Mutagenetix > Incidental Mutation

Incidental Mutation 'R1595:Csad'

175758

Institutional Source

Beutler Lab

Gene Symbol

Csad

Ensembl Gene

ENSMUSG00000023044

Gene Name

cysteine sulfinic acid decarboxylase

Synonyms

MMRRC Submission

039632-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1595 (G1)

Quality Score

187

Status

Validated

Chromosome

Chromosomal Location

102085432-102112685 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 102086217 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Valine at position 51 (A51V)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023805] [ENSMUST00000230288] [ENSMUST00000230322] [ENSMUST00000230708] [ENSMUST00000231048]

AlphaFold

Q9DBE0

Predicted Effect

probably damaging
Transcript: ENSMUST00000023805
AA Change: A438V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000023805
Gene: ENSMUSG00000023044
AA Change: A438V

Domain	Start	End	E-Value	Type
Pfam:Pyridoxal_deC	49	417	1.4e-113	PFAM
Pfam:Aminotran_5	120	281	4.9e-7	PFAM
low complexity region	482	490	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230253

Predicted Effect

probably damaging
Transcript: ENSMUST00000230288
AA Change: A408V

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

Predicted Effect

probably benign
Transcript: ENSMUST00000230322

Predicted Effect

probably benign
Transcript: ENSMUST00000230342

Predicted Effect

probably benign
Transcript: ENSMUST00000230708

Predicted Effect

probably damaging
Transcript: ENSMUST00000231029
AA Change: A51V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000231048

