Incidental Mutation 'IGL01874:Vmn2r56'
ID 178799
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn2r56
Ensembl Gene ENSMUSG00000090762
Gene Name vomeronasal 2, receptor 56
Synonyms EG629079
Accession Numbers
Essential gene? Probably non essential (E-score: 0.066) question?
Stock # IGL01874
Quality Score
Status
Chromosome 7
Chromosomal Location 12427787-12468785 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 12449602 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Phenylalanine at position 212 (Y212F)
Ref Sequence ENSEMBL: ENSMUSP00000129566 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000163852]
AlphaFold A0A3B2WBA1
Predicted Effect probably benign
Transcript: ENSMUST00000163852
AA Change: Y212F

PolyPhen 2 Score 0.031 (Sensitivity: 0.95; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000129566
Gene: ENSMUSG00000090762
AA Change: Y212F

DomainStartEndE-ValueType
Pfam:ANF_receptor 5 397 1.9e-55 PFAM
Pfam:NCD3G 439 492 6.4e-20 PFAM
Pfam:7tm_3 523 760 1.3e-53 PFAM
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts16 A T 13: 70,916,823 (GRCm39) V723D possibly damaging Het
Adgrb1 G A 15: 74,413,423 (GRCm39) V536I possibly damaging Het
Aox4 T C 1: 58,291,243 (GRCm39) L787S probably damaging Het
Atp2c1 A C 9: 105,326,024 (GRCm39) V293G probably damaging Het
Ccnb1 T C 13: 100,920,001 (GRCm39) D170G probably damaging Het
Cdc42 T C 4: 137,063,381 (GRCm39) I4V probably benign Het
Clip1 T C 5: 123,741,729 (GRCm39) Q1175R possibly damaging Het
Cox6a1 A G 5: 115,483,904 (GRCm39) *113Q probably null Het
Crtc2 C T 3: 90,165,815 (GRCm39) P139L probably damaging Het
Cyp8b1 A T 9: 121,744,969 (GRCm39) M121K possibly damaging Het
D630003M21Rik C A 2: 158,046,644 (GRCm39) G778C probably damaging Het
Dgat1 A G 15: 76,387,241 (GRCm39) F349L probably damaging Het
Enox1 A G 14: 77,816,602 (GRCm39) Y194C probably damaging Het
Fam120b T A 17: 15,623,301 (GRCm39) C426* probably null Het
Fxyd3 A G 7: 30,770,318 (GRCm39) probably benign Het
Gin1 A G 1: 97,710,797 (GRCm39) Y160C probably damaging Het
Gm10718 A T 9: 3,025,118 (GRCm39) Y194F probably benign Het
Gm11110 T A 17: 57,399,693 (GRCm39) probably benign Het
Gm1818 T C 12: 48,602,973 (GRCm39) noncoding transcript Het
Gucy1a2 T C 9: 3,797,343 (GRCm39) S598P probably damaging Het
Hook3 T A 8: 26,529,760 (GRCm39) N199Y possibly damaging Het
Il10ra A G 9: 45,178,458 (GRCm39) L41P probably damaging Het
Itgam C T 7: 127,714,338 (GRCm39) T949I probably damaging Het
Kctd3 A G 1: 188,729,188 (GRCm39) V123A probably damaging Het
Krt84 G A 15: 101,436,239 (GRCm39) A450V probably damaging Het
Lrrc7 G A 3: 157,946,080 (GRCm39) probably benign Het
Nckap1 A G 2: 80,355,980 (GRCm39) F608L probably damaging Het
Niban2 A T 2: 32,795,779 (GRCm39) probably null Het
Nmbr A T 10: 14,642,696 (GRCm39) Y85F probably benign Het
Nol6 A C 4: 41,115,412 (GRCm39) L1135R probably damaging Het
Ntan1 T C 16: 13,653,077 (GRCm39) F278L probably benign Het
Or2n1e T A 17: 38,586,408 (GRCm39) S249T probably benign Het
Pcsk5 T A 19: 17,573,041 (GRCm39) T474S probably damaging Het
Pex11b T A 3: 96,550,883 (GRCm39) probably null Het
Pkhd1 G T 1: 20,173,459 (GRCm39) A3786E probably benign Het
Prkdc T C 16: 15,552,858 (GRCm39) I2098T possibly damaging Het
Prl2c5 T A 13: 13,365,362 (GRCm39) S169R probably benign Het
Ptbp2 A G 3: 119,541,449 (GRCm39) V196A probably damaging Het
Rad17 T C 13: 100,754,192 (GRCm39) probably benign Het
