Mutagenetix > Incidental Mutation

Incidental Mutation 'R1546:Hcn1'

172207

Institutional Source

Beutler Lab

Gene Symbol

Hcn1

Ensembl Gene

ENSMUSG00000021730

Gene Name

hyperpolarization activated cyclic nucleotide gated potassium channel 1

Synonyms

C630013B14Rik, HAC2, hyperpolarization-activated, cyclic nucleotide-gated K+ 1, Bcng1

MMRRC Submission

039585-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1546 (G1)

Quality Score

121

Status

Not validated

Chromosome

Chromosomal Location

117738856-118117564 bp(+) (GRCm39)

Type of Mutation

small insertion (1 aa in frame mutation)

DNA Base Change (assembly)

ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC to ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC at 118112302 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000006991 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006991]

AlphaFold

O88704

PDB Structure

Tetramerization dynamics of the C-terminus underlies isoform-specific cAMP-gating in HCN channels [X-RAY DIFFRACTION]

Predicted Effect

probably benign
Transcript: ENSMUST00000006991

SMART Domains

Protein: ENSMUSP00000006991
Gene: ENSMUSG00000021730

Domain	Start	End	E-Value	Type
Pfam:Ion_trans_N	87	130	8.2e-24	PFAM
Pfam:Ion_trans	131	394	2.1e-23	PFAM
low complexity region	395	406	N/A	INTRINSIC
Blast:cNMP	407	439	4e-13	BLAST
cNMP	464	580	1.95e-22	SMART
low complexity region	639	655	N/A	INTRINSIC
low complexity region	660	680	N/A	INTRINSIC
low complexity region	720	779	N/A	INTRINSIC
low complexity region	878	886	N/A	INTRINSIC

