Incidental Mutation 'R1602:Vmn2r55'
ID 176203
Institutional Source Beutler Lab
Gene Symbol Vmn2r55
Ensembl Gene ENSMUSG00000091045
Gene Name vomeronasal 2, receptor 55
Synonyms
MMRRC Submission 039639-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.098) question?
Stock # R1602 (G1)
Quality Score 167
Status Not validated
Chromosome 7
Chromosomal Location 12385633-12422855 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 12386571 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Cysteine to Serine at position 470 (C470S)
Ref Sequence ENSEMBL: ENSMUSP00000133483 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000172743]
AlphaFold A0A3B2W3J6
Predicted Effect probably damaging
Transcript: ENSMUST00000172743
AA Change: C470S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000133483
Gene: ENSMUSG00000091045
AA Change: C470S

DomainStartEndE-ValueType
Pfam:ANF_receptor 5 397 3.4e-57 PFAM
Pfam:7tm_3 525 762 3.7e-54 PFAM
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.4%
  • 20x: 89.4%
Validation Efficiency 91% (49/54)
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ankrd12 A T 17: 66,290,683 (GRCm39) Y1583* probably null Het
Ankrd34c T C 9: 89,611,058 (GRCm39) T428A possibly damaging Het
Arfgef1 G C 1: 10,275,115 (GRCm39) I312M probably benign Het
Atr T C 9: 95,833,610 (GRCm39) L2620P probably damaging Het
Ccdc110 A G 8: 46,391,955 (GRCm39) Y54C probably benign Het
Cecr2 T C 6: 120,732,548 (GRCm39) V480A possibly damaging Het
Chfr A G 5: 110,299,531 (GRCm39) D308G probably benign Het
Cit T A 5: 116,135,789 (GRCm39) I1919N probably damaging Het
Ctsc T A 7: 87,927,512 (GRCm39) D34E possibly damaging Het
Diaph3 T A 14: 87,328,594 (GRCm39) probably benign Het
Dnah6 T A 6: 73,044,452 (GRCm39) I3220F probably damaging Het
Eif1ad16 C A 12: 87,985,134 (GRCm39) E136D probably benign Het
Eif4a3l1 G A 6: 136,305,778 (GRCm39) A80T probably damaging Het
Elmod3 A G 6: 72,546,242 (GRCm39) probably null Het
Fgd5 T C 6: 92,043,165 (GRCm39) V1215A possibly damaging Het
Filip1 T C 9: 79,727,873 (GRCm39) M249V probably damaging Het
Fmn1 C T 2: 113,355,968 (GRCm39) P803L unknown Het
Gcfc2 A G 6: 81,921,401 (GRCm39) K469R probably damaging Het
Itgad A G 7: 127,790,111 (GRCm39) T637A probably damaging Het
Kank2 T C 9: 21,681,133 (GRCm39) S799G probably damaging Het
Kcnc4 A T 3: 107,355,520 (GRCm39) D309E possibly damaging Het
Lamc2 G A 1: 153,002,774 (GRCm39) T1069M probably benign Het
Lepr T A 4: 101,602,842 (GRCm39) M210K possibly damaging Het
Lig3 T C 11: 82,683,020 (GRCm39) probably null Het
Oat G T 7: 132,171,736 (GRCm39) T33K probably benign Het
Or2ad1 T C 13: 21,326,820 (GRCm39) M136V probably damaging Het
Or4b1d A G 2: 89,969,399 (GRCm39) F28S probably damaging Het
Or7c70 T A 10: 78,682,802 (GRCm39) M316L probably benign Het
Pcnx3 G T 19: 5,722,543 (GRCm39) A1383E probably damaging Het
Pctp T C 11: 89,879,561 (GRCm39) Y100C probably damaging Het
Pex6 G T 17: 47,023,063 (GRCm39) R213L probably benign Het
Phlpp2 T C 8: 110,660,655 (GRCm39) L770S possibly damaging Het
Pkn2 A T 3: 142,559,299 (GRCm39) D75E possibly damaging Het
Pla2g12b T C 10: 59,257,375 (GRCm39) probably null Het
Plch2 C T 4: 155,068,907 (GRCm39) V1135I probably damaging Het
Pskh1 T A 8: 106,639,453 (GRCm39) S44R probably benign Het
Ptpra G T 2: 30,327,602 (GRCm39) A119S probably benign Het
Shld2 A G 14: 33,989,607 (GRCm39) I433T probably damaging Het