Meta Mutation Damage Score

0.7572

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 92.1%

Validation Efficiency

97% (77/79)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the group 2 decarboxylase family. A similar protein in rodents plays a role in multiple biological processes as the rate-limiting enzyme in taurine biosynthesis, catalyzing the decarboxylation of cysteinesulfinate to hypotaurine. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Sep 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit neonatal lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb6	C	T	1: 75,153,944 (GRCm39)		probably null	Het
Abcc10	G	T	17: 46,633,164 (GRCm39)	P556H	probably damaging	Het
Abcc9	A	T	6: 142,578,821 (GRCm39)	D914E	probably benign	Het
Adgrf4	A	G	17: 42,978,764 (GRCm39)	V193A	probably benign	Het
Adm	A	T	7: 110,228,298 (GRCm39)	T160S	probably damaging	Het
Ammecr1l	T	C	18: 31,905,173 (GRCm39)		probably null	Het
Angpt2	T	C	8: 18,748,129 (GRCm39)	D377G	probably damaging	Het
Ankfn1	A	G	11: 89,313,593 (GRCm39)		probably null	Het
Arhgap30	T	G	1: 171,235,909 (GRCm39)	M761R	probably benign	Het
Asb4	T	G	6: 5,390,692 (GRCm39)	N28K	probably damaging	Het
Cd177	A	T	7: 24,444,389 (GRCm39)	D696E	probably benign	Het
Cd200	G	A	16: 45,215,214 (GRCm39)	T123I	probably benign	Het
Cfap70	A	G	14: 20,497,604 (GRCm39)	V50A	probably benign	Het
Chaf1b	T	C	16: 93,701,987 (GRCm39)		probably null	Het
Chgb	A	C	2: 132,635,657 (GRCm39)	D533A	probably benign	Het
Col12a1	A	G	9: 79,509,536 (GRCm39)	Y3041H	probably damaging	Het
Crot	T	C	5: 9,024,186 (GRCm39)	N337D	probably benign	Het
Cstdc7	T	C	18: 42,306,454 (GRCm39)	M7T	probably benign	Het
Cyp2b9	A	G	7: 25,900,332 (GRCm39)	Y380C	possibly damaging	Het
Dpysl2	G	T	14: 67,052,952 (GRCm39)	A299E	probably damaging	Het
Efcc1	A	G	6: 87,708,440 (GRCm39)	E189G	probably damaging	Het
Egfr	T	C	11: 16,856,847 (GRCm39)	I940T	probably damaging	Het
Etnk2	T	G	1: 133,300,917 (GRCm39)	L228R	possibly damaging	Het
Fitm2	A	G	2: 163,311,610 (GRCm39)	I201T	probably benign	Het
Foxo1	A	T	3: 52,253,375 (GRCm39)	M513L	probably benign	Het
Galnt16	A	T	12: 80,637,410 (GRCm39)	K379I	probably damaging	Het
Gm57858	C	T	3: 36,073,146 (GRCm39)	A379T	probably damaging	Het
Gtf2a1	T	A	12: 91,556,323 (GRCm39)	N6Y	probably damaging	Het
Kcnc1	G	A	7: 46,077,010 (GRCm39)	V271M	probably benign	Het
Klhdc8b	T	A	9: 108,328,362 (GRCm39)	D30V	probably damaging	Het
Lrrc7	G	A	3: 157,882,914 (GRCm39)	Q448*	probably null	Het
Med29	T	C	7: 28,091,928 (GRCm39)	D54G	probably damaging	Het
Mfn2	T	C	4: 147,979,153 (GRCm39)	T60A	probably benign	Het
Mroh1	T	C	15: 76,317,730 (GRCm39)		probably benign	Het
Mxd1	A	T	6: 86,628,453 (GRCm39)	V149E	possibly damaging	Het
Naip6	A	T	13: 100,435,602 (GRCm39)	Y974N	probably damaging	Het
Ndn	C	T	7: 61,998,256 (GRCm39)	P34L	probably benign	Het
Nhsl1	G	T	10: 18,402,096 (GRCm39)	K1107N	probably damaging	Het
Nlrc3	T	C	16: 3,783,166 (GRCm39)	E81G	probably benign	Het
Or10al3	G	T	17: 38,012,004 (GRCm39)	A148S	probably benign	Het
Or9e1	G	T	11: 58,732,478 (GRCm39)	M179I	probably benign	Het
Osbpl5	C	T	7: 143,256,955 (GRCm39)	V392M	possibly damaging	Het
Pcdhb22	T	A	18: 37,653,506 (GRCm39)	V401E	probably damaging	Het
Pcm1	T	A	8: 41,762,672 (GRCm39)	H1444Q	probably damaging	Het
Pdlim2	A	G	14: 70,402,193 (GRCm39)	Y308H	probably damaging	Het
Phf14	T	G	6: 11,988,752 (GRCm39)	L664R	possibly damaging	Het
Phkb	T	C	8: 86,753,182 (GRCm39)		probably benign	Het
Ptchd3	T	A	11: 121,721,420 (GRCm39)	F98I	probably damaging	Het
Ptprt	C	T	2: 161,652,469 (GRCm39)		probably null	Het
Rbp3	A	T	14: 33,678,155 (GRCm39)	H701L	possibly damaging	Het
Rgl1	T	C	1: 152,550,774 (GRCm39)		probably benign	Het
Satb1	A	T	17: 52,089,729 (GRCm39)	S373T	possibly damaging	Het
Scn3a	T	A	2: 65,329,323 (GRCm39)	Y769F	probably damaging	Het
Senp7	A	G	16: 56,005,131 (GRCm39)	I922V	probably damaging	Het
Serpina3g	A	G	12: 104,205,531 (GRCm39)	E90G	probably benign	Het
Sh3rf2	C	T	18: 42,244,353 (GRCm39)	T273I	probably damaging	Het
Slc15a3	A	G	19: 10,831,675 (GRCm39)	T350A	probably benign	Het
Socs5	T	C	17: 87,441,623 (GRCm39)	C188R	probably damaging	Het
Tacr1	A	G	6: 82,380,723 (GRCm39)	T45A	probably benign	Het
Th	A	G	7: 142,450,745 (GRCm39)	V117A	probably benign	Het
Thpo	C	A	16: 20,547,206 (GRCm39)	D81Y	probably damaging	Het
Tmem229b-ps	A	G	10: 53,351,385 (GRCm39)		noncoding transcript	Het
Trpc4	A	G	3: 54,223,236 (GRCm39)	E724G	probably benign	Het
Ttn	T	C	2: 76,576,977 (GRCm39)	T24639A	probably damaging	Het
Ulk4	A	G	9: 120,873,904 (GRCm39)	S1176P	probably damaging	Het
Urgcp	T	C	11: 5,667,447 (GRCm39)	D297G	probably damaging	Het
Vmn1r168	G	A	7: 23,240,620 (GRCm39)	G159D	probably damaging	Het
Vmn1r67	A	T	7: 10,181,597 (GRCm39)	N226I	probably benign	Het
Vmn2r27	T	C	6: 124,208,574 (GRCm39)	E57G	probably benign	Het
Zdhhc14	G	T	17: 5,543,831 (GRCm39)	R37L	probably benign	Het
Zfp512b	G	A	2: 181,230,229 (GRCm39)	T499I	probably damaging	Het
Zmym2	A	T	14: 57,158,187 (GRCm39)	K575N	probably benign	Het

