Incidental Mutation 'R1568:Ghdc'
ID 175433
Institutional Source Beutler Lab
Gene Symbol Ghdc
Ensembl Gene ENSMUSG00000017747
Gene Name GH3 domain containing
Synonyms D11Lgp1e
MMRRC Submission 039607-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.118) question?
Stock # R1568 (G1)
Quality Score 225
Status Not validated
Chromosome 11
Chromosomal Location 100656852-100661772 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 100659331 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 322 (I322T)
Ref Sequence ENSEMBL: ENSMUSP00000017891 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000017891] [ENSMUST00000139341]
AlphaFold Q99J23
Predicted Effect probably benign
Transcript: ENSMUST00000017891
AA Change: I322T

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000017891
Gene: ENSMUSG00000017747
AA Change: I322T

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
low complexity region 101 114 N/A INTRINSIC
Pfam:GH3 177 519 1e-62 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000139341
SMART Domains Protein: ENSMUSP00000114260
Gene: ENSMUSG00000017747

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
low complexity region 101 114 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000147682
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.2%
  • 10x: 95.8%
  • 20x: 90.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam18 T G 8: 25,137,799 (GRCm39) probably null Het
Adgb A T 10: 10,318,409 (GRCm39) Y138* probably null Het
Adra1d T C 2: 131,388,092 (GRCm39) R488G possibly damaging Het
Ahnak G A 19: 8,979,739 (GRCm39) G341E probably damaging Het
Ankmy1 T C 1: 92,808,838 (GRCm39) D690G probably damaging Het
Arhgef38 C T 3: 132,838,225 (GRCm39) E21K probably damaging Het
Atp8b2 T C 3: 89,857,155 (GRCm39) M402V probably damaging Het
Atp8b4 G T 2: 126,167,314 (GRCm39) H1062N probably benign Het
Bdnf A G 2: 109,554,139 (GRCm39) H131R probably damaging Het
Cblb C T 16: 51,956,192 (GRCm39) T265M probably damaging Het
Cenpe T A 3: 134,945,519 (GRCm39) M1011K probably benign Het
Clca3a2 A T 3: 144,781,410 (GRCm39) Y711* probably null Het
Clca4a A G 3: 144,658,690 (GRCm39) Y842H probably benign Het
Clspn T A 4: 126,475,310 (GRCm39) M1021K probably benign Het
Cpne8 G T 15: 90,503,845 (GRCm39) R107S probably damaging Het
D6Ertd527e C G 6: 87,088,506 (GRCm39) T223S unknown Het
Dna2 C T 10: 62,784,966 (GRCm39) R28W probably benign Het
Dnah5 T A 15: 28,409,323 (GRCm39) N3580K probably damaging Het
Dsp T C 13: 38,359,123 (GRCm39) I298T probably damaging Het
Dync2h1 T C 9: 7,157,553 (GRCm39) K858R probably null Het
Fasn A T 11: 120,704,075 (GRCm39) V1448E possibly damaging Het
Gins2 T C 8: 121,308,939 (GRCm39) D105G probably damaging Het
Insr A T 8: 3,215,576 (GRCm39) D975E probably benign Het
Klrc3 T C 6: 129,616,510 (GRCm39) D169G probably benign Het
Krt76 T A 15: 101,793,443 (GRCm39) S532C unknown Het
Lamp3 A T 16: 19,492,275 (GRCm39) M323K probably damaging Het
Lgmn T C 12: 102,360,868 (GRCm39) I423M possibly damaging Het
Lpgat1 A T 1: 191,508,538 (GRCm39) T359S possibly damaging Het
Lrguk T A 6: 34,063,373 (GRCm39) I466N probably damaging Het
Magi3 A C 3: 103,996,843 (GRCm39) M234R probably benign Het
Myh14 G A 7: 44,261,122 (GRCm39) R1042* probably null Het
Nfia T G 4: 97,999,461 (GRCm39) Y378D possibly damaging Het
Npffr1 T A 10: 61,462,012 (GRCm39) S383T possibly damaging Het
Or4f57 C A 2: 111,790,585 (GRCm39) V278F probably benign Het
Or52n4 T A 7: 104,293,977 (GRCm39) I199F probably benign Het
