Incidental Mutation 'R1589:Trappc11'
ID 177729
Institutional Source Beutler Lab
Gene Symbol Trappc11
Ensembl Gene ENSMUSG00000038102
Gene Name trafficking protein particle complex 11
Synonyms D030016E14Rik
MMRRC Submission 039626-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1589 (G1)
Quality Score 225
Status Validated
Chromosome 8
Chromosomal Location 47943163-47986505 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 47954715 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 908 (D908E)
Ref Sequence ENSEMBL: ENSMUSP00000047562 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000039061] [ENSMUST00000120987]
AlphaFold B2RXC1
Predicted Effect probably damaging
Transcript: ENSMUST00000039061
AA Change: D908E

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000047562
Gene: ENSMUSG00000038102
AA Change: D908E

DomainStartEndE-ValueType
Pfam:Foie-gras_1 263 522 3e-78 PFAM
Pfam:Gryzun 978 1114 3.9e-10 PFAM
Pfam:Gryzun-like 1036 1095 2.4e-28 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000120987
SMART Domains Protein: ENSMUSP00000113779
Gene: ENSMUSG00000038102

DomainStartEndE-ValueType
Pfam:Gryzun 1 155 4e-25 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123958
Predicted Effect noncoding transcript
Transcript: ENSMUST00000125065
Meta Mutation Damage Score 0.2421 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.2%
  • 10x: 95.8%
  • 20x: 90.8%
Validation Efficiency 97% (89/92)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a subunit of the TRAPP (transport protein particle) tethering complex, which functions in intracellular vesicle trafficking. This subunit is involved in early stage endoplasmic reticulum-to-Golgi vesicle transport. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2013]
Allele List at MGI
Other mutations in this stock
Total: 87 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700008P02Rik A G 3: 6,685,501 (GRCm39) probably benign Het
Aadacl2 C T 3: 59,917,997 (GRCm39) T82I probably benign Het
Acadl T C 1: 66,892,382 (GRCm39) N147S probably benign Het
Actr3 A T 1: 125,336,300 (GRCm39) M79K probably damaging Het
Agbl3 A G 6: 34,834,452 (GRCm39) S874G possibly damaging Het
Aoah A T 13: 21,187,118 (GRCm39) T472S probably damaging Het
Asb16 A T 11: 102,159,821 (GRCm39) D58V probably damaging Het
B4galt1 T C 4: 40,823,575 (GRCm39) D172G probably benign Het
Bax T C 7: 45,114,671 (GRCm39) N55S possibly damaging Het
Bdkrb2 A G 12: 105,558,118 (GRCm39) N120D possibly damaging Het
Bicdl1 T C 5: 115,789,325 (GRCm39) probably benign Het
Cand1 A G 10: 119,049,471 (GRCm39) L425P probably damaging Het
Caskin1 G A 17: 24,724,452 (GRCm39) probably null Het
Cd248 C T 19: 5,119,960 (GRCm39) P603S probably benign Het
Cep95 G T 11: 106,690,930 (GRCm39) R143L probably benign Het
Clptm1l G T 13: 73,762,792 (GRCm39) probably null Het
Cntnap5a T C 1: 115,987,930 (GRCm39) F154L possibly damaging Het
Cyld A T 8: 89,436,618 (GRCm39) I303F possibly damaging Het
Dock2 A G 11: 34,597,288 (GRCm39) S370P probably damaging Het
Enah G T 1: 181,749,858 (GRCm39) T327K probably damaging Het
