Incidental Mutation 'R1568:Or52n4'
ID 175421
Institutional Source Beutler Lab
Gene Symbol Or52n4
Ensembl Gene ENSMUSG00000070421
Gene Name olfactory receptor family 52 subfamily N member 4
Synonyms MOR34-5, GA_x6K02T2PBJ9-7273558-7272587, Olfr658
MMRRC Submission 039607-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.050) question?
Stock # R1568 (G1)
Quality Score 225
Status Not validated
Chromosome 7
Chromosomal Location 104292087-104296512 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 104293977 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Phenylalanine at position 199 (I199F)
Ref Sequence ENSEMBL: ENSMUSP00000147498 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000089296] [ENSMUST00000210641]
AlphaFold Q8VGV5
Predicted Effect probably benign
Transcript: ENSMUST00000089296
AA Change: I201F

PolyPhen 2 Score 0.279 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000086711
Gene: ENSMUSG00000070421
AA Change: I201F

DomainStartEndE-ValueType
Pfam:7tm_4 35 315 1.9e-108 PFAM
Pfam:7TM_GPCR_Srsx 39 256 3.1e-9 PFAM
Pfam:7tm_1 45 297 1.6e-18 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000210641
AA Change: I199F

PolyPhen 2 Score 0.279 (Sensitivity: 0.91; Specificity: 0.88)
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.2%
  • 10x: 95.8%
  • 20x: 90.9%
Validation Efficiency
MGI Phenotype FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam18 T G 8: 25,137,799 (GRCm39) probably null Het
Adgb A T 10: 10,318,409 (GRCm39) Y138* probably null Het
Adra1d T C 2: 131,388,092 (GRCm39) R488G possibly damaging Het
Ahnak G A 19: 8,979,739 (GRCm39) G341E probably damaging Het
Ankmy1 T C 1: 92,808,838 (GRCm39) D690G probably damaging Het
Arhgef38 C T 3: 132,838,225 (GRCm39) E21K probably damaging Het
Atp8b2 T C 3: 89,857,155 (GRCm39) M402V probably damaging Het
Atp8b4 G T 2: 126,167,314 (GRCm39) H1062N probably benign Het
Bdnf A G 2: 109,554,139 (GRCm39) H131R probably damaging Het
Cblb C T 16: 51,956,192 (GRCm39) T265M probably damaging Het
Cenpe T A 3: 134,945,519 (GRCm39) M1011K probably benign Het
Clca3a2 A T 3: 144,781,410 (GRCm39) Y711* probably null Het
Clca4a A G 3: 144,658,690 (GRCm39) Y842H probably benign Het
Clspn T A 4: 126,475,310 (GRCm39) M1021K probably benign Het
Cpne8 G T 15: 90,503,845 (GRCm39) R107S probably damaging Het
D6Ertd527e C G 6: 87,088,506 (GRCm39) T223S unknown Het
Dna2 C T 10: 62,784,966 (GRCm39) R28W probably benign Het
Dnah5 T A 15: 28,409,323 (GRCm39) N3580K probably damaging Het
Dsp T C 13: 38,359,123 (GRCm39) I298T probably damaging Het
Dync2h1 T C 9: 7,157,553 (GRCm39) K858R probably null Het
Fasn A T 11: 120,704,075 (GRCm39) V1448E possibly damaging Het
Ghdc A G 11: 100,659,331 (GRCm39) I322T probably benign Het
Gins2 T C 8: 121,308,939 (GRCm39) D105G probably damaging Het
Insr A T 8: 3,215,576 (GRCm39) D975E probably benign Het
Klrc3 T C 6: 129,616,510 (GRCm39) D169G probably benign Het
Krt76 T A 15: 101,793,443 (GRCm39) S532C unknown Het
Lamp3 A T 16: 19,492,275 (GRCm39) M323K probably damaging Het
Lgmn T C 12: 102,360,868 (GRCm39) I423M possibly damaging Het
Lpgat1 A T 1: 191,508,538 (GRCm39) T359S possibly damaging Het
Lrguk T A 6: 34,063,373 (GRCm39) I466N probably damaging Het
Magi3 A C 3: 103,996,843 (GRCm39) M234R probably benign Het
Myh14 G A 7: 44,261,122 (GRCm39) R1042* probably null Het
Nfia T G 4: 97,999,461 (GRCm39) Y378D possibly damaging Het
