Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02069:Elp1'

185732

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Elp1

Ensembl Gene

ENSMUSG00000028431

Gene Name

elongator complex protein 1

Synonyms

Ikbkap, C78473, 3110040G09Rik, IKAP

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL02069

Quality Score

Status

Chromosome

Chromosomal Location

56749680-56802331 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 56779731 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Aspartic acid at position 560 (G560D)

Ref Sequence

ENSEMBL: ENSMUSP00000030140 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030140]

AlphaFold

Q7TT37

Predicted Effect

probably benign
Transcript: ENSMUST00000030140
AA Change: G560D

PolyPhen 2 Score 0.311 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000030140
Gene: ENSMUSG00000028431
AA Change: G560D

Domain	Start	End	E-Value	Type
Pfam:IKI3	1	955	N/A	PFAM
low complexity region	1186	1205	N/A	INTRINSIC
low complexity region	1210	1225	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126441

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a scaffold protein and a regulator for three different kinases involved in proinflammatory signaling. The encoded protein can bind NF-kappa-B-inducing kinase and I-kappa-B kinases through separate domains and assemble them into an active kinase complex. Mutations in this gene have been associated with familial dysautonomia. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]
PHENOTYPE: Mice homozygous for a null allele exhibit embryonic lethality with arrested neural and vascular development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 40 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acan	G	A	7: 78,742,500 (GRCm39)	V569M	possibly damaging	Het
Alms1	T	C	6: 85,605,805 (GRCm39)	V2016A	probably benign	Het
Apcdd1	T	A	18: 63,083,054 (GRCm39)	W295R	probably damaging	Het
Arid5b	T	A	10: 67,933,229 (GRCm39)	D648V	probably damaging	Het
C2cd6	A	G	1: 59,091,700 (GRCm39)		probably benign	Het
Cst12	A	T	2: 148,634,368 (GRCm39)	D101V	probably damaging	Het
Cyp46a1	T	A	12: 108,312,394 (GRCm39)	Y135N	probably benign	Het
D630045J12Rik	T	C	6: 38,161,007 (GRCm39)	S1046G	probably damaging	Het
Dhtkd1	A	T	2: 5,935,745 (GRCm39)	Y122*	probably null	Het
Disp2	T	A	2: 118,621,161 (GRCm39)	I631N	possibly damaging	Het
Dna2	A	G	10: 62,794,773 (GRCm39)	I387V	probably benign	Het
Dnah7a	A	T	1: 53,601,053 (GRCm39)		probably benign	Het
Eif2ak3	T	C	6: 70,873,949 (GRCm39)	F954S	probably damaging	Het
Fancm	C	A	12: 65,122,685 (GRCm39)	A69D	probably benign	Het
Fbxo34	T	A	14: 47,767,070 (GRCm39)	D143E	probably damaging	Het
Fchsd1	G	A	18: 38,100,667 (GRCm39)	R144*	probably null	Het
Fip1l1	A	G	5: 74,752,534 (GRCm39)	D402G	probably damaging	Het
Frem1	A	G	4: 82,821,788 (GRCm39)	S2107P	probably damaging	Het
Gm1527	A	G	3: 28,980,763 (GRCm39)	N621S	possibly damaging	Het
Hddc2	G	A	10: 31,192,314 (GRCm39)	D54N	probably damaging	Het
Ighm	T	A	12: 113,384,768 (GRCm39)		probably benign	Het
Il17d	G	T	14: 57,779,972 (GRCm39)	E165*	probably null	Het
Kmt5b	A	T	19: 3,857,335 (GRCm39)	K364M	probably damaging	Het
Ldb1	C	A	19: 46,021,617 (GRCm39)	W390L	possibly damaging	Het
Lgmn	T	C	12: 102,370,558 (GRCm39)	E124G	possibly damaging	Het
Mroh2b	A	G	15: 4,933,806 (GRCm39)		probably benign	Het
Pga5	C	T	19: 10,646,763 (GRCm39)	G323S	possibly damaging	Het
Pkd1l3	A	T	8: 110,362,012 (GRCm39)	N1018I	probably damaging	Het
Polr2b	A	G	5: 77,491,044 (GRCm39)	T962A	probably benign	Het
Ptger1	A	G	8: 84,396,086 (GRCm39)	E381G	probably benign	Het
Sec24a	A	T	11: 51,624,761 (GRCm39)		probably benign	Het
Serpine2	T	A	1: 79,799,129 (GRCm39)	I42F	possibly damaging	Het
Sh3tc1	C	T	5: 35,876,339 (GRCm39)	R122Q	probably benign	Het
Slc15a2	T	C	16: 36,579,613 (GRCm39)	I347V	probably benign	Het
Snx4	T	C	16: 33,084,725 (GRCm39)	Y80H	probably damaging	Het
Spata16	C	A	3: 26,786,944 (GRCm39)	C207*	probably null	Het
Syne2	A	G	12: 75,974,186 (GRCm39)	Q1128R	probably benign	Het
Tamalin	A	G	15: 101,122,346 (GRCm39)	Y55C	probably damaging	Het
Trpm4	T	A	7: 44,968,718 (GRCm39)	N405I	probably damaging	Het
Upp2	A	G	2: 58,661,429 (GRCm39)		probably benign	Het

