Incidental Mutation 'R1566:Klra3'
ID 175264
Institutional Source Beutler Lab
Gene Symbol Klra3
Ensembl Gene ENSMUSG00000067591
Gene Name killer cell lectin-like receptor, subfamily A, member 3
Synonyms NK-2.1, Nk2.1, Ly49c, Nk2, 5E6, Ly49C, Nk-2
MMRRC Submission 039605-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.048) question?
Stock # R1566 (G1)
Quality Score 225
Status Not validated
Chromosome 6
Chromosomal Location 130300252-130314537 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to C at 130310107 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Glycine at position 138 (R138G)
Ref Sequence ENSEMBL: ENSMUSP00000107629 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000088017] [ENSMUST00000111998]
AlphaFold Q64329
Predicted Effect probably benign
Transcript: ENSMUST00000088017
AA Change: R138G

PolyPhen 2 Score 0.123 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000085333
Gene: ENSMUSG00000067591
AA Change: R138G

DomainStartEndE-ValueType
low complexity region 56 66 N/A INTRINSIC
Blast:CLECT 73 117 1e-7 BLAST
CLECT 143 258 7.11e-16 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000111998
AA Change: R138G

PolyPhen 2 Score 0.123 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000107629
Gene: ENSMUSG00000067591
AA Change: R138G

