Incidental Mutation 'R1609:Or4c113'
| ID |
176662 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4c113
|
| Ensembl Gene |
ENSMUSG00000075105 |
| Gene Name |
olfactory receptor family 4 subfamily C member 113 |
| Synonyms |
GA_x6K02T2Q125-50536041-50535106, Olfr1218, MOR233-12 |
| MMRRC Submission |
039646-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.071)
|
| Stock # |
R1609 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
88884833-88885768 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 88885688 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Phenylalanine to Leucine
at position 27
(F27L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149671
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000099798]
[ENSMUST00000213609]
[ENSMUST00000215048]
[ENSMUST00000215054]
|
| AlphaFold |
L7MU54 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000099798
AA Change: F27L
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000097386
Gene: ENSMUSG00000075105
AA Change: F27L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
303 |
1.4e-45 |
PFAM |
|
Pfam:7tm_1
|
39 |
286 |
2.2e-16 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213609
AA Change: F27L
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000215048
AA Change: F27L
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000215054
AA Change: F27L
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 98.9%
- 3x: 98.0%
- 10x: 95.1%
- 20x: 88.1%
|
| Validation Efficiency |
96% (49/51) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acot2 |
C |
T |
12: 84,039,630 (GRCm39) |
R380C |
possibly damaging |
Het |
| Allc |
A |
T |
12: 28,603,993 (GRCm39) |
D363E |
probably damaging |
Het |
| Anxa2 |
TCCC |
TCC |
9: 69,397,036 (GRCm39) |
|
probably null |
Het |
| App |
C |
A |
16: 84,876,837 (GRCm39) |
V185L |
probably damaging |
Het |
| Atp5if1 |
T |
C |
4: 132,258,078 (GRCm39) |
D47G |
probably benign |
Het |
| Auh |
G |
A |
13: 52,989,532 (GRCm39) |
P308L |
probably benign |
Het |
| Cbr4 |
T |
A |
8: 61,956,192 (GRCm39) |
Y220N |
probably damaging |
Het |
| Ccdc6 |
C |
A |
10: 70,002,877 (GRCm39) |
Q203K |
probably damaging |
Het |
| Cntnap2 |
T |
C |
6: 45,992,264 (GRCm39) |
V397A |
probably benign |
Het |
| Dmxl2 |
A |
G |
9: 54,316,547 (GRCm39) |
I1613T |
possibly damaging |
Het |
| Dnah14 |
T |
C |
1: 181,577,742 (GRCm39) |
S3020P |
probably damaging |
Het |
| Dnah7b |
T |
C |
1: 46,392,126 (GRCm39) |
L3829P |
probably damaging |
Het |
| Fbxw25 |
C |
T |
9: 109,492,578 (GRCm39) |
C53Y |
probably benign |
Het |
| Fndc1 |
G |
T |
17: 7,991,598 (GRCm39) |
H699Q |
unknown |
Het |
| Gnaq |
G |
A |
19: 16,360,618 (GRCm39) |
V314M |
possibly damaging |
Het |
| Gpr158 |
A |
G |
2: 21,788,104 (GRCm39) |
T582A |
possibly damaging |
Het |
| Mapk1 |
T |
C |
16: 16,856,170 (GRCm39) |
|
probably benign |
Het |
| Med1 |
T |
A |
11: 98,051,996 (GRCm39) |
H456L |
possibly damaging |
Het |
| Myo6 |
G |
A |
9: 80,195,499 (GRCm39) |
|
probably null |
Het |
| Nipbl |
A |
G |
15: 8,396,148 (GRCm39) |
Y142H |
probably damaging |
Het |
| Or8k24 |
A |
G |
2: 86,215,838 (GRCm39) |
I308T |
probably benign |
Het |
| Or8k33 |
A |
C |
2: 86,383,949 (GRCm39) |
V173G |
probably damaging |
Het |
| Pgbd5 |
T |
C |
8: 125,160,750 (GRCm39) |
D39G |
probably benign |
Het |
| Pnisr |
G |
T |
4: 21,871,440 (GRCm39) |
G387* |
probably null |
Het |
| Pnpla6 |
T |
C |
8: 3,567,135 (GRCm39) |
L61P |
probably damaging |
Het |
| Prkra |
A |
T |
2: 76,463,936 (GRCm39) |
I242N |
probably benign |
Het |
| Rp1 |
A |
G |
1: 4,419,424 (GRCm39) |
S563P |
