Mutagenetix > Incidental Mutation

Incidental Mutation 'R0071:Sephs1'

17309

Institutional Source

Beutler Lab

Gene Symbol

Sephs1

Ensembl Gene

ENSMUSG00000026662

Gene Name

selenophosphate synthetase 1

Synonyms

1110046B24Rik, SPS1

MMRRC Submission

038362-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.888) question?

Stock #

R0071 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

4886375-4915368 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 4904371 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 250 (T250A)

Ref Sequence

ENSEMBL: ENSMUSP00000110671 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027973] [ENSMUST00000115019]

AlphaFold

Q8BH69

Predicted Effect

probably benign
Transcript: ENSMUST00000027973
AA Change: T250A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000027973
Gene: ENSMUSG00000026662
AA Change: T250A

Domain	Start	End	E-Value	Type
Pfam:AIRS	60	180	1.4e-11	PFAM
Pfam:AIRS_C	192	368	3.6e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115019
AA Change: T250A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000110671
Gene: ENSMUSG00000026662
AA Change: T250A

Domain	Start	End	E-Value	Type
Pfam:AIRS	67	164	8.4e-13	PFAM
Pfam:AIRS_C	192	368	7.8e-29	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140045

Meta Mutation Damage Score

0.0952

Coding Region Coverage

1x: 88.2%
3x: 84.4%
10x: 70.8%
20x: 43.5%

Validation Efficiency

93% (94/101)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an enzyme that synthesizes selenophosphate from selenide and ATP. Selenophosphate is the selenium donor used to synthesize selenocysteine, which is co-translationally incorporated into selenoproteins at in-frame UGA codons. [provided by RefSeq, Sep 2010]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acrbp	T	C	6: 125,027,915 (GRCm39)		probably benign	Het
Amotl1	G	A	9: 14,460,069 (GRCm39)	A890V	probably benign	Het
Aox3	T	A	1: 58,211,050 (GRCm39)	C931*	probably null	Het
Apob	T	A	12: 8,052,111 (GRCm39)	V1184E	probably damaging	Het
Bbx	C	T	16: 50,100,755 (GRCm39)	E47K	probably benign	Het
Bccip	A	G	7: 133,315,960 (GRCm39)	D72G	probably damaging	Het
Bckdha	A	T	7: 25,329,868 (GRCm39)		probably null	Het
Bmerb1	A	G	16: 13,906,818 (GRCm39)	D11G	probably damaging	Het
Cald1	C	T	6: 34,735,069 (GRCm39)		probably benign	Het
Cdk11b	T	C	4: 155,733,880 (GRCm39)		probably benign	Het
Cebpe	G	T	14: 54,948,061 (GRCm39)	R261S	probably damaging	Het
Cep95	C	T	11: 106,681,554 (GRCm39)		probably benign	Het
Chi3l1	T	C	1: 134,113,017 (GRCm39)	Y150H	probably benign	Het
Chrnd	T	C	1: 87,120,559 (GRCm39)		probably benign	Het
Cog2	T	C	8: 125,275,407 (GRCm39)		probably benign	Het
Coro7	A	T	16: 4,488,391 (GRCm39)	L93Q	probably damaging	Het
Csmd3	T	C	15: 47,460,217 (GRCm39)	T3525A	probably benign	Het
Fam227b	T	A	2: 125,965,994 (GRCm39)	N144Y	probably benign	Het
Fhod1	A	T	8: 106,063,857 (GRCm39)		probably null	Het
Folr1	A	G	7: 101,513,130 (GRCm39)		probably null	Het
Glis3	C	T	19: 28,241,255 (GRCm39)		probably benign	Het
Golgb1	G	A	16: 36,735,865 (GRCm39)	R1704Q	probably benign	Het
Helz2	T	C	2: 180,878,200 (GRCm39)	Y866C	probably damaging	Het
Kcnma1	C	T	14: 23,576,835 (GRCm39)	R236H	probably damaging	Het
Lct	C	T	1: 128,219,755 (GRCm39)	W1631*	probably null	Het
Limk1	G	T	5: 134,690,245 (GRCm39)	Q104K	probably benign	Het
Ly75	T	C	2: 60,152,163 (GRCm39)	K1130R	probably benign	Het
Mdm1	A	G	10: 117,982,701 (GRCm39)	E112G	probably damaging	Het
Myo7a	A	T	7: 97,706,037 (GRCm39)	Y1836N	probably damaging	Het
Nsun7	A	G	5: 66,421,388 (GRCm39)	Y118C	probably benign	Het
Or13a20	A	T	7: 140,232,170 (GRCm39)	I93F	probably benign	Het
Or2d36	A	G	7: 106,746,919 (GRCm39)	Y132C	probably damaging	Het
Osbpl11	T	C	16: 33,034,708 (GRCm39)		probably benign	Het
Pik3cb	A	T	9: 98,926,918 (GRCm39)	D886E	probably benign	Het
Pkhd1	T	A	1: 20,271,568 (GRCm39)	Y2995F	probably benign	Het
Raver2	C	T	4: 100,977,642 (GRCm39)		probably benign	Het
Sec22c	A	G	9: 121,521,979 (GRCm39)	F44L	probably damaging	Het
Shoc1	A	G	4: 59,059,643 (GRCm39)	Y1006H	possibly damaging	Het
Sobp	A	G	10: 43,033,993 (GRCm39)	L111P	probably damaging	Het
Sparcl1	G	T	5: 104,233,707 (GRCm39)	Y547*	probably null	Het
Spata31d1b	G	A	13: 59,863,163 (GRCm39)	A104T	probably benign	Het
Spsb3	A	G	17: 25,106,878 (GRCm39)	D184G	probably damaging	Het
Sptan1	A	T	2: 29,893,354 (GRCm39)	K1148*	probably null	Het
Tdrd12	A	G	7: 35,228,671 (GRCm39)	V17A	possibly damaging	Het
Tlr9	A	G	9: 106,100,777 (GRCm39)	T23A	probably benign	Het
Tra2b	A	T	16: 22,073,151 (GRCm39)		probably benign	Het
Tspan15	A	G	10: 62,038,849 (GRCm39)		probably benign	Het
Ttc41	A	G	10: 86,572,710 (GRCm39)	N694S	probably benign	Het
Ube3b	G	A	5: 114,557,558 (GRCm39)	G1014D	probably damaging	Het
Unc5d	A	G	8: 29,209,854 (GRCm39)	V422A	possibly damaging	Het
Vmn2r80	C	T	10: 79,007,566 (GRCm39)	T514I	possibly damaging	Het

