Incidental Mutation 'IGL01985:Slc6a11'
| ID |
181877 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Slc6a11
|
| Ensembl Gene |
ENSMUSG00000030307 |
| Gene Name |
solute carrier family 6 (neurotransmitter transporter, GABA), member 11 |
| Synonyms |
GAT4, Gabt4, E130202I16Rik, Gat3, D930045G19Rik |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL01985
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
6 |
| Chromosomal Location |
114108202-114226847 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 114111853 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Aspartic acid
at position 140
(V140D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000032451
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032451]
|
| AlphaFold |
P31650 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000032451
AA Change: V140D
PolyPhen 2
Score 0.428 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000032451
Gene: ENSMUSG00000030307
AA Change: V140D
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
25 |
33 |
N/A |
INTRINSIC |
|
Pfam:SNF
|
45 |
571 |
4.1e-250 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000203105
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a sodium-dependent transporter that uptakes gamma-aminobutyric acid (GABA), an inhibitory neurotransmitter, which ends the GABA neurotransmission. Defects in this gene may result in epilepsy, behavioral problems, or intellectual problems. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]
PHENOTYPE: Mice homozygous for a targeted mutation display postnatal lethality. Mice heterozygous for a targeted mutation display resistance to pharmacologically induced seizures. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| AAdacl4fm3 |
G |
A |
4: 144,442,024 (GRCm39) |
Q76* |
probably null |
Het |
| Cass4 |
A |
C |
2: 172,269,126 (GRCm39) |
S403R |
probably damaging |
Het |
| Ccdc175 |
A |
T |
12: 72,175,052 (GRCm39) |
Y540* |
probably null |
Het |
| Cep164 |
C |
T |
9: 45,690,904 (GRCm39) |
E1266K |
probably damaging |
Het |
| Clec12b |
T |
A |
6: 129,359,334 (GRCm39) |
|
probably benign |
Het |
| Col6a5 |
T |
C |
9: 105,814,482 (GRCm39) |
K510R |
unknown |
Het |
| Crisp4 |
G |
A |
1: 18,204,289 (GRCm39) |
P101S |
probably damaging |
Het |
| Dapk1 |
T |
C |
13: 60,884,074 (GRCm39) |
L614P |
probably damaging |
Het |
| Dip2c |
T |
C |
13: 9,603,303 (GRCm39) |
|
probably benign |
Het |
| Dock7 |
A |
G |
4: 98,911,614 (GRCm39) |
F589L |
probably benign |
Het |
| Dvl2 |
T |
A |
11: 69,899,119 (GRCm39) |
V459E |
probably damaging |
Het |
| E2f6 |
T |
C |
12: 16,869,064 (GRCm39) |
|
probably null |
Het |
| Exph5 |
T |
C |
9: 53,287,869 (GRCm39) |
L1650P |
probably damaging |
Het |
| Farp2 |
A |
G |
1: 93,535,324 (GRCm39) |
Y691C |
probably damaging |
Het |
| Fshb |
T |
C |
2: 106,889,173 (GRCm39) |
T44A |
probably benign |
Het |
| Gm28044 |
T |
A |
13: 67,495,958 (GRCm39) |
K28* |
probably null |
Het |
| Il12b |
G |
A |
11: 44,298,881 (GRCm39) |
W112* |
probably null |
Het |
| Ino80 |
T |
C |
2: 119,263,802 (GRCm39) |
T621A |
probably damaging |
Het |
| Irx5 |
T |
A |
8: 93,086,155 (GRCm39) |
|
probably benign |
Het |
| Jmy |
T |
C |
13: 93,596,144 (GRCm39) |
H495R |
possibly damaging |
Het |
| Kif21a |
A |
T |
15: 90,875,970 (GRCm39) |
V321D |
probably damaging |
Het |
| Lrrc10 |
T |
A |
10: 116,881,921 (GRCm39) |
D198E |
probably damaging |
Het |
| Lrsam1 |
T |
C |
2: 32,818,103 (GRCm39) |
E651G |
probably benign |
Het |
| Mtarc1 |
A |
G |
1: 184,519,931 (GRCm39) |
V230A |
probably damaging |
Het |
| Mylk4 |
T |
A |
13: 32,901,564 (GRCm39) |
I475L |
possibly damaging |
Het |
| Myom3 |
G |
A |
4: 135,493,013 (GRCm39) |
|
probably null |
Het |
| Or5ac19 |
A |
T |
16: 59,089,442 (GRCm39) |
V196E |
probably benign |
Het |
| Pah |
G |
A |
10: 87,414,844 (GRCm39) |
V399M |
probably damaging |
Het |
| Pik3r4 |
G |
A |
9: 105,540,244 (GRCm39) |
E711K |
probably benign |
Het |
| Rbbp6 |
A |
G |
7: 122,570,296 (GRCm39) |
K38E |
probably damaging |
Het |
| Ror1 |
G |
A |
4: 100,283,161 (GRCm39) |
V409M |
possibly damaging |
Het |
| Srebf2 |
G |
T |
15: 82,076,560 (GRCm39) |
A737S |
probably benign |
Het |
| Tcerg1 |
A |
G |
18: 42,663,721 (GRCm39) |
T303A |
unknown |
Het |
| Tmem74 |
A |
T |
15: 43,730,476 (GRCm39) |
I189N |
probably damaging |
Het |
| Tnr |
A |
G |