Npffr1 T A 10: 61,462,012 (GRCm39) S383T possibly damaging Het
Or4f57 C A 2: 111,790,585 (GRCm39) V278F probably benign Het
Or5b112 C A 19: 13,319,539 (GRCm39) P139Q probably benign Het
Or9s14 T C 1: 92,535,676 (GRCm39) L39P probably damaging Het
Osr1 G A 12: 9,629,798 (GRCm39) probably null Het
Pde4b A C 4: 102,454,896 (GRCm39) R375S probably damaging Het
Pde8a A G 7: 80,942,011 (GRCm39) E150G probably damaging Het
Pkhd1l1 A T 15: 44,408,897 (GRCm39) probably null Het
Ppp3ca A G 3: 136,634,305 (GRCm39) T422A probably benign Het
Proser1 T C 3: 53,385,180 (GRCm39) V354A possibly damaging Het
Rgs20 G T 1: 5,091,050 (GRCm39) R127S probably benign Het
Sanbr T C 11: 23,539,971 (GRCm39) K48E probably damaging Het
Sec22a T C 16: 35,167,998 (GRCm39) D171G probably benign Het
Secisbp2 A G 13: 51,827,143 (GRCm39) E417G possibly damaging Het
Serpinb6b T C 13: 33,158,895 (GRCm39) L32S probably damaging Het
Sf3b1 C G 1: 55,058,554 (GRCm39) E12Q possibly damaging Het
Slc39a10 A T 1: 46,865,375 (GRCm39) S487T probably benign Het
Slc6a1 G T 6: 114,284,731 (GRCm39) G263V probably damaging Het
Spag6 A G 2: 18,737,925 (GRCm39) D265G probably benign Het
Spata31e2 T C 1: 26,724,950 (GRCm39) T77A probably benign Het
Sybu G T 15: 44,582,228 (GRCm39) S132* probably null Het
Virma T C 4: 11,528,776 (GRCm39) S1288P probably damaging Het
Vmn1r229 T A 17: 21,035,067 (GRCm39) V104D probably damaging Het
Vmn1r238 T C 18: 3,123,358 (GRCm39) T19A probably benign Het
Vmn2r86 C T 10: 130,289,010 (GRCm39) V164I probably benign Het
Wfdc13 G T 2: 164,528,854 (GRCm39) A64S probably damaging Het
Zfp873 C A 10: 81,896,113 (GRCm39) H318Q probably damaging Het
Zyg11a A G 4: 108,040,843 (GRCm39) probably null Het
Other mutations in Or52n4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01404:Or52n4 APN 7 104,293,687 (GRCm39) nonsense probably null
IGL01408:Or52n4 APN 7 104,294,136 (GRCm39) missense possibly damaging 0.61
IGL02612:Or52n4 APN 7 104,293,870 (GRCm39) missense probably benign 0.00
R0241:Or52n4 UTSW 7 104,294,450 (GRCm39) missense probably benign 0.00
R0241:Or52n4 UTSW 7 104,294,450 (GRCm39) missense probably benign 0.00
R1171:Or52n4 UTSW 7 104,294,204 (GRCm39) missense probably damaging 1.00
R1465:Or52n4 UTSW 7 104,294,153 (GRCm39) missense probably benign 0.13
R1465:Or52n4 UTSW 7 104,294,153 (GRCm39) missense probably benign 0.13
R1866:Or52n4 UTSW 7 104,294,004 (GRCm39) missense probably benign 0.35
R4061:Or52n4 UTSW 7 104,293,680 (GRCm39) nonsense probably null
R4233:Or52n4 UTSW 7 104,294,195 (GRCm39) missense probably benign 0.15
R6080:Or52n4 UTSW 7 104,294,517 (GRCm39) missense probably benign 0.01
R6479:Or52n4 UTSW 7 104,294,333 (GRCm39) missense probably benign 0.02
R7222:Or52n4 UTSW 7 104,293,937 (GRCm39) missense probably damaging 1.00
R8064:Or52n4 UTSW 7 104,294,561 (GRCm39) missense probably benign
R8352:Or52n4 UTSW 7 104,293,736 (GRCm39) missense possibly damaging 0.88
R8452:Or52n4 UTSW 7 104,293,736 (GRCm39) missense possibly damaging 0.88
R9016:Or52n4 UTSW 7 104,293,828 (GRCm39) nonsense probably null
R9034:Or52n4 UTSW 7 104,293,835 (GRCm39) missense probably damaging 1.00
R9239:Or52n4 UTSW 7 104,293,746 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GCAAGATGGAGGTATTGTGTGCCC -3'
(R):5'- CCCAAAACCCTGTGCATCTTCTGG -3'

Sequencing Primer
(F):5'- GTATTGTGTGCCCCCCAAAG -3'
(R):5'- ATCCATACCTTCACGGGGATG -3'
Posted On 2014-04-24