Incidental Mutation 'R1608:Cbfa2t3'
ID 176628
Institutional Source Beutler Lab
Gene Symbol Cbfa2t3
Ensembl Gene ENSMUSG00000006362
Gene Name CBFA2/RUNX1 translocation partner 3
Synonyms MTGR2, A630044F12Rik, ETO-2, Eto2
MMRRC Submission 039645-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1608 (G1)
Quality Score 119
Status Not validated
Chromosome 8
Chromosomal Location 123351880-123425848 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 123374448 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Aspartic acid at position 99 (V99D)
Ref Sequence ENSEMBL: ENSMUSP00000118997 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000006525] [ENSMUST00000064674] [ENSMUST00000127664] [ENSMUST00000127984] [ENSMUST00000134045]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000006525
SMART Domains Protein: ENSMUSP00000006525
Gene: ENSMUSG00000006362

DomainStartEndE-ValueType
low complexity region 12 27 N/A INTRINSIC
TAFH 87 177 5.46e-52 SMART
low complexity region 248 257 N/A INTRINSIC
Pfam:NHR2 295 361 3.6e-41 PFAM
PDB:2KYG|C 395 424 3e-10 PDB
Pfam:zf-MYND 472 508 2.6e-10 PFAM
low complexity region 529 552 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000064674
AA Change: V64D

PolyPhen 2 Score 0.957 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000065728
Gene: ENSMUSG00000006362
AA Change: V64D

DomainStartEndE-ValueType
low complexity region 12 27 N/A INTRINSIC
TAFH 113 203 5.46e-52 SMART
low complexity region 274 283 N/A INTRINSIC
Pfam:NHR2 321 387 7.1e-41 PFAM
PDB:2KYG|C 421 450 1e-10 PDB
Pfam:zf-MYND 498 534 7.1e-10 PFAM
low complexity region 555 578 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000127664
SMART Domains Protein: ENSMUSP00000118564
Gene: ENSMUSG00000092329

DomainStartEndE-ValueType
Pfam:Glycos_transf_2 104 287 7.4e-31 PFAM
Pfam:Glyco_transf_7C 261 331 4.9e-8 PFAM
RICIN 406 531 9.28e-27 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000127984
AA Change: V99D

PolyPhen 2 Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000118997
Gene: ENSMUSG00000006362
AA Change: V99D

DomainStartEndE-ValueType
low complexity region 47 62 N/A INTRINSIC
TAFH 148 238 5.46e-52 SMART
low complexity region 309 318 N/A INTRINSIC
Pfam:NHR2 356 422 2.3e-38 PFAM
PDB:2KYG|C 456 485 2e-10 PDB
Pfam:zf-MYND 533 569 6.9e-10 PFAM
low complexity region 590 613 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000134045
AA Change: V64D

PolyPhen 2 Score 0.772 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000117630
Gene: ENSMUSG00000006362
AA Change: V64D