Other mutations in Sephs1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02525:Sephs1	APN	2	4,911,407 (GRCm39)	missense	probably damaging	0.99
IGL02654:Sephs1	APN	2	4,889,366 (GRCm39)	missense	probably benign	0.27
IGL03202:Sephs1	APN	2	4,894,074 (GRCm39)	missense	possibly damaging	0.88
IGL03368:Sephs1	APN	2	4,894,080 (GRCm39)	missense	possibly damaging	0.54
R0022:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0063:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0063:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0071:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0179:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0218:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0220:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0378:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0379:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0381:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0448:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0634:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R0706:Sephs1	UTSW	2	4,904,371 (GRCm39)	missense	probably benign
R2117:Sephs1	UTSW	2	4,904,351 (GRCm39)	missense	probably benign
R4496:Sephs1	UTSW	2	4,911,494 (GRCm39)	missense	probably benign	0.03
R4632:Sephs1	UTSW	2	4,901,571 (GRCm39)	missense	probably benign	0.04
R5150:Sephs1	UTSW	2	4,904,321 (GRCm39)	missense	possibly damaging	0.92
R5219:Sephs1	UTSW	2	4,896,501 (GRCm39)	missense	probably benign	0.22
R5593:Sephs1	UTSW	2	4,898,098 (GRCm39)	missense	probably benign
R5628:Sephs1	UTSW	2	4,894,018 (GRCm39)	missense	probably benign	0.04
R5716:Sephs1	UTSW	2	4,889,389 (GRCm39)	missense	probably benign	0.04
R5852:Sephs1	UTSW	2	4,904,339 (GRCm39)	missense	possibly damaging	0.48
R5864:Sephs1	UTSW	2	4,910,393 (GRCm39)	missense	probably damaging	0.99
R8021:Sephs1	UTSW	2	4,911,434 (GRCm39)	missense	probably benign	0.01
R8475:Sephs1	UTSW	2	4,893,821 (GRCm39)	splice site	probably null
R8709:Sephs1	UTSW	2	4,889,402 (GRCm39)	missense	probably benign
R9376:Sephs1	UTSW	2	4,910,469 (GRCm39)	missense	probably benign	0.00
R9453:Sephs1	UTSW	2	4,889,174 (GRCm39)	start gained	probably benign
R9679:Sephs1	UTSW	2	4,898,105 (GRCm39)	missense	probably damaging	1.00

Posted On

2013-01-20