Incidental Mutation 'IGL01940:Skil'
ID |
180848 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Skil
|
Ensembl Gene |
ENSMUSG00000027660 |
Gene Name |
SKI-like |
Synonyms |
9130011J04Rik, sno-dE3, SnoN, Skir, SnoN2 |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL01940
|
Quality Score |
|
Status
|
|
Chromosome |
3 |
Chromosomal Location |
31149259-31176741 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 31165793 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Methionine to Lysine
at position 370
(M370K)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000113256
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029194]
[ENSMUST00000117728]
[ENSMUST00000118204]
[ENSMUST00000118470]
|
AlphaFold |
Q60665 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000029194
AA Change: M370K
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000029194 Gene: ENSMUSG00000027660 AA Change: M370K
Domain | Start | End | E-Value | Type |
Pfam:Ski_Sno
|
121 |
233 |
2e-46 |
PFAM |
c-SKI_SMAD_bind
|
258 |
353 |
6.01e-64 |
SMART |
low complexity region
|
419 |
437 |
N/A |
INTRINSIC |
coiled coil region
|
526 |
670 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000117728
AA Change: M290K
PolyPhen 2
Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
|
SMART Domains |
Protein: ENSMUSP00000113054 Gene: ENSMUSG00000027660 AA Change: M290K
Domain | Start | End | E-Value | Type |
Pfam:Ski_Sno
|
41 |
153 |
1.5e-45 |
PFAM |
c-SKI_SMAD_bind
|
178 |
273 |
6.01e-64 |
SMART |
low complexity region
|
347 |
357 |
N/A |
INTRINSIC |
coiled coil region
|
400 |
544 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000118204
AA Change: M370K
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000112413 Gene: ENSMUSG00000027660 AA Change: M370K
Domain | Start | End | E-Value | Type |
Pfam:Ski_Sno
|
125 |
232 |
2.7e-46 |
PFAM |
c-SKI_SMAD_bind
|
258 |
353 |
6.01e-64 |
SMART |
low complexity region
|
419 |
437 |
N/A |
INTRINSIC |
coiled coil region
|
526 |
670 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000118470
AA Change: M370K
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000113256 Gene: ENSMUSG00000027660 AA Change: M370K
Domain | Start | End | E-Value | Type |
Pfam:Ski_Sno
|
121 |
233 |
2e-46 |
PFAM |
c-SKI_SMAD_bind
|
258 |
353 |
6.01e-64 |
SMART |
low complexity region
|
427 |
437 |
N/A |
INTRINSIC |
SCOP:d1eq1a_
|
508 |
625 |
5e-3 |
SMART |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: This gene encodes a member of a small family of proteins that play a key role in the response of cells to extracellular growth signals. The encoded protein regulates members of the transforming growth factor beta signaling pathway. It is highly expressed in certain cancer cells, where it may have both tumor-suppressing and tumor-promoting roles. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2012] PHENOTYPE: Heterozygotes for a null allele develop lymphomas and show increased incidence of chemically-induced tumors while homozygotes die before implantation. Homozygotes for a different null allele are viable but show defective T cell activation and impaired mammary gland alveologenesis and lactogenesis. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 37 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca13 |
T |
C |
11: 9,517,661 (GRCm39) |
|
probably benign |
Het |
Ahnak |
A |
T |
19: 8,983,921 (GRCm39) |
D1735V |
probably benign |
Het |
Alkbh3 |
G |
A |
2: 93,811,940 (GRCm39) |
T231I |
probably damaging |
Het |
Ap4e1 |
T |
C |
2: 126,885,431 (GRCm39) |
V344A |
probably damaging |
Het |
Brip1 |
T |
A |
11: 85,955,792 (GRCm39) |
D907V |
probably benign |
Het |
Clca3a1 |
A |
T |
3: 144,452,737 (GRCm39) |
M582K |
probably benign |
Het |
Csf2 |
G |
T |
11: 54,140,351 (GRCm39) |
P29H |
probably damaging |
Het |
Cyp2d26 |
C |
T |
15: 82,676,758 (GRCm39) |
R196H |
probably benign |
Het |
Dagla |
A |
G |
19: 10,229,535 (GRCm39) |
V575A |
probably benign |
Het |
Dimt1 |
T |
A |
13: 107,085,206 (GRCm39) |
|
probably benign |
Het |
Ei24 |
A |
T |
9: 36,693,687 (GRCm39) |
F288L |
probably damaging |
Het |
Fam107a |
T |
C |
14: 8,298,766 (GRCm38) |
H120R |
probably benign |
Het |
Fancl |
G |
T |
11: 26,409,752 (GRCm39) |
V203F |
