Mutagenetix > Incidental Mutation

Incidental Mutation 'R0470:Sec13'

177840

Institutional Source

Beutler Lab

Gene Symbol

Sec13

Ensembl Gene

ENSMUSG00000030298

Gene Name

SEC13 homolog, nuclear pore and COPII coat complex component

Synonyms

1110003H02Rik, Sec13l1, Sec13r

MMRRC Submission

038670-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.961) question?

Stock #

R0470 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

113705013-113717642 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

T to C at 113717593 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000098606 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032440] [ENSMUST00000101045]

AlphaFold

Q9D1M0

Predicted Effect

probably benign
Transcript: ENSMUST00000032440

SMART Domains

Protein: ENSMUSP00000032440
Gene: ENSMUSG00000030298

Domain	Start	End	E-Value	Type
WD40	1	41	7.39e-3	SMART
WD40	46	87	5.55e-7	SMART
WD40	92	133	8.75e-5	SMART
WD40	139	195	2.67e-1	SMART
WD40	201	244	6.73e-6	SMART
WD40	254	290	9.75e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000101045

SMART Domains

Protein: ENSMUSP00000098606
Gene: ENSMUSG00000030302

Domain	Start	End	E-Value	Type
Cation_ATPase_N	47	123	1.21e-4	SMART
Pfam:E1-E2_ATPase	156	444	1.7e-56	PFAM
Pfam:Hydrolase	448	787	3.9e-25	PFAM
Pfam:HAD	451	784	2.4e-16	PFAM
Pfam:Hydrolase_like2	497	593	9.4e-17	PFAM
Pfam:Hydrolase_3	745	820	1.7e-6	PFAM
transmembrane domain	833	855	N/A	INTRINSIC
Pfam:Cation_ATPase_C	857	1039	7.3e-46	PFAM
low complexity region	1057	1070	N/A	INTRINSIC
Pfam:ATP_Ca_trans_C	1081	1144	1.4e-31	PFAM
low complexity region	1151	1166	N/A	INTRINSIC
low complexity region	1175	1189	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205135