Farp2 A T 1: 93,507,582 (GRCm39) S427C probably damaging Het
Fbxw11 C T 11: 32,683,612 (GRCm39) T301M probably damaging Het
Foxc2 A T 8: 121,843,915 (GRCm39) T188S probably benign Het
Fzd2 A G 11: 102,497,154 (GRCm39) T533A probably benign Het
Glb1l2 G T 9: 26,680,334 (GRCm39) S248* probably null Het
Glul A T 1: 153,781,284 (GRCm39) probably benign Het
Gm28042 A G 2: 119,871,887 (GRCm39) T946A probably benign Het
Golga3 T A 5: 110,329,649 (GRCm39) D2E probably damaging Het
Grm1 A T 10: 10,595,711 (GRCm39) F639Y probably benign Het
Gzmn A G 14: 56,403,368 (GRCm39) L247P probably benign Het
Hgf T G 5: 16,818,783 (GRCm39) I525R probably damaging Het
Hnrnpul2 T A 19: 8,808,696 (GRCm39) D719E probably benign Het
Itga10 C T 3: 96,559,054 (GRCm39) probably benign Het
Itga9 T C 9: 118,436,185 (GRCm39) probably null Het
Itgb1 T A 8: 129,431,939 (GRCm39) C16S probably damaging Het
Itgb1 G T 8: 129,431,940 (GRCm39) C16F possibly damaging Het
Kat14 A G 2: 144,236,020 (GRCm39) I251V probably benign Het
Kdsr A T 1: 106,662,271 (GRCm39) probably null Het
Kif12 T A 4: 63,084,737 (GRCm39) E527V probably benign Het
Larp1b T C 3: 40,987,909 (GRCm39) S44P probably damaging Het
Lonp2 T C 8: 87,399,700 (GRCm39) probably benign Het
Lrp1 C T 10: 127,441,475 (GRCm39) S216N probably benign Het
Lrrc19 T C 4: 94,529,187 (GRCm39) S32G probably benign Het
Mdm2 G A 10: 117,526,434 (GRCm39) T335M probably benign Het
Mettl25 A G 10: 105,615,493 (GRCm39) Y504H probably damaging Het
Mill1 T C 7: 17,979,572 (GRCm39) I13T probably benign Het
Mmachc T A 4: 116,560,721 (GRCm39) Q258L probably benign Het
Mpdz T A 4: 81,339,413 (GRCm39) I5L probably benign Het
Mrps2 C T 2: 28,359,500 (GRCm39) A119V probably benign Het
Mtcl2 A T 2: 156,869,557 (GRCm39) M1026K probably benign Het
Mtmr11 A G 3: 96,075,429 (GRCm39) T370A probably benign Het
Nmi T C 2: 51,848,989 (GRCm39) I34V possibly damaging Het
Obscn A T 11: 58,926,901 (GRCm39) M5538K possibly damaging Het
Ogdhl T C 14: 32,047,822 (GRCm39) I24T probably benign Het
Omp G T 7: 97,794,566 (GRCm39) D20E probably benign Het
Or2ag19 A G 7: 106,444,403 (GRCm39) Y195C possibly damaging Het
Or52e8b A G 7: 104,673,767 (GRCm39) V140A probably benign Het
Or5b120 C T 19: 13,480,121 (GRCm39) T138M probably benign Het
Or6c69 A G 10: 129,747,550 (GRCm39) V199A probably benign Het
Otog A G 7: 45,933,332 (GRCm39) H1291R probably benign Het
Pgbd1 A G 13: 21,607,462 (GRCm39) L244P probably damaging Het
Ranbp2 A G 10: 58,299,808 (GRCm39) I481V probably benign Het
Rbp3 A T 14: 33,677,749 (GRCm39) I566F probably damaging Het
Rsph4a A G 10: 33,781,525 (GRCm39) D125G probably benign Het
Scn11a A G 9: 119,598,873 (GRCm39) V1219A probably damaging Het
Serpine3 G A 14: 62,911,830 (GRCm39) G264D probably benign Het
Slc4a10 T C 2: 62,087,806 (GRCm39) F400L probably damaging Het
Slco1a4 C T 6: 141,791,173 (GRCm39) V8I probably benign Het
Spen T C 4: 141,215,335 (GRCm39) D499G unknown Het
Stk32c A G 7: 138,698,931 (GRCm39) probably null Het
Tars1 A G 15: 11,388,261 (GRCm39) V485A probably benign Het
Tcerg1l A G 7: 137,963,496 (GRCm39) L258P probably damaging Het