Coding Region Coverage

1x: 99.0%
3x: 98.0%
10x: 95.2%
20x: 88.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The membrane protein encoded by this gene is a hyperpolarization-activated cation channel that contributes to the native pacemaker currents in heart and neurons. The encoded protein can homodimerize or heterodimerize with other pore-forming subunits to form a potassium channel. This channel may act as a receptor for sour tastes. [provided by RefSeq, Oct 2011]
PHENOTYPE: Mice homozygous for disruptions in this allele display learning deficiencies but are otherwise normal. Mice homozygous for another targeted knock-out exhibit deficit in hyperpolarization-activated currents and cold allodynia following partial nerve ligation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2510039O18Rik	T	C	4: 148,026,232 (GRCm39)	S251P	probably damaging	Het
Aaas	C	A	15: 102,255,153 (GRCm39)	R79L	probably benign	Het
Acap2	C	A	16: 30,923,754 (GRCm39)	E657*	probably null	Het
Adgrg5	A	T	8: 95,668,258 (GRCm39)	E441V	probably benign	Het
Alkbh2	C	T	5: 114,262,287 (GRCm39)	E148K	probably damaging	Het
AY358078	C	T	14: 52,057,876 (GRCm39)		probably null	Het
Bco2	A	G	9: 50,461,929 (GRCm39)	V25A	possibly damaging	Het
Bltp1	T	C	3: 36,924,205 (GRCm39)	V10A	possibly damaging	Het
Carf	T	A	1: 60,165,195 (GRCm39)		probably null	Het
Ccdc38	A	T	10: 93,401,741 (GRCm39)	I134L	probably benign	Het
Cgnl1	A	G	9: 71,633,097 (GRCm39)	S85P	probably benign	Het
Ctsl	A	G	13: 64,515,693 (GRCm39)	V126A	probably damaging	Het
Cwc27	A	C	13: 104,938,693 (GRCm39)	S206A	probably damaging	Het
D630045J12Rik	A	G	6: 38,167,590 (GRCm39)	I1004T	probably damaging	Het
Dgki	A	G	6: 37,027,138 (GRCm39)	V401A	probably damaging	Het
Dpp8	C	T	9: 64,970,775 (GRCm39)	H545Y	possibly damaging	Het
Dpy19l1	A	T	9: 24,386,680 (GRCm39)	C205S	probably damaging	Het
Enpp2	C	T	15: 54,709,225 (GRCm39)	E797K	probably benign	Het
Ephb2	C	T	4: 136,498,320 (GRCm39)	R253H	probably damaging	Het
Esrra	T	C	19: 6,897,665 (GRCm39)	T31A	probably benign	Het
Ewsr1	C	A	11: 5,028,574 (GRCm39)		probably benign	Het
Flt4	G	T	11: 49,522,808 (GRCm39)	R475L	probably benign	Het
Gm13547	A	G	2: 29,653,921 (GRCm39)	E138G	possibly damaging	Het
Gm572	A	T	4: 148,751,276 (GRCm39)	R216S	possibly damaging	Het
H2ac8	A	G	13: 23,755,119 (GRCm39)	V55A	probably damaging	Het
Hapln2	T	A	3: 87,931,404 (GRCm39)	Y37F	probably benign	Het
Hhla1	C	T	15: 65,805,176 (GRCm39)	A369T	probably benign	Het
Hmg20a	T	A	9: 56,374,685 (GRCm39)	F14I	possibly damaging	Het
Iqca1l	A	T	5: 24,760,426 (GRCm39)		probably null	Het
Itga2	A	T	13: 114,985,956 (GRCm39)	S940T	possibly damaging	Het
Kcnt2	A	G	1: 140,359,116 (GRCm39)	N377S	probably benign	Het
Kirrel1	C	T	3: 86,996,458 (GRCm39)	M380I	probably null	Het
Lhx6	A	G	2: 35,981,049 (GRCm39)	S298P	probably benign	Het
Lrp2	C	T	2: 69,332,954 (GRCm39)	G1521D	probably damaging	Het
Mogat2	A	G	7: 98,881,766 (GRCm39)	W57R	probably damaging	Het
Ms4a3	T	C	19: 11,610,271 (GRCm39)	N97S	probably benign	Het
Myo1a	A	G	10: 127,548,493 (GRCm39)	D380G	probably damaging	Het
Nufip2	T	A	11: 77,582,432 (GRCm39)	D115E	probably damaging	Het
Ogn	A	T	13: 49,762,809 (GRCm39)	K50N	probably benign	Het
Or5ac20	T	C	16: 59,104,366 (GRCm39)	R165G	probably damaging	Het
Or8c10	A	T	9: 38,278,844 (GRCm39)	M1L	probably benign	Het
Pde8b	G	A	13: 95,182,951 (GRCm39)	T269I	probably damaging	Het
Ppargc1b	A	T	18: 61,443,677 (GRCm39)	D495E	probably damaging	Het
Prdm16	C	A	4: 154,613,117 (GRCm39)	K103N	possibly damaging	Het
Proc	C	T	18: 32,260,463 (GRCm39)	G221S	probably damaging	Het
Pxk	A	G	14: 8,164,091 (GRCm38)	N561S	probably damaging	Het
Rapgef5	A	G	12: 117,610,721 (GRCm39)	N323S	probably benign	Het
Slc6a13	T	G	6: 121,309,333 (GRCm39)	D281E	possibly damaging	Het
Slc8a1	T	C	17: 81,955,676 (GRCm39)	Y454C	probably damaging	Het
Sntg2	C	A	12: 30,338,295 (GRCm39)	L115F	probably damaging	Het
Spata13	A	G	14: 60,993,857 (GRCm39)	D1103G	probably damaging	Het
Supv3l1	G	A	10: 62,268,225 (GRCm39)	A540V	probably benign	Het
Tet1	A	T	10: 62,648,689 (GRCm39)	D1914E	probably damaging	Het
Tmem30a	A	G	9: 79,678,570 (GRCm39)	*329Q	probably null	Het
Tspan5	A	T	3: 138,604,102 (GRCm39)	L162F	probably damaging	Het
Ttn	T	A	2: 76,549,396 (GRCm39)	K31760N	probably damaging	Het
Tyr	A	T	7: 87,087,200 (GRCm39)	D437E	probably benign	Het
Ubr4	T	A	4: 139,144,238 (GRCm39)	L1427*	probably null	Het
Utrn	C	A	10: 12,312,108 (GRCm39)	D616Y	probably damaging	Het
Vcan	A	G	13: 89,841,075 (GRCm39)	S1490P	probably damaging	Het
Vcl	T	A	14: 21,059,018 (GRCm39)	C545S	probably damaging	Het
Vmn2r4	C	T	3: 64,314,309 (GRCm39)	G224D	probably damaging	Het
Vmn2r97	T	A	17: 19,168,110 (GRCm39)	V788E	probably damaging	Het
Vrtn	G	A	12: 84,695,282 (GRCm39)	V11M	probably damaging	Het
Zbtb21	A	T	16: 97,753,227 (GRCm39)	V380D	probably damaging	Het
Zcchc14	G	A	8: 122,331,002 (GRCm39)		probably benign	Het