Other mutations in Elp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01060:Elp1	APN	4	56,784,537 (GRCm39)	critical splice donor site	probably null
IGL01521:Elp1	APN	4	56,771,059 (GRCm39)	missense	probably benign	0.27
IGL02162:Elp1	APN	4	56,796,502 (GRCm39)	critical splice donor site	probably null
IGL02252:Elp1	APN	4	56,759,813 (GRCm39)	missense	probably benign	0.09
IGL02726:Elp1	APN	4	56,767,878 (GRCm39)	critical splice acceptor site	probably null
IGL02822:Elp1	APN	4	56,774,520 (GRCm39)	critical splice donor site	probably null
IGL03024:Elp1	APN	4	56,774,686 (GRCm39)	critical splice donor site	probably null
IGL03126:Elp1	APN	4	56,779,717 (GRCm39)	missense	probably benign
R0211:Elp1	UTSW	4	56,795,545 (GRCm39)	missense	probably damaging	1.00
R0239:Elp1	UTSW	4	56,784,596 (GRCm39)	missense	probably benign	0.00
R0239:Elp1	UTSW	4	56,784,596 (GRCm39)	missense	probably benign	0.00
R0603:Elp1	UTSW	4	56,792,105 (GRCm39)	missense	possibly damaging	0.94
R1109:Elp1	UTSW	4	56,786,723 (GRCm39)	missense	probably benign	0.00
R1314:Elp1	UTSW	4	56,786,647 (GRCm39)	missense	probably benign	0.00
R1333:Elp1	UTSW	4	56,770,969 (GRCm39)	splice site	probably benign
R1434:Elp1	UTSW	4	56,781,193 (GRCm39)	missense	probably benign	0.02
R1547:Elp1	UTSW	4	56,798,810 (GRCm39)	missense	probably damaging	1.00
R1547:Elp1	UTSW	4	56,792,090 (GRCm39)	missense	probably damaging	1.00
R1587:Elp1	UTSW	4	56,786,666 (GRCm39)	nonsense	probably null
R1601:Elp1	UTSW	4	56,774,756 (GRCm39)	nonsense	probably null
R2076:Elp1	UTSW	4	56,786,620 (GRCm39)	missense	probably damaging	0.98
R2153:Elp1	UTSW	4	56,779,636 (GRCm39)	splice site	probably null
R2263:Elp1	UTSW	4	56,755,298 (GRCm39)	splice site	probably null
R2325:Elp1	UTSW	4	56,784,622 (GRCm39)	missense	probably benign	0.00
R2333:Elp1	UTSW	4	56,775,456 (GRCm39)	missense	probably benign	0.28
R3151:Elp1	UTSW	4	56,770,985 (GRCm39)	missense	probably benign	0.24
R3622:Elp1	UTSW	4	56,759,925 (GRCm39)	splice site	probably null
R3624:Elp1	UTSW	4	56,798,708 (GRCm39)	missense	possibly damaging	0.52
R3889:Elp1	UTSW	4	56,759,852 (GRCm39)	missense	probably damaging	1.00
R4007:Elp1	UTSW	4	56,794,139 (GRCm39)	missense	probably damaging	1.00
R4196:Elp1	UTSW	4	56,755,353 (GRCm39)	missense	probably damaging	1.00
R4794:Elp1	UTSW	4	56,781,176 (GRCm39)	small deletion	probably benign
R5330:Elp1	UTSW	4	56,800,001 (GRCm39)	missense	probably benign	0.01