1: 159,746,607 (GRCm39) |
D1242G |
possibly damaging |
Het |
| U2surp |
A |
T |
9: 95,372,279 (GRCm39) |
F293L |
probably damaging |
Het |
| Uchl5 |
G |
A |
1: 143,661,864 (GRCm39) |
|
probably benign |
Het |
| Usp34 |
T |
A |
11: 23,402,565 (GRCm39) |
C2472S |
probably damaging |
Het |
| Usp42 |
G |
A |
5: 143,700,940 (GRCm39) |
R1028W |
probably damaging |
Het |
| Vmn2r10 |
A |
G |
5: 109,154,125 (GRCm39) |
S60P |
probably benign |
Het |
| Vmn2r31 |
G |
T |
7: 7,397,510 (GRCm39) |
D249E |
probably benign |
Het |
| Vnn1 |
C |
T |
10: 23,776,642 (GRCm39) |
T331I |
probably benign |
Het |
| Zmym6 |
G |
T |
4: 126,994,541 (GRCm39) |
V232F |
probably damaging |
Het |
|
| Other mutations in Slc6a11 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01303:Slc6a11
|
APN |
6 |
114,111,626 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01306:Slc6a11
|
APN |
6 |
114,111,626 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01308:Slc6a11
|
APN |
6 |
114,111,626 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01616:Slc6a11
|
APN |
6 |
114,111,829 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
IGL02270:Slc6a11
|
APN |
6 |
114,215,357 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02692:Slc6a11
|
APN |
6 |
114,139,100 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02828:Slc6a11
|
APN |
6 |
114,111,948 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
IGL03135:Slc6a11
|
APN |
6 |
114,171,570 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
ANU23:Slc6a11
|
UTSW |
6 |
114,111,626 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0603:Slc6a11
|
UTSW |
6 |
114,221,851 (GRCm39) |
missense |
probably benign |
0.03 |
|
R1147:Slc6a11
|
UTSW |
6 |
114,221,831 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R1147:Slc6a11
|
UTSW |
6 |
114,221,831 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R1219:Slc6a11
|
UTSW |
6 |
114,202,772 (GRCm39) |
splice site |
probably benign |
|
|
R1226:Slc6a11
|
UTSW |
6 |
114,171,624 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1676:Slc6a11
|
UTSW |
6 |
114,224,627 (GRCm39) |
missense |
probably benign |
|
|
R2231:Slc6a11
|
UTSW |
6 |
114,171,590 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2297:Slc6a11
|
UTSW |
6 |
114,108,386 (GRCm39) |
missense |
probably benign |
0.37 |
|
R4384:Slc6a11
|
UTSW |
6 |
114,224,688 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R4556:Slc6a11
|
UTSW |
6 |
114,221,773 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4564:Slc6a11
|
UTSW |
6 |
114,108,323 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5488:Slc6a11
|
UTSW |
6 |
114,220,855 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5736:Slc6a11
|
UTSW |
6 |
114,139,123 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6021:Slc6a11
|
UTSW |
6 |
114,207,012 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6150:Slc6a11
|
UTSW |
6 |
114,222,579 (GRCm39) |
missense |
probably benign |
0.08 |
|
R6733:Slc6a11
|
UTSW |
6 |
114,111,859 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7391:Slc6a11
|
UTSW |
6 |
114,215,422 (GRCm39) |
missense |
probably benign |
|
|
R7451:Slc6a11
|
UTSW |
6 |
114,222,644 (GRCm39) |
nonsense |
probably null |
|
|
R7750:Slc6a11
|
UTSW |
6 |
114,207,098 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R8115:Slc6a11
|
UTSW |
6 |
114,108,442 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8179:Slc6a11
|
UTSW |
6 |
114,222,567 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8411:Slc6a11
|
UTSW |
6 |
114,108,398 (GRCm39) |
missense |
probably benign |
0.18 |
|
R8512:Slc6a11
|
UTSW |
6 |
114,215,402 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8774:Slc6a11
|
UTSW |
6 |
114,206,995 (GRCm39) |
splice site |
probably benign |
|
|
R8963:Slc6a11
|
UTSW |
6 |
114,202,782 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R9032:Slc6a11
|
UTSW |
6 |
114,202,808 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9056:Slc6a11
|
UTSW |
6 |
114,220,905 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9085:Slc6a11
|
UTSW |
6 |
114,202,808 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9407:Slc6a11
|
UTSW |
6 |
114,220,914 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Slc6a11
|
UTSW |
6 |
114,224,603 (GRCm39) |
missense |
probably damaging |
0.96 |
|
| Posted On |
2014-05-07 |
Incidental Mutation