probably damaging |
Het |
| Rtp3 |
A |
G |
9: 110,815,085 (GRCm39) |
|
probably benign |
Het |
| Sema3d |
A |
G |
5: 12,591,023 (GRCm39) |
T301A |
probably damaging |
Het |
| Setmar |
A |
G |
6: 108,053,076 (GRCm39) |
D190G |
probably benign |
Het |
| Sf3b2 |
A |
G |
19: 5,345,061 (GRCm39) |
|
probably benign |
Het |
| Taf4b |
A |
G |
18: 14,968,938 (GRCm39) |
K692E |
probably damaging |
Het |
| Tktl2 |
A |
G |
8: 66,965,504 (GRCm39) |
E354G |
probably benign |
Het |
| Tspan4 |
A |
G |
7: 141,071,557 (GRCm39) |
T135A |
probably damaging |
Het |
| Vmn1r22 |
G |
T |
6: 57,877,733 (GRCm39) |
Y81* |
probably null |
Het |
| Vmn2r31 |
T |
C |
7: 7,387,888 (GRCm39) |
E561G |
probably damaging |
Het |
| Xrn1 |
A |
T |
9: 95,856,946 (GRCm39) |
K389N |
probably benign |
Het |
| Zfp277 |
A |
T |
12: 40,378,719 (GRCm39) |
N379K |
probably damaging |
Het |
|
| Other mutations in Or4c113 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01652:Or4c113
|
APN |
2 |
88,884,913 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03089:Or4c113
|
APN |
2 |
88,885,357 (GRCm39) |
missense |
probably benign |
0.34 |
|
IGL03387:Or4c113
|
APN |
2 |
88,885,457 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0350:Or4c113
|
UTSW |
2 |
88,885,700 (GRCm39) |
missense |
probably benign |
0.10 |
|
R0699:Or4c113
|
UTSW |
2 |
88,885,636 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R1856:Or4c113
|
UTSW |
2 |
88,885,203 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R1972:Or4c113
|
UTSW |
2 |
88,884,891 (GRCm39) |
missense |
probably benign |
0.05 |
|
R2066:Or4c113
|
UTSW |
2 |
88,885,243 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2921:Or4c113
|
UTSW |
2 |
88,884,843 (GRCm39) |
missense |
probably benign |
0.04 |
|
R2923:Or4c113
|
UTSW |
2 |
88,884,843 (GRCm39) |
missense |
probably benign |
0.04 |
|
R4037:Or4c113
|
UTSW |
2 |
88,885,032 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4585:Or4c113
|
UTSW |
2 |
88,885,498 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R4586:Or4c113
|
UTSW |
2 |
88,885,498 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R5041:Or4c113
|
UTSW |
2 |
88,885,265 (GRCm39) |
nonsense |
probably null |
|
|
R5124:Or4c113
|
UTSW |
2 |
88,885,431 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R5138:Or4c113
|
UTSW |
2 |
88,885,291 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5415:Or4c113
|
UTSW |
2 |
88,885,240 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5501:Or4c113
|
UTSW |
2 |
88,885,230 (GRCm39) |
nonsense |
probably null |
|
|
R5941:Or4c113
|
UTSW |
2 |
88,884,963 (GRCm39) |
missense |
probably benign |
|
|
R5991:Or4c113
|
UTSW |
2 |
88,885,126 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6396:Or4c113
|
UTSW |
2 |
88,885,641 (GRCm39) |
missense |
probably benign |
0.36 |
|
R7047:Or4c113
|
UTSW |
2 |
88,885,490 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8038:Or4c113
|
UTSW |
2 |
88,885,212 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8387:Or4c113
|
UTSW |
2 |
88,885,646 (GRCm39) |
missense |
probably benign |
|
|
R8403:Or4c113
|
UTSW |
2 |
88,884,948 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8794:Or4c113
|
UTSW |
2 |
88,885,477 (GRCm39) |
missense |
probably benign |
|
|
R8907:Or4c113
|
UTSW |
2 |
88,885,542 (GRCm39) |
missense |
probably damaging |
0.98 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCAAATAGCCACGTAGCGGTCATAG -3'
(R):5'- CAGCCCTGGCCTTGAGTTATTCAC -3'
Sequencing Primer
(F):5'- GGCTGCTAGGACAATCATTTC -3'
(R):5'- TCAATTCAAGAGCGTTGTACCC -3'
|
| Posted On |
2014-04-24 |
Incidental Mutation