DomainStartEndE-ValueType
low complexity region 12 27 N/A INTRINSIC
Pfam:TAFH 111 185 3.7e-33 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000142535
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148630
Predicted Effect noncoding transcript
Transcript: ENSMUST00000147374
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.5%
  • 20x: 89.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the myeloid translocation gene family which interact with DNA-bound transcription factors and recruit a range of corepressors to facilitate transcriptional repression. The t(16;21)(q24;q22) translocation is one of the less common karyotypic abnormalities in acute myeloid leukemia. The translocation produces a chimeric gene made up of the 5'-region of the runt-related transcription factor 1 gene fused to the 3'-region of this gene. This gene is also a putative breast tumor suppressor. Alternative splicing results in transcript variants. [provided by RefSeq, Nov 2010]
PHENOTYPE: Mice that are homozygote null for this gene display skewing of the early myeloid progenitor cells toward the granulocytic/macrophage lineage while reducing the numbers of megakaryocyte-erythroid progenitor cells. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts15 A G 9: 30,813,775 (GRCm39) S797P probably damaging Het
Akap9 T C 5: 4,011,783 (GRCm39) Y829H probably damaging Het
Anp32a A G 9: 62,279,375 (GRCm39) D74G probably damaging Het
B3gat1 T C 9: 26,663,112 (GRCm39) I13T probably damaging Het
Celsr2 C T 3: 108,309,799 (GRCm39) C1600Y probably damaging Het
Ddx31 T A 2: 28,749,078 (GRCm39) N291K probably damaging Het
Dennd1a T G 2: 37,742,446 (GRCm39) M3L probably benign Het
Dnah12 C T 14: 26,488,147 (GRCm39) P1017L probably damaging Het
Dnajc6 A T 4: 101,456,364 (GRCm39) D86V probably damaging Het
Evx2 T G 2: 74,488,195 (GRCm39) K208N probably damaging Het
F13a1 A G 13: 37,052,785 (GRCm39) V718A probably damaging Het
Fcho2 T C 13: 98,862,706 (GRCm39) D757G probably benign Het
Fmnl2 A G 2: 52,995,549 (GRCm39) E424G probably damaging Het
Fryl C T 5: 73,232,094 (GRCm39) W424* probably null Het
Gata3 G T 2: 9,879,579 (GRCm39) Y97* probably null Het
Gm15446 T A 5: 110,090,323 (GRCm39) C192S probably damaging Het
Hdac10 A T 15: 89,009,521 (GRCm39) D470E probably benign Het
Ier2 A G 8: 85,389,055 (GRCm39) L109P probably benign Het
Iftap T C 2: 101,440,916 (GRCm39) E29G probably damaging Het
Kcnh2 T C 5: 24,527,217 (GRCm39) T559A probably benign Het
Khk C T 5: 31,087,938 (GRCm39) A204V probably damaging Het
Kndc1 T A 7: 139,507,321 (GRCm39) M1169K possibly damaging Het
Krtap31-1 A G 11: 99,798,919 (GRCm39) S41G probably benign Het
Nabp1 T C 1: 51,512,162 (GRCm39) probably null Het
Nphp3 A G 9: 103,913,039 (GRCm39) D939G probably benign Het
Or5e1 A T 7: 108,354,309 (GRCm39) N82I probably damaging Het
Plcg2 T C 8: 118,340,974 (GRCm39) I1089T possibly damaging Het
Ptk2 A T 15: 73,134,424 (GRCm39) D558E probably damaging Het
Serpinb6d A G 13: 33,853,112 (GRCm39) D168G probably benign Het
Shisa8 G A 15: 82,092,756 (GRCm39) P189L probably damaging Het
Shkbp1 A G 7: 27,054,204 (GRCm39) V89A probably benign Het
Slc40a1 C T 1: 45,950,457 (GRCm39) A332T probably damaging Het
Slc44a3 A T 3: 121,291,496 (GRCm39) Y373* probably null Het
Slf2 T C 19: 44,937,440 (GRCm39) V722A probably benign Het
Spanxn4 A G 12: 62,734,624 (GRCm39) noncoding transcript Het
Stag3 T A 5: 138,296,901 (GRCm39) probably null Het