DomainStartEndE-ValueType
low complexity region 56 66 N/A INTRINSIC
Blast:CLECT 73 117 1e-7 BLAST
CLECT 143 258 7.11e-16 SMART
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.7%
  • 20x: 90.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 69 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700012B07Rik T A 11: 109,679,632 (GRCm39) I247F probably benign Het
Afap1l1 T C 18: 61,888,714 (GRCm39) N119S probably benign Het
Ap2a1 T C 7: 44,552,904 (GRCm39) D721G probably benign Het
Ap3m2 C T 8: 23,293,967 (GRCm39) V28M probably damaging Het
Arhgef7 A G 8: 11,832,620 (GRCm39) T32A possibly damaging Het
Avl9 C T 6: 56,713,467 (GRCm39) R242* probably null Het
Bsn G A 9: 108,003,184 (GRCm39) T407I probably benign Het
Capn3 A T 2: 120,333,474 (GRCm39) R627S possibly damaging Het
Car13 G A 3: 14,715,758 (GRCm39) R92Q probably benign Het
Clcn1 T C 6: 42,268,374 (GRCm39) I149T possibly damaging Het
Col1a2 G T 6: 4,523,613 (GRCm39) G514V probably damaging Het
Ctsw C A 19: 5,515,445 (GRCm39) C347F probably damaging Het
Dna2 C T 10: 62,784,966 (GRCm39) R28W probably benign Het
Eif1ad8 A T 12: 87,564,001 (GRCm39) H112L probably benign Het
Eml1 T A 12: 108,438,151 (GRCm39) V97D probably damaging Het
Epb41l1 A G 2: 156,363,879 (GRCm39) E796G probably benign Het
Gdnf A G 15: 7,863,895 (GRCm39) K102R probably benign Het
Gm1110 T C 9: 26,792,166 (GRCm39) E618G probably damaging Het
Gmnc T C 16: 26,782,689 (GRCm39) D22G probably damaging Het
Greb1 T C 12: 16,761,829 (GRCm39) D517G possibly damaging Het
Gsta1 A T 9: 78,149,741 (GRCm39) K185* probably null Het
Ift88 A G 14: 57,678,468 (GRCm39) D160G probably benign Het
Intu T A 3: 40,647,008 (GRCm39) I627N probably damaging Het
Itgav T A 2: 83,566,974 (GRCm39) F101L probably damaging Het
Kars1 C T 8: 112,724,290 (GRCm39) V475I probably benign Het
Klra7 A G 6: 130,208,564 (GRCm39) V6A probably damaging Het
Krtap6-2 A G 16: 89,216,626 (GRCm39) S114P unknown Het
Ldlrad4 T C 18: 68,383,669 (GRCm39) S122P probably benign Het
Lig4 C A 8: 10,023,650 (GRCm39) L43F probably benign Het
Mfsd4a T C 1: 131,986,917 (GRCm39) D137G probably damaging Het
Mmel1 C T 4: 154,968,110 (GRCm39) R149C probably damaging Het
Morc2b T A 17: 33,355,948 (GRCm39) H608L probably benign Het
Mrgpra6 G A 7: 46,838,652 (GRCm39) T182I probably benign Het
Nat8l C A 5: 34,158,200 (GRCm39) N203K probably benign Het
Nin A T 12: 70,101,253 (GRCm39) V448E probably damaging Het
Or10a4 T G 7: 106,696,759 (GRCm39) F29C probably damaging Het
Or2m12 T A 16: 19,105,077 (GRCm39) M139L possibly damaging Het
Or5k15 T A 16: 58,709,903 (GRCm39) I227F probably damaging Het
Or8k21 G A 2: 86,145,129 (GRCm39) T167I probably benign Het
Pank4 T C 4: 155,064,978 (GRCm39) L759P probably damaging Het
Pcm1 T A 8: 41,743,810 (GRCm39) N1152K probably damaging Het
Pitpnm3 A T 11: 71,949,785 (GRCm39) probably null Het
Plekhg3 T C 12: 76,618,839 (GRCm39) M497T possibly damaging Het
Ppfia3 T C 7: 44,990,112 (GRCm39) D1138G probably damaging Het
Prl6a1 T A 13: 27,499,410 (GRCm39) S59R possibly damaging Het
Pth2r A G 1: 65,427,697 (GRCm39) S457G possibly damaging Het
Rbm25 T A 12: 83,721,828 (GRCm39) N671K probably damaging Het
Rbm26 T A 14: 105,397,980 (GRCm39) K47N unknown Het
Ryr1 T A 7: 28,791,600 (GRCm39) I1435F possibly damaging Het
Scin T A 12: 40,131,673 (GRCm39) H287L probably benign Het
Serpinb9e T C 13: 33,437,477 (GRCm39) L120P probably damaging Het
Slc34a1 A C 13: 55,559,844 (GRCm39) probably null Het
Slc39a10 A G 1: 46,875,245 (GRCm39) F19S possibly damaging Het
Sos1 A G 17: 80,761,345 (GRCm39) V117A probably damaging Het
Spta1 C A 1: 174,012,272 (GRCm39) N359K probably benign Het
Sspo G A 6: 48,443,804 (GRCm39) probably null Het
Stx5a T A 19: 8,719,675 (GRCm39) D13E probably damaging Het
Supt16 G A 14: 52,414,112 (GRCm39) A489V probably damaging Het
Tap1 T A 17: 34,408,520 (GRCm39) L253Q probably benign Het
Tmc6 A G 11: 117,660,262 (GRCm39) S659P probably damaging Het
Tnfsf14 T C 17: 57,500,876 (GRCm39) D65G probably benign Het
Ttc28 G A 5: 111,373,543 (GRCm39) S962N probably damaging Het
Ugt8a T C 3: 125,669,207 (GRCm39) Y299C probably damaging Het
Upk1a A G 7: 30,309,145 (GRCm39) V59A possibly damaging Het
Usp38 T C 8: 81,711,432 (GRCm39) T868A probably benign Het
Wdsub1 G A 2: 59,707,059 (GRCm39) H58Y probably damaging Het
Zc3h7b T C 15: 81,653,035 (GRCm39) S19P possibly damaging Het
Zfp385b A C 2: 77,246,257 (GRCm39) F257V probably benign Het
Zmym4 A C 4: 126,804,940 (GRCm39) I188S possibly damaging Het
Other mutations in Klra3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00836:Klra3 APN 6 130,304,107 (GRCm39) missense probably benign 0.26
R0004:Klra3 UTSW 6 130,300,650 (GRCm39) missense probably damaging 1.00
R1532:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R1533:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R1534:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R1536:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R1547:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R1548:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R1567:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R1769:Klra3 UTSW 6 130,307,226 (GRCm39) critical splice acceptor site probably null
R1772:Klra3 UTSW 6 130,300,671 (GRCm39) missense probably benign
R1806:Klra3 UTSW 6 130,304,033 (GRCm39) missense probably damaging 0.99
R2131:Klra3 UTSW 6 130,312,738 (GRCm39) missense probably benign 0.07
R2138:Klra3 UTSW 6 130,310,121 (GRCm39) missense probably benign 0.00
R2152:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R2154:Klra3 UTSW 6 130,310,107 (GRCm39) missense probably benign 0.12
R2906:Klra3 UTSW 6 130,310,302 (GRCm39) missense probably damaging 0.99
R2907:Klra3 UTSW 6 130,310,302 (GRCm39) missense probably damaging 0.99
R4287:Klra3 UTSW 6 130,311,265 (GRCm39) missense probably benign 0.08
R4732:Klra3 UTSW 6 130,304,095 (GRCm39) missense possibly damaging 0.94
R4733:Klra3 UTSW 6 130,304,095 (GRCm39) missense possibly damaging 0.94
R4829:Klra3 UTSW 6 130,300,579 (GRCm39) missense probably benign 0.05
R5308:Klra3 UTSW 6 130,311,270 (GRCm39) splice site probably null
R6701:Klra3 UTSW 6 130,307,216 (GRCm39) missense probably benign 0.01
R7019:Klra3 UTSW 6 130,304,087 (GRCm39) missense probably damaging 1.00
R7174:Klra3 UTSW 6 130,312,941 (GRCm39) splice site probably null
R8542:Klra3 UTSW 6 130,310,096 (GRCm39) critical splice donor site probably null
R8924:Klra3 UTSW 6 130,312,732 (GRCm39) missense probably benign 0.24
R9235:Klra3 UTSW 6 130,311,218 (GRCm39) nonsense probably null
R9716:Klra3 UTSW 6 130,300,602 (GRCm39) missense probably damaging 1.00
X0052:Klra3 UTSW 6 130,310,143 (GRCm39) missense probably damaging 0.99
Z1176:Klra3 UTSW 6 130,312,684 (GRCm39) nonsense probably null
Z1177:Klra3 UTSW 6 130,307,084 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- CAGCCTCATTCACTGTGACACTGAC -3'
(R):5'- AGCAACATGCAAAGGGCTTTCAAC -3'

Sequencing Primer
(F):5'- GAGTGCCAAAGAGAACTTTCCTTC -3'
(R):5'- TGCAAAGGGCTTTCAACTTAAAGG -3'
Posted On 2014-04-24