Skic2 T C 17: 35,060,185 (GRCm39) N114D probably benign Het
Slc47a2 T A 11: 61,203,685 (GRCm39) probably null Het
Srcin1 A T 11: 97,423,924 (GRCm39) M684K possibly damaging Het
Sspo T A 6: 48,429,124 (GRCm39) C298S probably damaging Het
Tenm3 G T 8: 48,689,793 (GRCm39) Y1915* probably null Het
Tnks1bp1 A G 2: 84,888,791 (GRCm39) T373A probably benign Het
Trp63 A C 16: 25,701,335 (GRCm39) N470H possibly damaging Het
Ttn T C 2: 76,628,907 (GRCm39) N12703S probably damaging Het
Ubr4 T C 4: 139,120,600 (GRCm39) probably benign Het
Other mutations in Vmn2r56
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00902:Vmn2r56 APN 7 12,449,426 (GRCm39) missense probably benign 0.38
IGL01060:Vmn2r56 APN 7 12,447,016 (GRCm39) missense probably damaging 0.97
IGL01433:Vmn2r56 APN 7 12,449,541 (GRCm39) missense probably benign
IGL01859:Vmn2r56 APN 7 12,449,932 (GRCm39) missense probably damaging 1.00
IGL02208:Vmn2r56 APN 7 12,449,408 (GRCm39) missense probably benign 0.01
PIT4445001:Vmn2r56 UTSW 7 12,449,153 (GRCm39) critical splice donor site probably null
R0077:Vmn2r56 UTSW 7 12,449,332 (GRCm39) missense probably benign 0.01
R0278:Vmn2r56 UTSW 7 12,449,644 (GRCm39) missense probably damaging 0.99
R0512:Vmn2r56 UTSW 7 12,449,350 (GRCm39) missense probably benign
R0658:Vmn2r56 UTSW 7 12,444,235 (GRCm39) missense probably benign 0.10
R0789:Vmn2r56 UTSW 7 12,466,762 (GRCm39) missense probably damaging 1.00
R1534:Vmn2r56 UTSW 7 12,427,954 (GRCm39) missense probably benign
R1731:Vmn2r56 UTSW 7 12,466,972 (GRCm39) missense probably benign
R1817:Vmn2r56 UTSW 7 12,449,542 (GRCm39) missense probably benign
R2047:Vmn2r56 UTSW 7 12,466,918 (GRCm39) missense probably damaging 1.00
R2139:Vmn2r56 UTSW 7 12,446,890 (GRCm39) nonsense probably null
R2160:Vmn2r56 UTSW 7 12,428,146 (GRCm39) missense probably benign 0.43
R2449:Vmn2r56 UTSW 7 12,428,082 (GRCm39) missense possibly damaging 0.67
R2877:Vmn2r56 UTSW 7 12,444,954 (GRCm39) missense probably benign
R2878:Vmn2r56 UTSW 7 12,444,954 (GRCm39) missense probably benign
R4910:Vmn2r56 UTSW 7 12,449,462 (GRCm39) missense possibly damaging 0.64
R5072:Vmn2r56 UTSW 7 12,427,983 (GRCm39) missense probably benign 0.40
R5340:Vmn2r56 UTSW 7 12,449,799 (GRCm39) missense probably damaging 1.00
R5697:Vmn2r56 UTSW 7 12,449,917 (GRCm39) missense probably damaging 1.00
R5798:Vmn2r56 UTSW 7 12,446,892 (GRCm39) missense probably benign 0.00
R6166:Vmn2r56 UTSW 7 12,427,947 (GRCm39) missense probably damaging 1.00
R6290:Vmn2r56 UTSW 7 12,428,809 (GRCm39) missense probably damaging 1.00
R6458:Vmn2r56 UTSW 7 12,427,984 (GRCm39) missense probably damaging 0.99
R6751:Vmn2r56 UTSW 7 12,428,719 (GRCm39) missense probably benign
R6978:Vmn2r56 UTSW 7 12,449,333 (GRCm39) missense probably benign 0.01
R7090:Vmn2r56 UTSW 7 12,449,254 (GRCm39) missense probably damaging 1.00
R7200:Vmn2r56 UTSW 7 12,444,259 (GRCm39) missense probably damaging 1.00
R7861:Vmn2r56 UTSW 7 12,449,351 (GRCm39) missense probably benign 0.00
R8222:Vmn2r56 UTSW 7 12,444,960 (GRCm39) missense probably benign
R8282:Vmn2r56 UTSW 7 12,449,601 (GRCm39) nonsense probably null
R8786:Vmn2r56 UTSW 7 12,449,393 (GRCm39) missense probably damaging 1.00
R8970:Vmn2r56 UTSW 7 12,428,632 (GRCm39) missense probably damaging 1.00
R9230:Vmn2r56 UTSW 7 12,444,237 (GRCm39) missense possibly damaging 0.70
RF002:Vmn2r56 UTSW 7 12,428,757 (GRCm39) missense probably benign 0.02
Posted On 2014-05-07