Other mutations in Hcn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00231:Hcn1	APN	13	118,112,529 (GRCm39)	missense	probably damaging	1.00
IGL00340:Hcn1	APN	13	117,739,513 (GRCm39)	missense	unknown
IGL01161:Hcn1	APN	13	117,793,458 (GRCm39)	missense	unknown
IGL01723:Hcn1	APN	13	118,112,591 (GRCm39)	missense	probably damaging	0.98
IGL02324:Hcn1	APN	13	118,039,422 (GRCm39)	missense	unknown
IGL02491:Hcn1	APN	13	117,946,576 (GRCm39)	missense	unknown
Thump	UTSW	13	118,010,441 (GRCm39)	nonsense	probably null
FR4976:Hcn1	UTSW	13	118,112,344 (GRCm39)	small insertion	probably benign
PIT4504001:Hcn1	UTSW	13	118,112,411 (GRCm39)	missense	possibly damaging	0.90
R0420:Hcn1	UTSW	13	118,111,911 (GRCm39)	missense	unknown
R1558:Hcn1	UTSW	13	118,112,112 (GRCm39)	missense	unknown
R1659:Hcn1	UTSW	13	118,112,610 (GRCm39)	missense	probably damaging	0.99
R1667:Hcn1	UTSW	13	117,739,609 (GRCm39)	missense	unknown
R1766:Hcn1	UTSW	13	117,793,270 (GRCm39)	missense	probably benign	0.39
R1842:Hcn1	UTSW	13	118,112,544 (GRCm39)	missense	probably damaging	0.99
R2051:Hcn1	UTSW	13	118,112,619 (GRCm39)	missense	probably damaging	0.99
R3605:Hcn1	UTSW	13	118,111,788 (GRCm39)	missense	unknown
R4259:Hcn1	UTSW	13	118,111,884 (GRCm39)	missense	unknown
R4284:Hcn1	UTSW	13	118,112,269 (GRCm39)	small deletion	probably benign
R4637:Hcn1	UTSW	13	118,112,249 (GRCm39)	missense	unknown
R4679:Hcn1	UTSW	13	117,793,551 (GRCm39)	missense	probably benign	0.39
R4777:Hcn1	UTSW	13	118,112,269 (GRCm39)	small deletion	probably benign
R4839:Hcn1	UTSW	13	118,062,246 (GRCm39)	missense	unknown
R4883:Hcn1	UTSW	13	118,039,431 (GRCm39)	critical splice donor site	probably null
R5015:Hcn1	UTSW	13	117,739,556 (GRCm39)	missense	unknown
R5060:Hcn1	UTSW	13	118,010,441 (GRCm39)	nonsense	probably null
R5748:Hcn1	UTSW	13	118,112,591 (GRCm39)	missense	probably damaging	0.99
R5823:Hcn1	UTSW	13	117,739,388 (GRCm39)	missense	unknown
R6900:Hcn1	UTSW	13	117,793,363 (GRCm39)	missense	probably benign	0.39
R7045:Hcn1	UTSW	13	118,111,998 (GRCm39)	missense	unknown
R7049:Hcn1	UTSW	13	118,111,998 (GRCm39)	missense	unknown
R7163:Hcn1	UTSW	13	118,062,083 (GRCm39)	missense	unknown
R7534:Hcn1	UTSW	13	118,111,961 (GRCm39)	missense	unknown
R7722:Hcn1	UTSW	13	118,039,314 (GRCm39)	missense	unknown
R7984:Hcn1	UTSW	13	118,112,609 (GRCm39)	nonsense	probably null
R8083:Hcn1	UTSW	13	118,112,296 (GRCm39)	small insertion	probably benign
R8171:Hcn1	UTSW	13	117,739,270 (GRCm39)	missense	unknown
R8223:Hcn1	UTSW	13	118,010,406 (GRCm39)	missense	unknown
R8240:Hcn1	UTSW	13	118,112,269 (GRCm39)	small deletion	probably benign
R8853:Hcn1	UTSW	13	118,112,269 (GRCm39)	small deletion	probably benign
R9054:Hcn1	UTSW	13	118,108,171 (GRCm39)	missense	unknown
R9224:Hcn1	UTSW	13	118,062,254 (GRCm39)	missense	unknown
R9241:Hcn1	UTSW	13	117,793,249 (GRCm39)	missense	probably benign	0.39
R9324:Hcn1	UTSW	13	118,111,901 (GRCm39)	missense	unknown
R9632:Hcn1	UTSW	13	118,010,522 (GRCm39)	missense	probably benign	0.39
R9758:Hcn1	UTSW	13	118,112,305 (GRCm39)	small insertion	probably benign

Predicted Primers

PCR Primer
(F):5'- GCCACACGAACTTTCCATTATGCC -3'
(R):5'- TGTCGGAACAAGGTGACACGTTG -3'

Sequencing Primer
(F):5'- ATTATGCCTCTCCCACTGCG -3'
(R):5'- ATTCGCCCACAGTGGGATG -3'

Posted On

2014-04-13