Tmc2 A T 2: 130,089,880 (GRCm39) I622F probably damaging Het
Tmem183a A T 1: 134,282,444 (GRCm39) N220K probably damaging Het
Tnni3 T C 7: 4,523,525 (GRCm39) D146G probably damaging Het
Trappc8 A G 18: 20,996,608 (GRCm39) Y436H probably damaging Het
Ttc41 G A 10: 86,612,254 (GRCm39) V1176I probably benign Het
Ube2b A G 11: 51,888,699 (GRCm39) V24A probably benign Het
Usp30 T C 5: 114,251,022 (GRCm39) C233R probably damaging Het
Vmn1r87 T A 7: 12,865,703 (GRCm39) T195S possibly damaging Het
Vmn2r24 T C 6: 123,783,479 (GRCm39) probably benign Het
Vmn2r81 C A 10: 79,128,858 (GRCm39) T583N probably damaging Het
Vwa8 C T 14: 79,145,670 (GRCm39) R116C probably damaging Het
Wdr1 C A 5: 38,687,315 (GRCm39) V239L probably benign Het
Wdr17 C T 8: 55,156,942 (GRCm39) probably benign Het
Zfhx4 A C 3: 5,306,789 (GRCm39) D5A probably damaging Het
Zfyve27 T C 19: 42,160,184 (GRCm39) probably null Het
Other mutations in Trappc11
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00324:Trappc11 APN 8 47,956,337 (GRCm39) unclassified probably benign
IGL01300:Trappc11 APN 8 47,954,903 (GRCm39) missense probably benign
IGL01312:Trappc11 APN 8 47,958,712 (GRCm39) missense possibly damaging 0.95
IGL01344:Trappc11 APN 8 47,972,739 (GRCm39) missense probably damaging 1.00
IGL01518:Trappc11 APN 8 47,954,904 (GRCm39) splice site probably null
IGL01747:Trappc11 APN 8 47,972,656 (GRCm39) missense probably benign 0.41
IGL01781:Trappc11 APN 8 47,967,163 (GRCm39) missense possibly damaging 0.95
IGL01908:Trappc11 APN 8 47,957,029 (GRCm39) missense probably damaging 1.00
IGL01956:Trappc11 APN 8 47,981,036 (GRCm39) missense possibly damaging 0.86
IGL02266:Trappc11 APN 8 47,958,766 (GRCm39) missense probably damaging 1.00
IGL02377:Trappc11 APN 8 47,983,685 (GRCm39) critical splice donor site probably null
IGL02530:Trappc11 APN 8 47,960,617 (GRCm39) missense probably damaging 1.00
IGL02676:Trappc11 APN 8 47,946,448 (GRCm39) splice site probably benign
IGL03030:Trappc11 APN 8 47,966,964 (GRCm39) missense probably damaging 0.98
IGL03393:Trappc11 APN 8 47,963,912 (GRCm39) missense possibly damaging 0.95
bantu UTSW 8 47,951,701 (GRCm39) missense probably benign 0.44
bunyoro UTSW 8 47,965,320 (GRCm39) splice site probably null
nyoro UTSW 8 47,980,014 (GRCm39) missense possibly damaging 0.73
serval UTSW 8 47,957,000 (GRCm39) missense probably damaging 1.00
R0009:Trappc11 UTSW 8 47,956,355 (GRCm39) missense possibly damaging 0.70
R0009:Trappc11 UTSW 8 47,956,355 (GRCm39) missense possibly damaging 0.70
R0043:Trappc11 UTSW 8 47,958,610 (GRCm39) splice site probably benign
R0180:Trappc11 UTSW 8 47,981,009 (GRCm39) missense possibly damaging 0.86
R0529:Trappc11 UTSW 8 47,980,014 (GRCm39) missense possibly damaging 0.73
R0538:Trappc11 UTSW 8 47,956,447 (GRCm39) missense probably benign 0.01
R0740:Trappc11 UTSW 8 47,977,623 (GRCm39) missense probably damaging 0.99
R1352:Trappc11 UTSW 8 47,978,081 (GRCm39) missense possibly damaging 0.90
R1469:Trappc11 UTSW 8 47,957,000 (GRCm39) missense probably damaging 1.00
R1469:Trappc11 UTSW 8 47,957,000 (GRCm39) missense probably damaging 1.00