Slfn3 A G 11: 83,103,541 (GRCm39) I137M probably damaging Het
St6galnac1 A T 11: 116,660,113 (GRCm39) S67T probably benign Het
Timd5 T C 11: 46,426,415 (GRCm39) I174T probably benign Het
Treml1 A G 17: 48,671,917 (GRCm39) E137G probably damaging Het
Ubr2 A C 17: 47,251,987 (GRCm39) C1518G probably benign Het
Other mutations in Vmn2r55
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02684:Vmn2r55 APN 7 12,404,887 (GRCm39) missense probably damaging 1.00
IGL03035:Vmn2r55 APN 7 12,404,743 (GRCm39) missense probably benign 0.01
IGL03115:Vmn2r55 APN 7 12,404,558 (GRCm39) missense probably damaging 1.00
IGL03251:Vmn2r55 APN 7 12,405,120 (GRCm39) splice site probably benign
R0140:Vmn2r55 UTSW 7 12,402,104 (GRCm39) missense possibly damaging 0.58
R0511:Vmn2r55 UTSW 7 12,404,945 (GRCm39) missense possibly damaging 0.88
R1281:Vmn2r55 UTSW 7 12,404,825 (GRCm39) missense probably benign 0.02
R1564:Vmn2r55 UTSW 7 12,418,678 (GRCm39) missense probably damaging 1.00
R1785:Vmn2r55 UTSW 7 12,402,111 (GRCm39) missense probably damaging 0.98
R2939:Vmn2r55 UTSW 7 12,385,832 (GRCm39) missense probably damaging 1.00
R2993:Vmn2r55 UTSW 7 12,418,882 (GRCm39) missense probably damaging 1.00
R3151:Vmn2r55 UTSW 7 12,404,634 (GRCm39) missense probably benign 0.06
R4272:Vmn2r55 UTSW 7 12,402,106 (GRCm39) missense probably benign 0.38
R4589:Vmn2r55 UTSW 7 12,404,822 (GRCm39) missense probably damaging 0.99
R4624:Vmn2r55 UTSW 7 12,404,627 (GRCm39) missense possibly damaging 0.83
R4965:Vmn2r55 UTSW 7 12,404,478 (GRCm39) missense possibly damaging 0.91
R5294:Vmn2r55 UTSW 7 12,385,791 (GRCm39) missense probably damaging 1.00
R5364:Vmn2r55 UTSW 7 12,404,830 (GRCm39) missense possibly damaging 0.51
R5395:Vmn2r55 UTSW 7 12,385,874 (GRCm39) missense probably damaging 1.00
R5401:Vmn2r55 UTSW 7 12,385,871 (GRCm39) missense probably benign
R5701:Vmn2r55 UTSW 7 12,404,492 (GRCm39) missense probably benign 0.00
R5771:Vmn2r55 UTSW 7 12,404,959 (GRCm39) missense probably damaging 1.00
R5846:Vmn2r55 UTSW 7 12,404,492 (GRCm39) missense probably benign 0.05
R6148:Vmn2r55 UTSW 7 12,402,069 (GRCm39) missense probably benign 0.01
R6159:Vmn2r55 UTSW 7 12,385,698 (GRCm39) missense probably damaging 1.00
R6541:Vmn2r55 UTSW 7 12,404,939 (GRCm39) missense probably damaging 1.00
R7286:Vmn2r55 UTSW 7 12,386,000 (GRCm39) missense probably damaging 0.99
R7483:Vmn2r55 UTSW 7 12,404,755 (GRCm39) missense probably benign 0.00
R8269:Vmn2r55 UTSW 7 12,404,585 (GRCm39) missense possibly damaging 0.86
R8749:Vmn2r55 UTSW 7 12,385,796 (GRCm39) missense probably damaging 1.00
R8914:Vmn2r55 UTSW 7 12,405,024 (GRCm39) missense probably benign 0.09
R9049:Vmn2r55 UTSW 7 12,418,908 (GRCm39) missense probably damaging 1.00
R9175:Vmn2r55 UTSW 7 12,385,793 (GRCm39) missense possibly damaging 0.67
R9344:Vmn2r55 UTSW 7 12,385,782 (GRCm39) nonsense probably null
R9498:Vmn2r55 UTSW 7 12,404,812 (GRCm39) missense probably damaging 1.00
R9715:Vmn2r55 UTSW 7 12,402,061 (GRCm39) missense probably damaging 1.00
Z1177:Vmn2r55 UTSW 7 12,405,106 (GRCm39) missense possibly damaging 0.91
Z1177:Vmn2r55 UTSW 7 12,385,764 (GRCm39) missense possibly damaging 0.83
Predicted Primers PCR Primer
(F):5'- TGTTGTTGGCCCTAACCACAGG -3'
(R):5'- CGTGTTCAAAGCCAGGTTGTGTTAC -3'

Sequencing Primer
(F):5'- TATCCCGGTGCTTCAGGAAC -3'
(R):5'- CAGTACACACTTTTAGGACAGATAC -3'
Posted On 2014-04-24