26
IGL02930:Or6c88	APN	10	129,407,184 (GRCm39)	missense	probably damaging	1.00
IGL03038:Or6c88	APN	10	129,406,790 (GRCm39)	missense	probably benign	0.07
G4846:Or6c88	UTSW	10	129,407,039 (GRCm39)	missense	probably damaging	1.00
R1737:Or6c88	UTSW	10	129,406,697 (GRCm39)	missense	probably damaging	1.00
R1845:Or6c88	UTSW	10	129,407,217 (GRCm39)	missense	probably damaging	1.00
R2198:Or6c88	UTSW	10	129,406,915 (GRCm39)	nonsense	probably null
R3086:Or6c88	UTSW	10	129,407,276 (GRCm39)	missense	probably damaging	1.00
R4960:Or6c88	UTSW	10	129,406,895 (GRCm39)	missense	probably damaging	1.00
R5938:Or6c88	UTSW	10	129,407,396 (GRCm39)	missense	probably damaging	1.00
R6326:Or6c88	UTSW	10	129,406,571 (GRCm39)	missense	possibly damaging	0.74
R6598:Or6c88	UTSW	10	129,407,238 (GRCm39)	missense	probably damaging	1.00
R7034:Or6c88	UTSW	10	129,406,941 (GRCm39)	missense	possibly damaging	0.91
R7066:Or6c88	UTSW	10	129,407,373 (GRCm39)	missense	probably damaging	1.00
R7226:Or6c88	UTSW	10	129,406,584 (GRCm39)	missense	probably benign	0.01
R7324:Or6c88	UTSW	10	129,406,718 (GRCm39)	missense	probably damaging	1.00
R7408:Or6c88	UTSW	10	129,406,493 (GRCm39)	start gained	probably benign
R7779:Or6c88	UTSW	10	129,407,180 (GRCm39)	missense	probably damaging	1.00
R8733:Or6c88	UTSW	10	129,406,579 (GRCm39)	missense	possibly damaging	0.90
R8891:Or6c88	UTSW	10	129,407,046 (GRCm39)	missense	probably damaging	0.99
R8931:Or6c88	UTSW	10	129,406,550 (GRCm39)	missense	probably benign	0.09
R9310:Or6c88	UTSW	10	129,406,687 (GRCm39)	missense	probably benign	0.00
R9681:Or6c88	UTSW	10	129,406,664 (GRCm39)	missense	probably damaging	1.00
Z1176:Or6c88	UTSW	10	129,407,105 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GAGATGGTAGCTTAATGCACCAAGGAA -3'
(R):5'- GACTGGCACAAGCATTGTATGTTATGG -3'

Sequencing Primer
(F):5'- tgatttctggtcttgatcattacttc -3'
(R):5'- CCCCAGTTGATATACTGTACAGG -3'

Posted On

2014-04-13