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.3%
20x: 93.0%

Validation Efficiency

98% (55/56)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the SEC13 family of WD-repeat proteins. It is a constituent of the endoplasmic reticulum and the nuclear pore complex. It has similarity to the yeast SEC13 protein, which is required for vesicle biogenesis from endoplasmic reticulum during the transport of proteins. Multiple alternatively spliced transcript variants have been found. [provided by RefSeq, Oct 2008]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ahnak	T	G	19: 8,986,331 (GRCm39)	D2538E	probably benign	Het
Akr1c13	T	A	13: 4,248,500 (GRCm39)	L235H	probably damaging	Het
Ank	G	A	15: 27,571,721 (GRCm39)	C331Y	probably damaging	Het
Ankrd12	T	C	17: 66,293,129 (GRCm39)	E768G	probably benign	Het
Atm	A	T	9: 53,372,266 (GRCm39)	V2172E	probably damaging	Het
Atp10b	T	A	11: 43,093,866 (GRCm39)	L470Q	possibly damaging	Het
Bcl2	G	A	1: 106,640,292 (GRCm39)	R107C	probably damaging	Het
Ccn4	A	G	15: 66,789,227 (GRCm39)	I238V	probably benign	Het
Cdadc1	A	T	14: 59,811,290 (GRCm39)		probably benign	Het
Cfhr2	A	T	1: 139,749,517 (GRCm39)	V155E	probably damaging	Het
Chp1	C	T	2: 119,391,244 (GRCm39)	R34C	probably damaging	Het
Cilp2	A	T	8: 70,338,055 (GRCm39)	V192E	possibly damaging	Het
Cyth1	T	C	11: 118,023,074 (GRCm39)		probably benign	Het
Dnah8	T	A	17: 30,927,514 (GRCm39)		probably benign	Het
Gja3	T	C	14: 57,273,884 (GRCm39)	T163A	probably damaging	Het
Gsdmcl1	C	T	15: 63,722,280 (GRCm39)		noncoding transcript	Het
Herc6	C	T	6: 57,596,437 (GRCm39)	T459M	probably damaging	Het
Hexb	A	G	13: 97,314,507 (GRCm39)	L412P	probably damaging	Het
Il17ra	T	G	6: 120,458,767 (GRCm39)	D639E	probably benign	Het
Kcnh5	G	A	12: 75,161,188 (GRCm39)	T240I	probably benign	Het
Lef1	T	C	3: 130,906,475 (GRCm39)		probably benign	Het
Lilrb4a	T	A	10: 51,370,923 (GRCm39)	N282K	possibly damaging	Het
Mbnl2	A	T	14: 120,642,062 (GRCm39)	H342L	probably damaging	Het
Minar2	C	T	18: 59,208,711 (GRCm39)	R120C	probably damaging	Het
Nipal3	A	G	4: 135,174,683 (GRCm39)	V356A	probably damaging	Het
Or2a54	C	G	6: 43,093,558 (GRCm39)	A294G	probably null	Het
Or51i1	A	T	7: 103,670,877 (GRCm39)	I216N	probably damaging	Het
Plekha6	G	A	1: 133,200,045 (GRCm39)	R208Q	probably benign	Het
Prkar1b	A	G	5: 139,036,504 (GRCm39)	I82T	probably damaging	Het
Prrc1	C	T	18: 57,496,469 (GRCm39)	T140M	probably damaging	Het
Psg22	A	C	7: 18,453,589 (GRCm39)	S95R	probably damaging	Het
Ptk6	T	C	2: 180,837,732 (GRCm39)	T396A	probably benign	Het
Ptov1	A	G	7: 44,514,235 (GRCm39)	S9P	probably damaging	Het
Scin	A	C	12: 40,123,291 (GRCm39)		probably benign	Het
Setd1a	G	A	7: 127,384,229 (GRCm39)		probably benign	Het
Sf3a2	G	A	10: 80,640,388 (GRCm39)		probably benign	Het
Shmt1	T	C	11: 60,683,789 (GRCm39)	Y341C	possibly damaging	Het
Slc27a4	T	A	2: 29,694,197 (GRCm39)	L7Q	probably benign	Het
Slc41a2	T	C	10: 83,152,086 (GRCm39)	M130V	possibly damaging	Het
Sorcs3	T	C	19: 48,785,956 (GRCm39)		probably null	Het
Tex24	C	T	8: 27,834,936 (GRCm39)	R155*	probably null	Het
Tgfb1	T	A	7: 25,387,355 (GRCm39)		probably benign	Het
Tmc5	A	G	7: 118,239,154 (GRCm39)	D349G	possibly damaging	Het
Trappc13	C	T	13: 104,297,512 (GRCm39)	V131I	possibly damaging	Het
Trim66	A	G	7: 109,056,749 (GRCm39)		probably benign	Het
Tspoap1	T	C	11: 87,666,988 (GRCm39)	S1027P	probably damaging	Het
Usp34	C	T	11: 23,386,001 (GRCm39)	H2143Y	possibly damaging	Het
Vmn1r179	A	C	7: 23,627,818 (GRCm39)	Y3S	probably benign	Het
Vmn1r231	G	A	17: 21,110,265 (GRCm39)	Q217*	probably null	Het
Vmn1r62	T	A	7: 5,679,066 (GRCm39)	L249*	probably null	Het
Vmn1r71	G	C	7: 10,482,019 (GRCm39)	S223C	possibly damaging	Het
Vmn2r109	T	C	17: 20,773,148 (GRCm39)	Q491R	probably benign	Het
Vwf	G	A	6: 125,605,391 (GRCm39)	V925M	possibly damaging	Het
Zbtb6	A	C	2: 37,319,505 (GRCm39)	L141W	probably damaging	Het
Zranb1	G	T	7: 132,584,500 (GRCm39)	L615F	probably damaging	Het

Other mutations in Sec13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02044:Sec13	APN	6	113,713,381 (GRCm39)	missense	probably damaging	1.00
BB005:Sec13	UTSW	6	113,706,601 (GRCm39)	missense	probably damaging	1.00
BB015:Sec13	UTSW	6	113,706,601 (GRCm39)	missense	probably damaging	1.00
R0507:Sec13	UTSW	6	113,712,080 (GRCm39)	missense	probably damaging	1.00
R1269:Sec13	UTSW	6	113,714,956 (GRCm39)	missense	probably damaging	0.98
R4120:Sec13	UTSW	6	113,711,637 (GRCm39)	missense	probably damaging	1.00
R4624:Sec13	UTSW	6	113,706,652 (GRCm39)	missense	probably benign	0.02
R4938:Sec13	UTSW	6	113,712,153 (GRCm39)	missense	probably damaging	1.00
R5156:Sec13	UTSW	6	113,707,837 (GRCm39)	missense	probably benign	0.05
R6065:Sec13	UTSW	6	113,707,793 (GRCm39)	missense	probably benign	0.01
R6302:Sec13	UTSW	6	113,712,167 (GRCm39)	missense	probably damaging	1.00
R7265:Sec13	UTSW	6	113,712,097 (GRCm39)	nonsense	probably null
R7928:Sec13	UTSW	6	113,706,601 (GRCm39)	missense	probably damaging	1.00
R8034:Sec13	UTSW	6	113,712,050 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- CCAATTCTGGAGGACAAGACACGAG -3'
(R):5'- AAATCCCTGGATTAGGGTCGCCAC -3'

Sequencing Primer
(F):5'- CAAGACACGAGACGGGC -3'
(R):5'- TTAGGGTCGCCACAGCAAC -3'

Posted On

2014-04-25