Mutagenetix > Incidental Mutation

Incidental Mutation 'R1628:Ttc39c'

172646

Institutional Source

Beutler Lab

Gene Symbol

Ttc39c

Ensembl Gene

ENSMUSG00000024424

Gene Name

tetratricopeptide repeat domain 39C

Synonyms

1700008N02Rik, 2810439F02Rik

MMRRC Submission

039665-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.068) question?

Stock #

R1628 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

12732953-12871920 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 12867936 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133127 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025294] [ENSMUST00000169401]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000025294

SMART Domains

Protein: ENSMUSP00000025294
Gene: ENSMUSG00000024424

Domain	Start	End	E-Value	Type
Pfam:DUF3808	31	495	7.3e-140	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143388

Predicted Effect

probably benign
Transcript: ENSMUST00000169401

SMART Domains

Protein: ENSMUSP00000133127
Gene: ENSMUSG00000024424

Domain	Start	End	E-Value	Type
Pfam:DUF3808	1	437	1.6e-134	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.0%
20x: 91.7%

Validation Efficiency

99% (75/76)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg8	C	T	17: 84,999,419 (GRCm39)	Q172*	probably null	Het
AI467606	G	A	7: 126,691,755 (GRCm39)	G110D	probably benign	Het
Arhgef15	A	C	11: 68,835,640 (GRCm39)	L805R	possibly damaging	Het
B3galnt1	G	A	3: 69,482,961 (GRCm39)	T100I	probably damaging	Het
Bod1l	T	A	5: 41,974,325 (GRCm39)	M2330L	probably benign	Het
Calcr	A	T	6: 3,700,251 (GRCm39)	H280Q	possibly damaging	Het
Camk1d	T	C	2: 5,315,848 (GRCm39)	D263G	probably damaging	Het
Cd48	T	A	1: 171,532,420 (GRCm39)	I233N	probably damaging	Het
Cyp3a25	A	T	5: 145,938,273 (GRCm39)	Y68*	probably null	Het
Dapk3	C	A	10: 81,027,643 (GRCm39)	T227K	possibly damaging	Het
Dnajc22	A	G	15: 98,998,817 (GRCm39)	M1V	probably null	Het
Etv5	C	T	16: 22,220,421 (GRCm39)		probably null	Het
Gabrr1	A	G	4: 33,152,432 (GRCm39)	Y124C	probably damaging	Het
Gba2	C	T	4: 43,570,118 (GRCm39)	R392Q	probably benign	Het
Gli3	C	G	13: 15,900,897 (GRCm39)	A1428G	probably benign	Het
Gls	G	A	1: 52,271,835 (GRCm39)	A106V	probably benign	Het
Gm21370	A	G	13: 120,488,414 (GRCm39)	V45A	possibly damaging	Het
Gpr4	A	G	7: 18,957,124 (GRCm39)	T349A	probably benign	Het
Gpr6	C	T	10: 40,947,544 (GRCm39)	V13M	possibly damaging	Het
Gvin3	A	T	7: 106,202,476 (GRCm39)	L256*	probably null	Het
Hectd3	A	G	4: 116,854,589 (GRCm39)	H345R	probably damaging	Het
Igfl3	A	T	7: 17,914,232 (GRCm39)	K135N	probably benign	Het
Il23r	A	G	6: 67,400,593 (GRCm39)	L579S	probably damaging	Het
Itsn2	A	C	12: 4,679,652 (GRCm39)	M154L	probably benign	Het
Junb	T	A	8: 85,705,039 (GRCm39)	Q7L	possibly damaging	Het
Kif21b	T	A	1: 136,098,958 (GRCm39)	H1415Q	probably benign	Het
Kirrel1	C	T	3: 86,996,458 (GRCm39)	M380I	probably null	Het
Klhdc10	T	G	6: 30,444,461 (GRCm39)	F79L	probably damaging	Het
Klk1b8	A	G	7: 43,603,565 (GRCm39)		probably null	Het
Lmbrd2	T	A	15: 9,182,593 (GRCm39)	N509K	probably damaging	Het
Mctp2	A	G	7: 71,861,337 (GRCm39)		probably null	Het
Myo3b	A	G	2: 70,117,306 (GRCm39)	N913S	probably benign	Het
N4bp2	G	A	5: 65,960,915 (GRCm39)		probably null	Het
Nt5c1a	A	G	4: 123,102,284 (GRCm39)	E70G	possibly damaging	Het
Or12k5	A	G	2: 36,894,738 (GRCm39)	V296A	probably damaging	Het
Papln	A	G	12: 83,831,180 (GRCm39)		probably benign	Het
Pcnx3	G	T	19: 5,736,093 (GRCm39)	S244R	probably damaging	Het
Pecam1	A	T	11: 106,573,786 (GRCm39)		probably null	Het
Plppr4	A	T	3: 117,121,921 (GRCm39)	L219Q	probably damaging	Het
Ppp2r5b	A	G	19: 6,280,935 (GRCm39)		probably null	Het
Ralgapb	A	G	2: 158,272,383 (GRCm39)	R146G	probably benign	Het
Rapgef6	TG	TGG	11: 54,437,223 (GRCm39)		probably null	Het
Rfpl4b	T	G	10: 38,697,530 (GRCm39)	I24L	probably benign	Het
Serpinb1b	G	A	13: 33,277,637 (GRCm39)	C290Y	probably benign	Het
Skic3	A	G	13: 76,259,910 (GRCm39)	E70G	possibly damaging	Het
Slc25a17	A	G	15: 81,244,925 (GRCm39)	S3P	possibly damaging	Het
Slc4a11	A	C	2: 130,529,047 (GRCm39)		probably null	Het
Spata31e4	T	C	13: 50,856,324 (GRCm39)	L654P	probably benign	Het
Sptb	A	G	12: 76,630,622 (GRCm39)	Y2231H	probably damaging	Het
Srgap1	T	G	10: 121,706,244 (GRCm39)	M221L	probably benign	Het
Srgap3	A	G	6: 112,716,331 (GRCm39)	L599P	probably damaging	Het
Svep1	C	T	4: 58,107,561 (GRCm39)	V1177M	probably benign	Het
Tarbp1	A	G	8: 127,157,599 (GRCm39)	F1303L	possibly damaging	Het
Tbxa2r	T	C	10: 81,170,341 (GRCm39)	S276P	possibly damaging	Het
Try10	A	T	6: 41,334,390 (GRCm39)	D194V	probably damaging	Het
Ttc8	G	A	12: 98,948,780 (GRCm39)	V489M	probably benign	Het
Unc13b	G	T	4: 43,263,371 (GRCm39)	R1912L	probably damaging	Het
Unc45b	T	A	11: 82,820,206 (GRCm39)		probably null	Het
Usp17lb	T	C	7: 104,490,048 (GRCm39)	Y292C	probably damaging	Het
Usp34	A	G	11: 23,438,725 (GRCm39)	D3429G	probably damaging	Het
Usp42	A	G	5: 143,703,122 (GRCm39)	S500P	probably damaging	Het
Vmn2r14	T	C	5: 109,367,838 (GRCm39)	M385V	probably benign	Het
Vmn2r60	G	A	7: 41,785,830 (GRCm39)	W211*	probably null	Het
Vwf	A	T	6: 125,624,701 (GRCm39)		probably benign	Het
Wdfy4	A	T	14: 32,681,918 (GRCm39)	F3018I	probably damaging	Het
Wwox	A	G	8: 115,174,973 (GRCm39)	T102A	probably benign	Het
Zfp142	A	C	1: 74,611,047 (GRCm39)	L813R	possibly damaging	Het
Zfp407	G	A	18: 84,372,658 (GRCm39)	T1670M	probably damaging	Het
Zfp93	A	G	7: 23,974,282 (GRCm39)	E89G	probably benign	Het
Zwint	C	T	10: 72,492,127 (GRCm39)	Q18*	probably null	Het