Tanc1 T C 2: 59,628,038 (GRCm39) I612T possibly damaging Het
Thbs2 T A 17: 14,906,043 (GRCm39) M286L probably benign Het
Top1 T A 2: 160,545,515 (GRCm39) N294K probably benign Het
Tpr T G 1: 150,302,644 (GRCm39) L1381V probably damaging Het
Trpm8 T G 1: 88,254,154 (GRCm39) S126A probably benign Het
Ttc41 A G 10: 86,611,857 (GRCm39) Y1075C probably damaging Het
Ubox5 C T 2: 130,439,376 (GRCm39) G418D probably benign Het
Vmn1r67 T C 7: 10,180,907 (GRCm39) V57A possibly damaging Het
Zbtb5 T C 4: 44,993,500 (GRCm39) H628R probably damaging Het
Zfp810 T C 9: 22,190,216 (GRCm39) I231V probably benign Het
Other mutations in Cbfa2t3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02095:Cbfa2t3 APN 8 123,360,232 (GRCm39) missense probably damaging 1.00
IGL02578:Cbfa2t3 APN 8 123,360,187 (GRCm39) missense possibly damaging 0.83
IGL02934:Cbfa2t3 APN 8 123,374,497 (GRCm39) missense probably benign 0.03
IGL03089:Cbfa2t3 APN 8 123,361,873 (GRCm39) missense probably damaging 1.00
R0196:Cbfa2t3 UTSW 8 123,360,076 (GRCm39) missense possibly damaging 0.77
R0365:Cbfa2t3 UTSW 8 123,361,799 (GRCm39) missense probably benign 0.23
R0395:Cbfa2t3 UTSW 8 123,365,690 (GRCm39) missense probably benign 0.09
R0784:Cbfa2t3 UTSW 8 123,377,226 (GRCm39) splice site probably benign
R0835:Cbfa2t3 UTSW 8 123,374,517 (GRCm39) missense probably benign 0.00
R2008:Cbfa2t3 UTSW 8 123,370,032 (GRCm39) missense probably damaging 0.99
R2088:Cbfa2t3 UTSW 8 123,364,725 (GRCm39) unclassified probably benign
R2095:Cbfa2t3 UTSW 8 123,361,727 (GRCm39) missense probably benign
R4079:Cbfa2t3 UTSW 8 123,374,434 (GRCm39) splice site probably null
R4175:Cbfa2t3 UTSW 8 123,370,057 (GRCm39) missense probably damaging 1.00
R5013:Cbfa2t3 UTSW 8 123,365,598 (GRCm39) missense possibly damaging 0.95
R5141:Cbfa2t3 UTSW 8 123,361,760 (GRCm39) missense probably benign 0.24
R5391:Cbfa2t3 UTSW 8 123,360,134 (GRCm39) nonsense probably null
R6067:Cbfa2t3 UTSW 8 123,370,236 (GRCm39) missense probably benign 0.00
R6078:Cbfa2t3 UTSW 8 123,370,236 (GRCm39) missense probably benign 0.00
R6192:Cbfa2t3 UTSW 8 123,361,135 (GRCm39) missense probably benign 0.00
R6281:Cbfa2t3 UTSW 8 123,360,148 (GRCm39) missense probably damaging 1.00
R6520:Cbfa2t3 UTSW 8 123,362,540 (GRCm39) missense probably benign 0.02
R6936:Cbfa2t3 UTSW 8 123,374,478 (GRCm39) missense probably damaging 0.97
R7154:Cbfa2t3 UTSW 8 123,364,883 (GRCm39) nonsense probably null
R7196:Cbfa2t3 UTSW 8 123,365,729 (GRCm39) missense probably benign 0.26
R7295:Cbfa2t3 UTSW 8 123,364,768 (GRCm39) missense probably benign 0.02
R7514:Cbfa2t3 UTSW 8 123,361,865 (GRCm39) missense probably damaging 1.00
R7616:Cbfa2t3 UTSW 8 123,360,076 (GRCm39) missense possibly damaging 0.87
R8070:Cbfa2t3 UTSW 8 123,369,720 (GRCm39) missense possibly damaging 0.81
R8485:Cbfa2t3 UTSW 8 123,357,517 (GRCm39) missense probably damaging 0.97
R8534:Cbfa2t3 UTSW 8 123,365,653 (GRCm39) missense probably damaging 1.00
R9718:Cbfa2t3 UTSW 8 123,364,936 (GRCm39) missense probably benign 0.25
U15987:Cbfa2t3 UTSW 8 123,370,236 (GRCm39) missense probably benign 0.00
Z1176:Cbfa2t3 UTSW 8 123,425,634 (GRCm39) start gained probably benign
Z1177:Cbfa2t3 UTSW 8 123,357,496 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- ATGTTGAGGATGCAGCTCAGTCGG -3'
(R):5'- CAGTGGCAACAGTGTGGTCTTTAGG -3'

Sequencing Primer
(F):5'- tgtgtaagtacactgtagctgtc -3'
(R):5'- GTCTTTAGGACTGCCACTGC -3'
Posted On 2014-04-24