Incidental Mutation 'R1627:Itgb7'
ID |
172576 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Itgb7
|
Ensembl Gene |
ENSMUSG00000001281 |
Gene Name |
integrin beta 7 |
Synonyms |
|
MMRRC Submission |
039664-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.220)
|
Stock # |
R1627 (G1)
|
Quality Score |
176 |
Status
|
Not validated
|
Chromosome |
15 |
Chromosomal Location |
102124430-102140379 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to G
at 102131911 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Glutamine to Proline
at position 224
(Q224P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000001327
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000001327]
[ENSMUST00000127014]
[ENSMUST00000230652]
|
AlphaFold |
P26011 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000001327
AA Change: Q224P
PolyPhen 2
Score 0.967 (Sensitivity: 0.77; Specificity: 0.95)
|
SMART Domains |
Protein: ENSMUSP00000001327 Gene: ENSMUSG00000001281 AA Change: Q224P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
PSI
|
44 |
92 |
6.35e-6 |
SMART |
INB
|
50 |
476 |
2.82e-273 |
SMART |
VWA
|
151 |
383 |
7.52e-2 |
SMART |
low complexity region
|
537 |
557 |
N/A |
INTRINSIC |
Pfam:EGF_2
|
605 |
635 |
2.6e-7 |
PFAM |
Integrin_B_tail
|
645 |
721 |
4.22e-18 |
SMART |
low complexity region
|
732 |
744 |
N/A |
INTRINSIC |
Integrin_b_cyt
|
746 |
792 |
7.82e-22 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000127014
|
SMART Domains |
Protein: ENSMUSP00000123227 Gene: ENSMUSG00000001281
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
23 |
N/A |
INTRINSIC |
PSI
|
48 |
85 |
4.67e-1 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000230652
|
Coding Region Coverage |
- 1x: 99.0%
- 3x: 98.0%
- 10x: 95.3%
- 20x: 89.0%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is a member of the integrin superfamily. Members of this family are adhesion receptors that function in signaling from the extracellular matrix to the cell. Integrins are heterodimeric integral membrane proteins composed of an alpha chain and a beta chain. The encoded protein forms dimers with an alpha4 chain or an alphaE chain and plays a role in leukocyte adhesion. Dimerization with alpha4 forms a homing receptor for migration of lymphocytes to the intestinal mucosa and Peyer's patches. Dimerization with alphaE permits binding to the ligand epithelial cadherin, a calcium-dependent adhesion molecule. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Sep 2013] PHENOTYPE: Homozygous null mice display hypoplasia of gut-associated lymph tissue due to defects in lymphocyte migration [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 40 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abcg3 |
A |
G |
5: 105,083,880 (GRCm39) |
M630T |
probably benign |
Het |
Anpep |
T |
C |
7: 79,491,759 (GRCm39) |
I81V |
probably benign |
Het |
Bub1 |
A |
G |
2: 127,650,933 (GRCm39) |
S627P |
probably benign |
Het |
C1s1 |
T |
A |
6: 124,514,439 (GRCm39) |
N139I |
probably damaging |
Het |
Car6 |
A |
T |
4: 150,277,035 (GRCm39) |
V152D |
probably damaging |
Het |
Cdh19 |
C |
A |
1: 110,847,375 (GRCm39) |
M411I |
probably benign |
Het |
