Incidental Mutation 'R1614:Or4f62'
| ID |
176982 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4f62
|
| Ensembl Gene |
ENSMUSG00000049758 |
| Gene Name |
olfactory receptor family 4 subfamily F member 62 |
| Synonyms |
MOR245-16, GA_x6K02T2Q125-73202172-73203134, Olfr1318 |
| MMRRC Submission |
039651-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.063)
|
| Stock # |
R1614 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
111986243-111987352 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 111986862 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Cysteine to Serine
at position 189
(C189S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151164
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000058176]
[ENSMUST00000214063]
[ENSMUST00000217533]
|
| AlphaFold |
Q7TQW6 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000058176
AA Change: C189S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000051938
Gene: ENSMUSG00000049758
AA Change: C189S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
305 |
2.4e-39 |
PFAM |
|
Pfam:7tm_1
|
41 |
287 |
1.5e-21 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000214063
AA Change: C189S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000215341
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000216873
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000217533
AA Change: C189S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Meta Mutation Damage Score |
0.6467 |
| Coding Region Coverage |
- 1x: 99.0%
- 3x: 98.1%
- 10x: 95.4%
- 20x: 89.4%
|
| Validation Efficiency |
100% (53/53) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Arl9 |
A |
G |
5: 77,158,412 (GRCm39) |
T165A |
probably benign |
Het |
| Atpaf1 |
A |
T |
4: 115,653,954 (GRCm39) |
K201N |
possibly damaging |
Het |
| Cacna1b |
G |
T |
2: 24,580,819 (GRCm39) |
Q676K |
possibly damaging |
Het |
| Ccdc88c |
A |
T |
12: 100,879,243 (GRCm39) |
H1959Q |
probably benign |
Het |
| Cep162 |
T |
C |
9: 87,094,985 (GRCm39) |
D808G |
probably damaging |
Het |
| Chct1 |
T |
G |
11: 85,063,690 (GRCm39) |
S28A |
possibly damaging |
Het |
| Chtf18 |
A |
G |
17: 25,946,064 (GRCm39) |
L42P |
probably benign |
Het |
| Cox7c |
A |
G |
13: 86,193,904 (GRCm39) |
F40L |
probably benign |
Het |
| Dock7 |
C |
T |
4: 98,949,517 (GRCm39) |
V442I |
probably benign |
Het |
| Dst |
T |
C |
1: 34,314,344 (GRCm39) |
F4198S |
probably damaging |
Het |
| Fam13a |
T |
A |
6: 58,917,169 (GRCm39) |
D569V |
probably damaging |
Het |
| Gm6741 |
T |
A |
17: 91,544,424 (GRCm39) |
H62Q |
probably benign |
Het |
| Gnptab |
A |
G |
10: 88,250,451 (GRCm39) |
T172A |
probably benign |
Het |
| Greb1 |
A |
G |
12: 16,751,172 (GRCm39) |
S1013P |
probably damaging |
Het |
| Insl5 |
A |
T |
4: 102,883,846 (GRCm39) |
L25* |
probably null |
Het |
| Ipo13 |
A |
G |
4: 117,761,815 (GRCm39) |
S462P |
probably benign |
Het |
| Itgb1 |
G |
A |
8: 129,446,546 (GRCm39) |
C401Y |
probably damaging |
Het |
| Kcnh7 |
G |
T |
2: 62,680,948 (GRCm39) |
A213E |
probably benign |
Het |
| Kcnv1 |
G |
A |
15: 44,977,840 (GRCm39) |
T66M |
probably damaging |
Het |
| Mesp2 |
T |
C |
7: 79,461,367 (GRCm39) |
S231P |
probably benign |
Het |
| Nabp1 |
T |
C |
1: 51,510,511 (GRCm39) |
N164D |
possibly damaging |
Het |
| Nop53 |
A |
G |
7: 15,679,890 (GRCm39) |
V30A |
probably benign |
Het |
| Or1j17 |
T |
G |
2: 36,578,321 (GRCm39) |
Y102* |
probably null |
Het |
| Or4a73 |
T |
A |
2: 89,421,040 (GRCm39) |
I140L |
possibly damaging |
Het |
| Or4f54 |
T |
A |
2: 111,123,411 (GRCm39) |
V266E |
probably damaging |
Het |
| Pcsk5 |
G |
A |
19: 17,492,620 (GRCm39) |
R918C |
probably damaging |
Het |
| Pecam1 |
T |
C |
11: 106,571,905 (GRCm39) |
D554G |
probably benign |
Het |
| Polr2a |
T |
C |
11: 69,634,199 (GRCm39) |
I744V |
possibly damaging |
Het |
| Pop1 |
C |
A |
15: 34,530,356 (GRCm39) |
A918D |
possibly damaging |
Het |
| Ppp2r5e |
C |
G |
12: 75,516,341 (GRCm39) |