Other mutations in Ttc39c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00976:Ttc39c	APN	18	12,817,952 (GRCm39)	splice site	probably benign
IGL02323:Ttc39c	APN	18	12,869,800 (GRCm39)	missense	probably null	0.79
R1771:Ttc39c	UTSW	18	12,817,881 (GRCm39)	splice site	probably null
R2002:Ttc39c	UTSW	18	12,830,935 (GRCm39)	splice site	probably null
R4162:Ttc39c	UTSW	18	12,857,994 (GRCm39)	critical splice acceptor site	probably null
R4344:Ttc39c	UTSW	18	12,861,667 (GRCm39)	splice site	probably null
R4484:Ttc39c	UTSW	18	12,863,126 (GRCm39)	missense	possibly damaging	0.90
R4752:Ttc39c	UTSW	18	12,861,782 (GRCm39)	missense	probably benign	0.05
R4872:Ttc39c	UTSW	18	12,820,173 (GRCm39)	intron	probably benign
R4912:Ttc39c	UTSW	18	12,867,951 (GRCm39)	missense	probably benign	0.00
R4946:Ttc39c	UTSW	18	12,857,999 (GRCm39)	nonsense	probably null
R5036:Ttc39c	UTSW	18	12,820,138 (GRCm39)	critical splice donor site	probably null
R5439:Ttc39c	UTSW	18	12,828,428 (GRCm39)	missense	possibly damaging	0.88
R5726:Ttc39c	UTSW	18	12,830,992 (GRCm39)	missense	probably damaging	1.00
R7213:Ttc39c	UTSW	18	12,820,138 (GRCm39)	critical splice donor site	probably null
R7400:Ttc39c	UTSW	18	12,776,856 (GRCm39)	intron	probably benign
R7413:Ttc39c	UTSW	18	12,861,746 (GRCm39)	missense	possibly damaging	0.65
R7567:Ttc39c	UTSW	18	12,822,936 (GRCm39)	missense	probably benign	0.01
R7979:Ttc39c	UTSW	18	12,866,022 (GRCm39)	missense	probably benign
R8769:Ttc39c	UTSW	18	12,828,545 (GRCm39)	missense	probably damaging	1.00
R8824:Ttc39c	UTSW	18	12,820,003 (GRCm39)	splice site	probably benign
R8827:Ttc39c	UTSW	18	12,828,436 (GRCm39)	missense	probably benign
R8855:Ttc39c	UTSW	18	12,831,003 (GRCm39)	missense	probably benign	0.30
R8866:Ttc39c	UTSW	18	12,831,003 (GRCm39)	missense	probably benign	0.30
R8996:Ttc39c	UTSW	18	12,820,136 (GRCm39)	missense	probably benign	0.00
R9349:Ttc39c	UTSW	18	12,822,932 (GRCm39)	nonsense	probably null
R9356:Ttc39c	UTSW	18	12,853,102 (GRCm39)	critical splice donor site	probably null
R9797:Ttc39c	UTSW	18	12,828,542 (GRCm39)	missense	probably damaging	1.00
Z1088:Ttc39c	UTSW	18	12,820,020 (GRCm39)	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- TGCAGAGACAGGCAGGAATTTACAC -3'
(R):5'- CTTCGTACACTCCACTGCTGAAGAC -3'

Sequencing Primer
(F):5'- ggcagggatgtaactggg -3'
(R):5'- TCCACTGCTGAAGACTACCG -3'

Posted On

2014-04-24