Cep95 |
A |
G |
11: 106,700,531 (GRCm39) |
E322G |
probably damaging |
Het |
Chek1 |
C |
A |
9: 36,625,737 (GRCm39) |
V303L |
probably benign |
Het |
Dctn1 |
T |
A |
6: 83,172,064 (GRCm39) |
I818N |
probably damaging |
Het |
Dscaml1 |
T |
C |
9: 45,664,445 (GRCm39) |
S2107P |
probably damaging |
Het |
Dusp14 |
A |
G |
11: 83,939,597 (GRCm39) |
I148T |
probably damaging |
Het |
Eps15 |
A |
G |
4: 109,227,754 (GRCm39) |
D645G |
probably damaging |
Het |
Etl4 |
A |
G |
2: 20,806,390 (GRCm39) |
N1153S |
possibly damaging |
Het |
Fer1l6 |
A |
G |
15: 58,513,728 (GRCm39) |
D1541G |
probably benign |
Het |
Gm14496 |
A |
G |
2: 181,640,571 (GRCm39) |
S513G |
probably damaging |
Het |
H2-D1 |
G |
T |
17: 35,482,471 (GRCm39) |
A64S |
possibly damaging |
Het |
Hsd17b2 |
T |
A |
8: 118,428,909 (GRCm39) |
F59I |
possibly damaging |
Het |
Jak1 |
A |
G |
4: 101,048,821 (GRCm39) |
|
probably null |
Het |
Kdm1b |
G |
A |
13: 47,217,707 (GRCm39) |
|
probably null |
Het |
Lrp8 |
A |
G |
4: 107,711,613 (GRCm39) |
I466V |
probably damaging |
Het |
Mga |
A |
G |
2: 119,795,043 (GRCm39) |
D2909G |
probably damaging |
Het |
Nol8 |
T |
C |
13: 49,814,980 (GRCm39) |
S345P |
probably benign |
Het |
Nup210l |
T |
C |
3: 90,051,476 (GRCm39) |
M540T |
probably benign |
Het |
Obscn |
C |
T |
11: 59,003,464 (GRCm39) |
R1370H |
probably benign |
Het |
Or2ad1 |
A |
G |
13: 21,327,125 (GRCm39) |
F34S |
probably damaging |
Het |
Pbx3 |
A |
G |
2: 34,065,965 (GRCm39) |
V375A |
probably benign |
Het |
Ppp1r9a |
T |
C |
6: 4,906,168 (GRCm39) |
V241A |
possibly damaging |
Het |
Psmd6 |
C |
T |
14: 14,112,539 (GRCm38) |
V354M |
probably damaging |
Het |
Rab2a |
T |
C |
4: 8,578,481 (GRCm39) |
F94L |
probably damaging |
Het |
Rev1 |
T |
C |
1: 38,094,571 (GRCm39) |
D949G |
probably damaging |
Het |
Ric8a |
A |
G |
7: 140,438,091 (GRCm39) |
D110G |
probably damaging |
Het |
Rlf |
A |
T |
4: 121,007,197 (GRCm39) |
D594E |
probably benign |
Het |
Septin1 |
C |
A |
7: 126,817,230 (GRCm39) |
|
probably null |
Het |
Slco5a1 |
G |
C |
1: 13,060,607 (GRCm39) |
P38R |
probably damaging |
Het |
Snx33 |
C |
A |
9: 56,833,241 (GRCm39) |
R276L |
probably damaging |
Het |
Taf11 |
A |
T |
17: 28,124,253 (GRCm39) |
D101E |
probably benign |
Het |
Ttn |
A |
G |
2: 76,764,564 (GRCm39) |
S3168P |
probably damaging |
Het |
Uggt2 |
T |
C |
14: 119,295,075 (GRCm39) |
E41G |
possibly damaging |
Het |
Vmn2r80 |
A |
G |
10: 79,030,249 (GRCm39) |
R692G |
probably damaging |
Het |
Zfp763 |
A |
T |
17: 33,240,758 (GRCm39) |
W24R |
probably damaging |
Het |
|
Other mutations in Itgb7 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01012:Itgb7
|
APN |
15 |
102,136,020 (GRCm39) |
missense |
probably benign |
0.22 |
IGL01574:Itgb7
|
APN |
15 |
102,135,975 (GRCm39) |
missense |
possibly damaging |
0.83 |
IGL01814:Itgb7
|
APN |
15 |
102,131,852 (GRCm39) |
missense |
possibly damaging |
0.78 |
IGL01875:Itgb7
|
APN |
15 |
102,126,430 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01996:Itgb7
|
APN |
15 |
102,126,412 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02320:Itgb7
|
APN |
15 |
102,132,772 (GRCm39) |
missense |
probably benign |
0.04 |
IGL02541:Itgb7
|