R1502:Trappc11 UTSW 8 47,983,862 (GRCm39) missense possibly damaging 0.94
R1741:Trappc11 UTSW 8 47,982,362 (GRCm39) critical splice donor site probably null
R2292:Trappc11 UTSW 8 47,958,771 (GRCm39) missense probably damaging 1.00
R2303:Trappc11 UTSW 8 47,956,451 (GRCm39) missense probably damaging 0.99
R2931:Trappc11 UTSW 8 47,956,977 (GRCm39) missense probably damaging 0.99
R3522:Trappc11 UTSW 8 47,951,708 (GRCm39) missense possibly damaging 0.93
R3714:Trappc11 UTSW 8 47,958,351 (GRCm39) intron probably benign
R3739:Trappc11 UTSW 8 47,967,138 (GRCm39) missense probably damaging 0.98
R4165:Trappc11 UTSW 8 47,978,003 (GRCm39) splice site probably benign
R4581:Trappc11 UTSW 8 47,946,380 (GRCm39) missense probably damaging 0.97
R4598:Trappc11 UTSW 8 47,966,801 (GRCm39) missense probably damaging 0.98
R4939:Trappc11 UTSW 8 47,972,700 (GRCm39) missense probably damaging 1.00
R4990:Trappc11 UTSW 8 47,943,930 (GRCm39) missense probably benign 0.41
R4994:Trappc11 UTSW 8 47,975,476 (GRCm39) nonsense probably null
R5091:Trappc11 UTSW 8 47,965,639 (GRCm39) missense probably benign 0.00
R5123:Trappc11 UTSW 8 47,966,437 (GRCm39) missense probably damaging 0.99
R5176:Trappc11 UTSW 8 47,963,998 (GRCm39) missense possibly damaging 0.79
R5279:Trappc11 UTSW 8 47,958,339 (GRCm39) intron probably benign
R5293:Trappc11 UTSW 8 47,946,377 (GRCm39) missense possibly damaging 0.83
R5294:Trappc11 UTSW 8 47,983,766 (GRCm39) missense possibly damaging 0.88
R5661:Trappc11 UTSW 8 47,965,642 (GRCm39) missense probably damaging 0.99
R5838:Trappc11 UTSW 8 47,965,594 (GRCm39) critical splice donor site probably null
R5889:Trappc11 UTSW 8 47,972,613 (GRCm39) missense probably benign 0.40
R5952:Trappc11 UTSW 8 47,949,952 (GRCm39) critical splice donor site probably null
R5959:Trappc11 UTSW 8 47,954,593 (GRCm39) missense probably damaging 0.97
R6239:Trappc11 UTSW 8 47,982,529 (GRCm39) missense possibly damaging 0.73
R6322:Trappc11 UTSW 8 47,983,808 (GRCm39) missense possibly damaging 0.95
R6369:Trappc11 UTSW 8 47,965,320 (GRCm39) splice site probably null
R7541:Trappc11 UTSW 8 47,958,617 (GRCm39) splice site probably null
R7544:Trappc11 UTSW 8 47,975,449 (GRCm39) missense possibly damaging 0.73
R7762:Trappc11 UTSW 8 47,975,411 (GRCm39) missense probably damaging 0.99
R7964:Trappc11 UTSW 8 47,979,979 (GRCm39) missense possibly damaging 0.54
R8183:Trappc11 UTSW 8 47,982,391 (GRCm39) missense possibly damaging 0.93
R8282:Trappc11 UTSW 8 47,969,624 (GRCm39) missense probably damaging 0.97
R8733:Trappc11 UTSW 8 47,954,883 (GRCm39) missense probably damaging 1.00
R8782:Trappc11 UTSW 8 47,951,701 (GRCm39) missense probably benign 0.44
R8853:Trappc11 UTSW 8 47,982,439 (GRCm39) missense probably damaging 0.98
R9544:Trappc11 UTSW 8 47,972,713 (GRCm39) missense possibly damaging 0.94
R9709:Trappc11 UTSW 8 47,946,348 (GRCm39) missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- TGCACCGCTAACCGACACG -3'
(R):5'- TGCCTTATGCTTTCTTCCAGGATGATAC -3'

Sequencing Primer
(F):5'- GCAGTCATTGATGGAGCAAG -3'
(R):5'- CTTCCAGGATGATACTGTCACAATAG -3'
Posted On 2014-04-24