Incidental Mutation 'IGL01980:Mmp9'
| ID |
182701 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Mmp9
|
| Ensembl Gene |
ENSMUSG00000017737 |
| Gene Name |
matrix metallopeptidase 9 |
| Synonyms |
MMP-9, Clg4b, Gel B, Gelatinase B, gelatinase B, B/MMP9 |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL01980
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
2 |
| Chromosomal Location |
164782700-164797770 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 164792836 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Arginine
at position 363
(S363R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000017881
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000017881]
[ENSMUST00000137626]
|
| AlphaFold |
P41245 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000017881
AA Change: S363R
PolyPhen 2
Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
|
| SMART Domains |
Protein: ENSMUSP00000017881
Gene: ENSMUSG00000017737
AA Change: S363R
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
|
Pfam:PG_binding_1
|
39 |
95 |
2.9e-8 |
PFAM |
|
ZnMc
|
112 |
445 |
3.92e-39 |
SMART |
|
FN2
|
223 |
271 |
8.08e-29 |
SMART |
|
FN2
|
281 |
329 |
6.93e-28 |
SMART |
|
FN2
|
340 |
388 |
9.28e-29 |
SMART |
|
low complexity region
|
449 |
468 |
N/A |
INTRINSIC |
|
Pfam:PT
|
474 |
508 |
1.1e-11 |
PFAM |
|
HX
|
539 |
583 |
2.4e-8 |
SMART |
|
HX
|
585 |
626 |
9.33e-6 |
SMART |
|
HX
|
631 |
677 |
2.74e-3 |
SMART |
|
HX
|
679 |
721 |
1.74e-1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000134382
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000137626
|
| SMART Domains |
Protein: ENSMUSP00000120628
Gene: ENSMUSG00000017737
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
|
PDB:1L6J|A
|
20 |
67 |
5e-15 |
PDB |
|
SCOP:d1l6ja1
|
29 |
67 |
2e-7 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144917
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a member of the matrix metalloproteinase family of extracellular matrix-degrading enzymes that are involved in tissue remodeling, wound repair, progression of atherosclerosis and tumor invasion. The encoded preproprotein undergoes proteolytic processing to generate a mature, zinc-dependent endopeptidase enzyme that degrades collagens of type IV, V and XI, and elastin. Mice lacking the encoded protein exhibit an abnormal pattern of skeletal growth plate vascularization and ossification, reduced keratinocyte hyperproliferation at all neoplastic stages, a decreased incidence of invasive tumors, and resistance to experimental autoimmune encephalomyelitis. [provided by RefSeq, Feb 2016]
PHENOTYPE: Null mutants have short long bones with compensatory growth via delayed ossification and apoptosis of hypertrophic chondroctyes. Mutants are protected against ischemic brain injury, damage caused by myocardial infarction, and allergic airway inflammation. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Ankrd60 |
C |
T |
2: 173,412,996 (GRCm39) |
C164Y |
probably benign |
Het |
| Atp13a2 |
C |
T |
4: 140,733,463 (GRCm39) |
A979V |
probably benign |
Het |
| Col5a2 |
C |
T |
1: 45,421,393 (GRCm39) |
|
probably benign |
Het |
| Col6a6 |
T |
C |
9: 105,658,184 (GRCm39) |
N676S |
probably damaging |
Het |
| Cpa1 |
T |
C |
6: 30,641,581 (GRCm39) |
F192L |
possibly damaging |
Het |
| Entpd6 |
T |
A |
2: 150,604,286 (GRCm39) |
|
probably null |
Het |
| Fam185a |
A |
G |
5: 21,664,171 (GRCm39) |
K302E |
probably damaging |
Het |
| Il12rb2 |
T |
C |
6: 67,337,519 (GRCm39) |
K121E |
probably benign |
Het |
| Impg2 |
G |
A |
16: 56,041,890 (GRCm39) |
C178Y |
probably damaging |
Het |
| Kdm3b |
G |
T |
18: 34,967,289 (GRCm39) |
C1698F |
probably damaging |
Het |
| Llgl2 |
A |
G |
11: 115,740,851 (GRCm39) |
D451G |
probably damaging |
Het |
| Mgat4b |
T |
A |
11: 50,121,540 (GRCm39) |
L52Q |
probably damaging |
Het |
| Mtfmt |
A |
G |
9: 65,344,356 (GRCm39) |
Y94C |
probably benign |
Het |
| Myo7b |
G |
A |
18: 32,094,953 (GRCm39) |
L1881F |
possibly damaging |
Het |
| Or51a10 |
A |
T |
7: 103,699,300 (GRCm39) |
M87K |
probably benign |
Het |
| Or6c6 |
G |
T |
10: 129,187,386 (GRCm39) |
|
probably benign |
Het |
| Pex5 |
T |
C |
6: 124,375,339 (GRCm39) |
N524S |
probably damaging |
Het |
| Plppr1 |
A |
T |
4: 49,319,992 (GRCm39) |
Y206F |
possibly damaging |
Het |
| Polr3e |
A |
G |
7: 120,539,519 (GRCm39) |
|
probably benign |
Het |
| Rhbdd1 |
A |
G |
1: 82,318,555 (GRCm39) |
|
probably benign |
Het |
| Rims4 |
A |
T |
2: 163,707,702 (GRCm39) |
|
probably benign |
Het |
| Smarcal1 |
A |
T |
1: 72,655,679 (GRCm39) |
K653* |
probably null |
Het |
| Stt3b |
C |
T |
9: 115,105,767 (GRCm39) |
|
probably null |
Het |
| Syt8 |
C |
A |
7: 141,993,877 (GRCm39) |
L343M |
probably damaging |