APN |
15 |
102,131,892 (GRCm39) |
missense |
probably benign |
0.05 |
IGL02547:Itgb7
|
APN |
15 |
102,126,945 (GRCm39) |
missense |
probably damaging |
1.00 |
R0083:Itgb7
|
UTSW |
15 |
102,131,917 (GRCm39) |
missense |
probably damaging |
0.98 |
R0108:Itgb7
|
UTSW |
15 |
102,131,917 (GRCm39) |
missense |
probably damaging |
0.98 |
R0195:Itgb7
|
UTSW |
15 |
102,130,618 (GRCm39) |
unclassified |
probably benign |
|
R1033:Itgb7
|
UTSW |
15 |
102,131,989 (GRCm39) |
missense |
probably damaging |
1.00 |
R1999:Itgb7
|
UTSW |
15 |
102,130,553 (GRCm39) |
missense |
probably damaging |
1.00 |
R2150:Itgb7
|
UTSW |
15 |
102,130,553 (GRCm39) |
missense |
probably damaging |
1.00 |
R2331:Itgb7
|
UTSW |
15 |
102,131,983 (GRCm39) |
missense |
probably damaging |
1.00 |
R3747:Itgb7
|
UTSW |
15 |
102,131,212 (GRCm39) |
missense |
probably damaging |
1.00 |
R4758:Itgb7
|
UTSW |
15 |
102,124,642 (GRCm39) |
missense |
probably benign |
0.07 |
R4779:Itgb7
|
UTSW |
15 |
102,132,848 (GRCm39) |
missense |
possibly damaging |
0.54 |
R5134:Itgb7
|
UTSW |
15 |
102,125,842 (GRCm39) |
missense |
probably damaging |
1.00 |
R5158:Itgb7
|
UTSW |
15 |
102,125,464 (GRCm39) |
missense |
probably benign |
0.05 |
R5323:Itgb7
|
UTSW |
15 |
102,140,059 (GRCm39) |
intron |
probably benign |
|
R5416:Itgb7
|
UTSW |
15 |
102,125,744 (GRCm39) |
missense |
probably benign |
0.00 |
R5652:Itgb7
|
UTSW |
15 |
102,124,638 (GRCm39) |
missense |
possibly damaging |
0.48 |
R6089:Itgb7
|
UTSW |
15 |
102,125,721 (GRCm39) |
missense |
probably benign |
0.00 |
R6144:Itgb7
|
UTSW |
15 |
102,131,917 (GRCm39) |
missense |
probably benign |
0.45 |
R6384:Itgb7
|
UTSW |
15 |
102,132,886 (GRCm39) |
missense |
probably benign |
0.04 |
R6475:Itgb7
|
UTSW |
15 |
102,124,701 (GRCm39) |
missense |
probably benign |
0.12 |
R6754:Itgb7
|
UTSW |
15 |
102,124,595 (GRCm39) |
makesense |
probably null |
|
R6857:Itgb7
|
UTSW |
15 |
102,131,900 (GRCm39) |
missense |
probably damaging |
1.00 |
R7394:Itgb7
|
UTSW |
15 |
102,127,689 (GRCm39) |
missense |
probably damaging |
1.00 |
R7747:Itgb7
|
UTSW |
15 |
102,125,039 (GRCm39) |
missense |
possibly damaging |
0.88 |
R8014:Itgb7
|
UTSW |
15 |
102,131,087 (GRCm39) |
missense |
probably damaging |
1.00 |
R8446:Itgb7
|
UTSW |
15 |
102,127,043 (GRCm39) |
missense |
probably damaging |
1.00 |
R8523:Itgb7
|
UTSW |
15 |
102,124,957 (GRCm39) |
missense |
probably damaging |
0.99 |
R8962:Itgb7
|
UTSW |
15 |
102,127,037 (GRCm39) |
missense |
probably damaging |
1.00 |
R9051:Itgb7
|
UTSW |
15 |
102,126,359 (GRCm39) |
missense |
possibly damaging |
0.88 |
R9074:Itgb7
|
UTSW |
15 |
102,132,797 (GRCm39) |
missense |
|
|
R9105:Itgb7
|
UTSW |
15 |
102,135,904 (GRCm39) |
missense |
probably damaging |
1.00 |
R9369:Itgb7
|
UTSW |
15 |
102,131,821 (GRCm39) |
missense |
probably damaging |
1.00 |
R9378:Itgb7
|
UTSW |
15 |
102,135,831 (GRCm39) |
critical splice donor site |
probably null |
|
R9467:Itgb7
|
UTSW |
15 |
102,131,989 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- ATAACAACAGGTAGTCCTGGCCCC -3'
(R):5'- GTTTCTACACCCTTGACCCTGGATG -3'
Sequencing Primer
(F):5'- TAGTCCTGGCCCCAGACAG -3'
(R):5'- AAGCCTGGATGCTGCTG -3'
|
Posted On |
2014-04-24 |