Or5b112 C A 19: 13,319,539 (GRCm39) P139Q probably benign Het
Or9s14 T C 1: 92,535,676 (GRCm39) L39P probably damaging Het
Osr1 G A 12: 9,629,798 (GRCm39) probably null Het
Pde4b A C 4: 102,454,896 (GRCm39) R375S probably damaging Het
Pde8a A G 7: 80,942,011 (GRCm39) E150G probably damaging Het
Pkhd1l1 A T 15: 44,408,897 (GRCm39) probably null Het
Ppp3ca A G 3: 136,634,305 (GRCm39) T422A probably benign Het
Proser1 T C 3: 53,385,180 (GRCm39) V354A possibly damaging Het
Rgs20 G T 1: 5,091,050 (GRCm39) R127S probably benign Het
Sanbr T C 11: 23,539,971 (GRCm39) K48E probably damaging Het
Sec22a T C 16: 35,167,998 (GRCm39) D171G probably benign Het
Secisbp2 A G 13: 51,827,143 (GRCm39) E417G possibly damaging Het
Serpinb6b T C 13: 33,158,895 (GRCm39) L32S probably damaging Het
Sf3b1 C G 1: 55,058,554 (GRCm39) E12Q possibly damaging Het
Slc39a10 A T 1: 46,865,375 (GRCm39) S487T probably benign Het
Slc6a1 G T 6: 114,284,731 (GRCm39) G263V probably damaging Het
Spag6 A G 2: 18,737,925 (GRCm39) D265G probably benign Het
Spata31e2 T C 1: 26,724,950 (GRCm39) T77A probably benign Het
Sybu G T 15: 44,582,228 (GRCm39) S132* probably null Het
Virma T C 4: 11,528,776 (GRCm39) S1288P probably damaging Het
Vmn1r229 T A 17: 21,035,067 (GRCm39) V104D probably damaging Het
Vmn1r238 T C 18: 3,123,358 (GRCm39) T19A probably benign Het
Vmn2r86 C T 10: 130,289,010 (GRCm39) V164I probably benign Het
Wfdc13 G T 2: 164,528,854 (GRCm39) A64S probably damaging Het
Zfp873 C A 10: 81,896,113 (GRCm39) H318Q probably damaging Het
Zyg11a A G 4: 108,040,843 (GRCm39) probably null Het
Other mutations in Ghdc
AlleleSourceChrCoordTypePredicted EffectPPH Score
R1489:Ghdc UTSW 11 100,659,083 (GRCm39) missense probably benign 0.39
R1945:Ghdc UTSW 11 100,660,031 (GRCm39) missense probably benign 0.10
R1999:Ghdc UTSW 11 100,660,018 (GRCm39) missense probably benign 0.04
R2150:Ghdc UTSW 11 100,660,018 (GRCm39) missense probably benign 0.04
R4779:Ghdc UTSW 11 100,660,929 (GRCm39) missense possibly damaging 0.93
R4807:Ghdc UTSW 11 100,661,051 (GRCm39) missense probably damaging 1.00
R4910:Ghdc UTSW 11 100,657,814 (GRCm39) missense probably benign 0.26
R4952:Ghdc UTSW 11 100,659,977 (GRCm39) missense probably damaging 1.00
R5001:Ghdc UTSW 11 100,657,660 (GRCm39) missense probably damaging 1.00
R5220:Ghdc UTSW 11 100,660,543 (GRCm39) missense probably damaging 0.98
R5422:Ghdc UTSW 11 100,660,020 (GRCm39) missense probably benign 0.03
R5926:Ghdc UTSW 11 100,659,063 (GRCm39) missense possibly damaging 0.78
R6165:Ghdc UTSW 11 100,659,928 (GRCm39) missense possibly damaging 0.70
R7076:Ghdc UTSW 11 100,660,540 (GRCm39) missense possibly damaging 0.75
R7299:Ghdc UTSW 11 100,658,942 (GRCm39) missense possibly damaging 0.47
R7314:Ghdc UTSW 11 100,659,928 (GRCm39) missense probably damaging 0.99
R7655:Ghdc UTSW 11 100,660,493 (GRCm39) missense probably benign 0.04
R7656:Ghdc UTSW 11 100,660,493 (GRCm39) missense probably benign 0.04
R9419:Ghdc UTSW 11 100,661,081 (GRCm39) missense probably damaging 0.96
R9556:Ghdc UTSW 11 100,658,861 (GRCm39) missense possibly damaging 0.90
R9684:Ghdc UTSW 11 100,661,091 (GRCm39) missense probably benign 0.02
R9710:Ghdc UTSW 11 100,658,863 (GRCm39) missense probably benign 0.00
Z1176:Ghdc UTSW 11 100,660,243 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- AACATTCAGGGTTTGCCCCAGC -3'
(R):5'- TGTCCCGAGTGAGGCGTTACTTTC -3'

Sequencing Primer
(F):5'- CTGACCACAGGACACTGATTGTAG -3'
(R):5'- ACTTTCTGCTGTTGCCTGG -3'
Posted On 2014-04-24