Het |
| Tbc1d23 |
G |
A |
16: 57,009,615 (GRCm39) |
|
probably benign |
Het |
| Tfec |
T |
C |
6: 16,845,465 (GRCm39) |
I65V |
probably damaging |
Het |
| Tmem236 |
A |
T |
2: 14,223,716 (GRCm39) |
Q168H |
probably benign |
Het |
| Tmem25 |
G |
A |
9: 44,709,568 (GRCm39) |
R78* |
probably null |
Het |
| Tnip2 |
A |
G |
5: 34,654,212 (GRCm39) |
V288A |
probably benign |
Het |
| Ttc1 |
G |
A |
11: 43,621,291 (GRCm39) |
|
probably benign |
Het |
| Tubb4b-ps1 |
A |
C |
5: 7,229,843 (GRCm39) |
|
probably benign |
Het |
| Tut1 |
T |
C |
19: 8,931,364 (GRCm39) |
C21R |
probably damaging |
Het |
| Ubr4 |
C |
A |
4: 139,156,913 (GRCm39) |
Q2313K |
probably damaging |
Het |
| Unc5b |
T |
C |
10: 60,615,966 (GRCm39) |
E119G |
probably damaging |
Het |
| Vmn1r23 |
T |
A |
6: 57,903,475 (GRCm39) |
Q101L |
probably damaging |
Het |
| Vmn2r77 |
A |
G |
7: 86,450,678 (GRCm39) |
D188G |
probably benign |
Het |
| Vmn2r79 |
A |
G |
7: 86,686,290 (GRCm39) |
E557G |
possibly damaging |
Het |
| Zfp738 |
A |
G |
13: 67,818,096 (GRCm39) |
F632L |
possibly damaging |
Het |
|
| Other mutations in Mmp9 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01707:Mmp9
|
APN |
2 |
164,791,909 (GRCm39) |
missense |
probably benign |
0.13 |
|
IGL02117:Mmp9
|
APN |
2 |
164,791,644 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02515:Mmp9
|
APN |
2 |
164,790,876 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02756:Mmp9
|
APN |
2 |
164,791,235 (GRCm39) |
missense |
probably benign |
0.27 |
|
IGL02833:Mmp9
|
APN |
2 |
164,791,723 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02893:Mmp9
|
APN |
2 |
164,790,988 (GRCm39) |
splice site |
probably null |
|
|
IGL02949:Mmp9
|
APN |
2 |
164,793,039 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03097:Mmp9
|
UTSW |
2 |
164,792,726 (GRCm39) |
splice site |
probably null |
|
|
R0001:Mmp9
|
UTSW |
2 |
164,790,303 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0125:Mmp9
|
UTSW |
2 |
164,793,177 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0532:Mmp9
|
UTSW |
2 |
164,791,740 (GRCm39) |
nonsense |
probably null |
|
|
R1300:Mmp9
|
UTSW |
2 |
164,790,876 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1341:Mmp9
|
UTSW |
2 |
164,791,247 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1366:Mmp9
|
UTSW |
2 |
164,795,262 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1711:Mmp9
|
UTSW |
2 |
164,791,342 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2138:Mmp9
|
UTSW |
2 |
164,794,387 (GRCm39) |
nonsense |
probably null |
|
|
R3405:Mmp9
|
UTSW |
2 |
164,791,310 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3406:Mmp9
|
UTSW |
2 |
164,791,310 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4460:Mmp9
|
UTSW |
2 |
164,790,958 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4655:Mmp9
|
UTSW |
2 |
164,793,122 (GRCm39) |
missense |
probably benign |
0.29 |
|
R5155:Mmp9
|
UTSW |
2 |
164,790,986 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5309:Mmp9
|
UTSW |
2 |
164,792,715 (GRCm39) |
unclassified |
probably benign |
|
|
R5355:Mmp9
|
UTSW |
2 |
164,792,912 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R5476:Mmp9
|
UTSW |
2 |
164,794,414 (GRCm39) |
missense |
probably benign |
|
|
R5505:Mmp9
|
UTSW |
2 |
164,795,528 (GRCm39) |
missense |
probably benign |
0.34 |
|
R5646:Mmp9
|
UTSW |
2 |
164,790,970 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5725:Mmp9
|
UTSW |
2 |
164,791,256 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6968:Mmp9
|
UTSW |
2 |
164,794,860 (GRCm39) |
missense |
probably benign |
|
|
R7082:Mmp9
|
UTSW |
2 |
164,790,812 (GRCm39) |
missense |
probably benign |
0.25 |
|
R7822:Mmp9
|
UTSW |
2 |
164,790,956 (GRCm39) |
nonsense |
probably null |
|
|
R8181:Mmp9
|
UTSW |
2 |
164,792,365 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8298:Mmp9
|
UTSW |
2 |
164,792,279 (GRCm39) |
missense |
probably null |
1.00 |
|
R8500:Mmp9
|
UTSW |
2 |
164,795,486 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R8911:Mmp9
|
UTSW |
2 |
164,794,568 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R9111:Mmp9
|
UTSW |
2 |
164,792,726 (GRCm39) |
splice site |
probably null |
|
|
R9289:Mmp9
|
UTSW |
2 |
164,796,800 (GRCm39) |
missense |
probably benign |
0.37 |
|
R9489:Mmp9
|
UTSW |
2 |
164,793,146 (GRCm39) |
missense |
probably benign |
0.09 |
|
R9582:Mmp9
|
UTSW |
2 |
164,791,235 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9590:Mmp9
|
UTSW |
2 |
164,790,834 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9707:Mmp9
|
UTSW |
2 |
164,794,605 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
X0020:Mmp9
|
UTSW |
2 |
164,792,293 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2014-05-07 |
Incidental Mutation