A239P |
probably damaging |
Het |
| Prmt3 |
A |
T |
7: 49,476,467 (GRCm39) |
I359F |
possibly damaging |
Het |
| Proz |
G |
A |
8: 13,116,904 (GRCm39) |
C152Y |
probably damaging |
Het |
| Ptgfr |
A |
C |
3: 151,507,416 (GRCm39) |
Y316D |
probably benign |
Het |
| Ralgapa2 |
G |
T |
2: 146,230,532 (GRCm39) |
S1011Y |
probably damaging |
Het |
| Rnf43 |
C |
T |
11: 87,622,485 (GRCm39) |
R529* |
probably null |
Het |
| Slc17a6 |
G |
A |
7: 51,296,025 (GRCm39) |
|
probably benign |
Het |
| Slc25a19 |
A |
T |
11: 115,507,449 (GRCm39) |
C224* |
probably null |
Het |
| Smarcd3 |
A |
G |
5: 24,799,874 (GRCm39) |
S299P |
possibly damaging |
Het |
| Stard9 |
T |
C |
2: 120,528,156 (GRCm39) |
F1471S |
possibly damaging |
Het |
| Strada |
A |
C |
11: 106,059,145 (GRCm39) |
V211G |
probably damaging |
Het |
| Tom1l1 |
T |
C |
11: 90,574,080 (GRCm39) |
E68G |
probably damaging |
Het |
| Vmn2r27 |
T |
G |
6: 124,200,893 (GRCm39) |
I355L |
probably benign |
Het |
| Vmn2r68 |
A |
T |
7: 84,870,946 (GRCm39) |
M779K |
possibly damaging |
Het |
| Zbtb18 |
T |
C |
1: 177,274,736 (GRCm39) |
L23P |
probably damaging |
Het |
| Zfp112 |
G |
T |
7: 23,826,024 (GRCm39) |
C664F |
probably damaging |
Het |
| Zfp955a |
A |
T |
17: 33,461,306 (GRCm39) |
N275K |
possibly damaging |
Het |
|
| Other mutations in Or4f62 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00089:Or4f62
|
APN |
2 |
111,986,412 (GRCm39) |
missense |
probably benign |
|
|
IGL00923:Or4f62
|
APN |
2 |
111,987,122 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
IGL02800:Or4f62
|
APN |
2 |
111,986,589 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R0012:Or4f62
|
UTSW |
2 |
111,987,171 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R1989:Or4f62
|
UTSW |
2 |
111,986,722 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2428:Or4f62
|
UTSW |
2 |
111,986,787 (GRCm39) |
missense |
probably benign |
0.03 |
|
R2963:Or4f62
|
UTSW |
2 |
111,986,804 (GRCm39) |
nonsense |
probably null |
|
|
R4868:Or4f62
|
UTSW |
2 |
111,986,916 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4960:Or4f62
|
UTSW |
2 |
111,986,697 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5121:Or4f62
|
UTSW |
2 |
111,986,631 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R6218:Or4f62
|
UTSW |
2 |
111,986,701 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6294:Or4f62
|
UTSW |
2 |
111,986,364 (GRCm39) |
missense |
probably benign |
|
|
R6350:Or4f62
|
UTSW |
2 |
111,986,542 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6515:Or4f62
|
UTSW |
2 |
111,986,710 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6722:Or4f62
|
UTSW |
2 |
111,987,227 (GRCm39) |
missense |
probably benign |
|
|
R6829:Or4f62
|
UTSW |
2 |
111,986,139 (GRCm39) |
intron |
probably benign |
|
|
R7186:Or4f62
|
UTSW |
2 |
111,986,507 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7206:Or4f62
|
UTSW |
2 |
111,986,804 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7444:Or4f62
|
UTSW |
2 |
111,987,060 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8293:Or4f62
|
UTSW |
2 |
111,986,598 (GRCm39) |
missense |
probably benign |
0.07 |
|
R8474:Or4f62
|
UTSW |
2 |
111,986,320 (GRCm39) |
missense |
probably benign |
|
|
R8712:Or4f62
|
UTSW |
2 |
111,986,934 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8749:Or4f62
|
UTSW |
2 |
111,986,869 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R8888:Or4f62
|
UTSW |
2 |
111,986,974 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9223:Or4f62
|
UTSW |
2 |
111,986,473 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R9406:Or4f62
|
UTSW |
2 |
111,986,643 (GRCm39) |
missense |
probably benign |
0.04 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGCACAAAGTCATCTCCTTGAACGG -3'
(R):5'- ACGACCACAGTGATGTGAGCTGAG -3'
Sequencing Primer
(F):5'- CATGGCCTATGACAGGTACATTG -3'
(R):5'- CAGTGATGTGAGCTGAGAGAGTG -3'
|
| Posted On |
2014-04-24 |
Incidental Mutation