probably damaging |
Het |
Fgd6 |
T |
A |
10: 93,925,512 (GRCm39) |
|
probably null |
Het |
Flrt2 |
A |
G |
12: 95,747,012 (GRCm39) |
Y450C |
probably damaging |
Het |
Gm21738 |
G |
A |
14: 19,416,979 (GRCm38) |
S144L |
probably benign |
Het |
Ift122 |
A |
G |
6: 115,864,332 (GRCm39) |
|
probably benign |
Het |
Kcnk13 |
A |
G |
12: 100,027,683 (GRCm39) |
S253G |
probably benign |
Het |
Lcp1 |
A |
T |
14: 75,453,805 (GRCm39) |
N469I |
probably benign |
Het |
Lrrc24 |
T |
C |
15: 76,600,257 (GRCm39) |
Y294C |
probably damaging |
Het |
Odam |
C |
A |
5: 88,035,192 (GRCm39) |
S52Y |
possibly damaging |
Het |
Or14j7 |
C |
T |
17: 38,235,177 (GRCm39) |
T240I |
probably damaging |
Het |
Or4a71 |
T |
A |
2: 89,358,154 (GRCm39) |
N200I |
probably damaging |
Het |
Or51i2 |
A |
G |
7: 103,689,129 (GRCm39) |
N42S |
probably damaging |
Het |
Pkd1 |
G |
T |
17: 24,798,720 (GRCm39) |
R2676L |
possibly damaging |
Het |
Plec |
T |
C |
15: 76,064,529 (GRCm39) |
D1915G |
probably damaging |
Het |
Ptbp2 |
A |
G |
3: 119,519,764 (GRCm39) |
V9A |
possibly damaging |
Het |
Ptk2b |
A |
G |
14: 66,396,062 (GRCm39) |
I802T |
probably benign |
Het |
Rabgap1 |
G |
T |
2: 37,377,079 (GRCm39) |
A304S |
probably damaging |
Het |
Sema3f |
T |
C |
9: 107,560,896 (GRCm39) |
|
probably benign |
Het |
Serpinb3a |
A |
T |
1: 106,973,915 (GRCm39) |
V332E |
probably damaging |
Het |
Slc25a1 |
T |
A |
16: 17,744,304 (GRCm39) |
Y209F |
probably benign |
Het |
Smim15 |
A |
G |
13: 108,184,164 (GRCm39) |
K57E |
probably damaging |
Het |
Taar3 |
T |
A |
10: 23,825,855 (GRCm39) |
C134S |
probably damaging |
Het |
Tns4 |
C |
T |
11: 98,959,047 (GRCm39) |
S684N |
probably benign |
Het |
Vmn2r58 |
A |
G |
7: 41,487,071 (GRCm39) |
V608A |
probably benign |
Het |
Zbtb26 |
A |
T |
2: 37,325,987 (GRCm39) |
C350S |
possibly damaging |
Het |
|
Other mutations in Skil |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02149:Skil
|
APN |
3 |
31,151,856 (GRCm39) |
missense |
possibly damaging |
0.47 |
IGL02388:Skil
|
APN |
3 |
31,165,787 (GRCm39) |
nonsense |
probably null |
|
IGL02478:Skil
|
APN |
3 |
31,151,968 (GRCm39) |
nonsense |
probably null |
|
IGL02723:Skil
|
APN |
3 |
31,171,673 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4243001:Skil
|
UTSW |
3 |
31,167,714 (GRCm39) |
missense |
probably damaging |
0.98 |
PIT4466001:Skil
|
UTSW |
3 |
31,152,381 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4472001:Skil
|
UTSW |
3 |
31,152,381 (GRCm39) |
missense |
probably damaging |
1.00 |
R1809:Skil
|
UTSW |
3 |
31,171,655 (GRCm39) |
missense |
probably damaging |
0.99 |
R3124:Skil
|
UTSW |
3 |
31,151,487 (GRCm39) |
missense |
probably benign |
0.03 |
R3750:Skil
|
UTSW |
3 |
31,170,983 (GRCm39) |
missense |
probably benign |
0.00 |
R4865:Skil
|
UTSW |
3 |
31,167,562 (GRCm39) |
missense |
probably damaging |
1.00 |
R5213:Skil
|
UTSW |
3 |
31,171,600 (GRCm39) |
missense |
probably damaging |
0.99 |
R5328:Skil
|
UTSW |
3 |
31,171,718 (GRCm39) |
missense |
probably benign |
0.00 |
R5357:Skil
|
UTSW |
3 |
31,167,700 (GRCm39) |
missense |
probably benign |
|
R5428:Skil
|
UTSW |
3 |
31,151,647 (GRCm39) |
missense |
probably benign |
|
R6153:Skil
|
UTSW |
3 |
31,152,002 (GRCm39) |
missense |
probably damaging |
1.00 |
R6613:Skil
|
UTSW |
3 |
31,152,029 (GRCm39) |
missense |
probably null |
1.00 |
R7270:Skil
|
UTSW |
3 |
31,151,324 (GRCm39) |
intron |
probably benign |
|
R7999:Skil
|
UTSW |
3 |
31,151,751 (GRCm39) |
missense |
possibly damaging |
0.90 |
R8350:Skil
|
UTSW |
3 |
31,151,603 (GRCm39) |
missense |
probably benign |
0.13 |
R8758:Skil
|
UTSW |
3 |
31,172,686 (GRCm39) |
missense |
probably damaging |
1.00 |
R8802:Skil
|
UTSW |
3 |
31,167,592 (GRCm39) |
missense |
probably damaging |
1.00 |
R8873:Skil
|
UTSW |
3 |
31,152,075 (GRCm39) |
missense |
probably damaging |
1.00 |
R8961:Skil
|
UTSW |
3 |
31,167,729 (GRCm39) |
missense |
probably benign |
0.02 |
R9526:Skil
|
UTSW |
3 |
31,171,639 (GRCm39) |
missense |
probably benign |
0.09 |
R9712:Skil
|
UTSW |
3 |
31,171,009 (GRCm39) |
missense |
probably benign |
|
R9755:Skil
|
UTSW |
3 |
31,151,544 (GRCm39) |
missense |
probably benign |
|
Z1176:Skil
|
UTSW |
3 |
31,151,675 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
Posted On |
2014-05-07 |