Other mutations in Csad

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01563:Csad	APN	15	102,095,598 (GRCm39)	missense	probably damaging	1.00
IGL01769:Csad	APN	15	102,088,516 (GRCm39)	missense	probably benign	0.02
IGL02254:Csad	APN	15	102,094,872 (GRCm39)	nonsense	probably null
dejavu	UTSW	15	102,088,407 (GRCm39)	missense	probably damaging	1.00
dell	UTSW	15	102,087,041 (GRCm39)	missense	probably damaging	1.00
farmer	UTSW	15	102,095,599 (GRCm39)	missense	probably damaging	1.00
lenovo	UTSW	15	102,087,469 (GRCm39)	missense	probably null	1.00
PIT4382001:Csad	UTSW	15	102,097,085 (GRCm39)	missense	probably benign	0.00
R0701:Csad	UTSW	15	102,087,571 (GRCm39)	missense	probably benign	0.42
R1707:Csad	UTSW	15	102,088,407 (GRCm39)	missense	probably damaging	1.00
R2107:Csad	UTSW	15	102,087,469 (GRCm39)	missense	probably null	1.00
R2196:Csad	UTSW	15	102,096,028 (GRCm39)	missense	probably benign	0.00
R2275:Csad	UTSW	15	102,095,557 (GRCm39)	missense	probably damaging	0.98
R2504:Csad	UTSW	15	102,097,102 (GRCm39)	start codon destroyed	probably null	0.97
R2928:Csad	UTSW	15	102,086,139 (GRCm39)	missense	probably damaging	1.00
R3924:Csad	UTSW	15	102,086,991 (GRCm39)	missense	probably benign	0.05
R6235:Csad	UTSW	15	102,087,041 (GRCm39)	missense	probably damaging	1.00
R6418:Csad	UTSW	15	102,087,958 (GRCm39)	missense	probably damaging	0.96
R7612:Csad	UTSW	15	102,097,357 (GRCm39)	unclassified	probably benign
R7742:Csad	UTSW	15	102,095,599 (GRCm39)	missense	probably damaging	1.00
R8158:Csad	UTSW	15	102,086,197 (GRCm39)	missense	probably damaging	1.00
R9520:Csad	UTSW	15	102,097,102 (GRCm39)	start codon destroyed	probably null	0.45

Predicted Primers

PCR Primer
(F):5'- TTGAGAACCCAGGAGACTACGCAG -3'
(R):5'- ACAGCTCAGAAATATGCCGGGAAC -3'

Sequencing Primer
(F):5'- ACTACGCAGAGCTTGGGTG -3'
(R):5'- TGCTGAATATCAGAGACAGGTC -3'

Posted On

2014-04-24