R5331:Elp1	UTSW	4	56,800,001 (GRCm39)	missense	probably benign	0.01
R5360:Elp1	UTSW	4	56,800,104 (GRCm39)	missense	probably benign	0.06
R5362:Elp1	UTSW	4	56,778,969 (GRCm39)	missense	probably damaging	0.99
R5645:Elp1	UTSW	4	56,776,920 (GRCm39)	missense	possibly damaging	0.93
R5877:Elp1	UTSW	4	56,787,807 (GRCm39)	missense	probably damaging	1.00
R6268:Elp1	UTSW	4	56,762,305 (GRCm39)	missense	probably damaging	1.00
R6284:Elp1	UTSW	4	56,762,281 (GRCm39)	missense	probably damaging	0.99
R6526:Elp1	UTSW	4	56,798,812 (GRCm39)	critical splice acceptor site	probably null
R6610:Elp1	UTSW	4	56,758,236 (GRCm39)	missense	probably benign	0.02
R6627:Elp1	UTSW	4	56,784,647 (GRCm39)	splice site	probably null
R6786:Elp1	UTSW	4	56,771,555 (GRCm39)	missense	possibly damaging	0.80
R6823:Elp1	UTSW	4	56,787,939 (GRCm39)	missense	probably damaging	1.00
R7129:Elp1	UTSW	4	56,787,944 (GRCm39)	missense	probably damaging	1.00
R7157:Elp1	UTSW	4	56,781,176 (GRCm39)	small deletion	probably benign
R7180:Elp1	UTSW	4	56,796,535 (GRCm39)	missense	probably damaging	1.00
R7391:Elp1	UTSW	4	56,781,212 (GRCm39)	missense	probably benign	0.00
R7391:Elp1	UTSW	4	56,781,211 (GRCm39)	missense	possibly damaging	0.82
R7403:Elp1	UTSW	4	56,778,994 (GRCm39)	missense	probably damaging	1.00
R7432:Elp1	UTSW	4	56,776,925 (GRCm39)	missense	probably damaging	1.00
R7674:Elp1	UTSW	4	56,792,075 (GRCm39)	missense	probably damaging	0.97
R7736:Elp1	UTSW	4	56,776,920 (GRCm39)	missense	possibly damaging	0.93
R7755:Elp1	UTSW	4	56,774,552 (GRCm39)	missense	possibly damaging	0.80
R7760:Elp1	UTSW	4	56,790,892 (GRCm39)	missense	probably benign	0.20
R7849:Elp1	UTSW	4	56,758,968 (GRCm39)	missense	possibly damaging	0.65
R7959:Elp1	UTSW	4	56,774,737 (GRCm39)	missense	probably damaging	1.00
R7970:Elp1	UTSW	4	56,771,466 (GRCm39)	missense	probably damaging	1.00
R8324:Elp1	UTSW	4	56,772,491 (GRCm39)	missense	probably damaging	1.00
R8456:Elp1	UTSW	4	56,781,176 (GRCm39)	small deletion	probably benign
R8671:Elp1	UTSW	4	56,771,453 (GRCm39)	missense	probably damaging	1.00
R9245:Elp1	UTSW	4	56,771,003 (GRCm39)	missense	probably benign	0.01
R9562:Elp1	UTSW	4	56,772,521 (GRCm39)	missense	probably benign	0.00
R9565:Elp1	UTSW	4	56,772,521 (GRCm39)	missense	probably benign	0.00
R9568:Elp1	UTSW	4	56,786,711 (GRCm39)	missense	probably damaging	1.00
Z1176:Elp1	UTSW	4	56,790,146 (GRCm39)	missense	probably benign	0.00

Posted On

2014-05-07